Wall clock time and date at job start Mon Mar 30 2020 06:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.50703 * 109.47151 * 180.27762 * 9 7 2 11 11 C 1.38233 * 120.00060 * 269.73288 * 10 9 7 12 12 C 1.38232 * 119.99735 * 179.76681 * 11 10 9 13 13 C 1.38236 * 120.00328 * 0.48227 * 12 11 10 14 14 S 1.76203 * 120.00324 * 179.76932 * 13 12 11 15 15 O 1.42097 * 106.39972 * 270.02136 * 14 13 12 16 16 O 1.42099 * 106.39738 * 42.94213 * 14 13 12 17 17 Cl 2.01998 * 107.21803 * 156.48006 * 14 13 12 18 18 C 1.38233 * 119.99593 * 359.78981 * 13 12 11 19 19 C 1.38231 * 119.99766 * 90.00279 * 10 9 7 20 20 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 22 22 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 23 23 H 1.08002 * 120.00409 * 359.97438 * 11 10 9 24 24 H 1.08008 * 119.99912 * 180.25278 * 12 11 10 25 25 H 1.08000 * 120.00181 * 179.97438 * 18 13 12 26 26 H 1.08003 * 120.00554 * 0.02562 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2305 -3.6445 0.0104 11 6 2.6753 -4.1788 -1.1844 12 6 3.5773 -5.2262 -1.1798 13 6 4.0269 -5.7460 0.0196 14 16 5.1720 -7.0852 0.0255 15 8 4.3967 -8.2760 0.0309 16 8 6.1382 -6.7912 -0.9741 17 17 6.1464 -7.0309 1.7942 18 6 3.5778 -5.2154 1.2144 19 6 2.6797 -4.1644 1.2098 20 1 -0.4850 0.8400 0.0004 21 1 0.6245 -2.5529 0.8956 22 1 0.6244 -2.5609 -0.8844 23 1 2.3207 -3.7757 -2.1215 24 1 3.9280 -5.6410 -2.1133 25 1 3.9287 -5.6216 2.1516 26 1 2.3286 -3.7502 2.1434 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584879966.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:27 Heat of formation + Delta-G solvation = -81.062166 kcal Electronic energy + Delta-G solvation = -14579.270113 eV Core-core repulsion = 11775.065493 eV Total energy + Delta-G solvation = -2804.204620 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 260.006 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.40004 -38.99095 -37.81937 -37.48409 -35.64555 -33.44790 -32.15180 -29.37217 -25.69270 -24.06791 -22.69579 -21.28759 -19.57263 -18.81172 -18.55503 -17.53163 -16.95838 -16.29878 -16.13443 -15.49067 -14.65691 -14.61317 -14.07667 -13.97258 -13.81008 -13.64265 -13.40804 -13.25409 -13.21613 -13.18285 -12.75186 -12.66080 -12.27732 -12.13783 -11.70560 -11.52122 -10.63766 -10.09437 -10.08556 -8.26023 -6.38821 -2.37960 -0.27621 0.28723 0.71458 1.41399 1.42193 1.50601 1.57322 2.32315 2.48279 2.85428 3.07429 3.65530 3.75360 4.06813 4.21115 4.38725 4.66901 4.75374 4.92918 5.20038 5.20824 5.28194 5.67862 5.78995 5.79824 6.07816 6.73265 7.30665 8.83874 Molecular weight = 260.01amu Principal moments of inertia in cm(-1) A = 0.039034 B = 0.004771 C = 0.004648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.152815 B = 5867.107827 C = 6022.298175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.010 3.990 3 Si 0.963 3.037 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.534 4.534 8 H 0.058 0.942 9 C 0.045 3.955 10 C 0.004 3.996 11 C -0.145 4.145 12 C -0.014 4.014 13 C -0.668 4.668 14 S 2.513 3.487 15 O -0.877 6.877 16 O -0.880 6.880 17 Cl -0.465 7.465 18 C -0.029 4.029 19 C -0.144 4.144 20 H 0.267 0.733 21 H 0.016 0.984 22 H 0.016 0.984 23 H 0.140 0.860 24 H 0.164 0.836 25 H 0.164 0.836 26 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.344 -12.428 1.089 15.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.189 4.189 3 Si 0.788 3.212 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.572 4.572 8 H 0.077 0.923 9 C 0.008 3.992 10 C 0.003 3.997 11 C -0.164 4.164 12 C -0.033 4.033 13 C -0.761 4.761 14 S 2.608 3.392 15 O -0.875 6.875 16 O -0.878 6.878 17 Cl -0.464 7.464 18 C -0.048 4.048 19 C -0.163 4.163 20 H 0.076 0.924 21 H 0.035 0.965 22 H 0.034 0.966 23 H 0.158 0.842 24 H 0.181 0.819 25 H 0.181 0.819 26 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 9.696 -12.912 1.095 16.184 hybrid contribution -0.536 1.636 -0.022 1.722 sum 9.160 -11.276 1.074 14.567 Atomic orbital electron populations 1.70044 1.07583 1.28212 1.50660 1.25849 0.95707 1.02957 0.94383 0.85525 0.78307 0.78221 0.79187 1.19312 1.20773 1.19274 1.21267 0.93231 0.90799 1.51860 0.92330 1.18312 0.92989 0.90623 0.97261 1.20935 0.92639 0.92113 0.93977 1.21343 0.99111 0.97214 0.98757 1.20973 0.92576 0.93161 0.96628 1.29406 1.22589 1.23117 1.00941 1.07951 0.76968 0.76516 0.77806 1.93738 1.68568 1.43532 1.81698 1.93717 1.59992 1.85022 1.49086 1.99037 1.85831 1.97665 1.63844 1.21180 0.93338 0.93728 0.96574 1.21329 0.99060 0.97277 0.98622 0.92417 0.96530 0.96567 0.84206 0.81896 0.81862 0.84297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.71 13.29 21.45 0.28 -52.43 15 2 C 0.01 0.55 5.46 84.65 0.46 1.01 15 3 Si 0.96 41.93 29.54 68.60 2.03 43.95 15 4 H -0.27 -11.31 7.11 99.48 0.71 -10.60 15 5 H -0.28 -12.07 7.11 99.48 0.71 -11.36 15 6 H -0.27 -11.27 7.11 99.48 0.71 -10.57 15 7 C -0.53 -28.15 9.09 25.60 0.23 -27.92 15 8 H 0.06 3.02 7.74 -2.91 -0.02 3.00 15 9 C 0.05 2.17 5.10 29.10 0.15 2.32 15 10 C 0.00 0.14 5.07 -19.87 -0.10 0.04 15 11 C -0.15 -4.85 9.70 22.27 0.22 -4.64 15 12 C -0.01 -0.38 9.60 22.27 0.21 -0.17 15 13 C -0.67 -17.19 5.85 22.27 0.13 -17.06 15 14 S 2.51 55.15 5.95 -56.49 -0.34 54.81 15 15 O -0.88 -21.95 17.99 -128.00 -2.30 -24.26 15 16 O -0.88 -22.02 17.82 -128.00 -2.28 -24.31 15 17 Cl -0.46 -9.75 28.33 -2.72 -0.08 -9.83 15 18 C -0.03 -0.77 9.45 22.27 0.21 -0.56 15 19 C -0.14 -4.76 9.70 22.27 0.22 -4.54 15 20 H 0.27 14.36 8.31 -92.71 -0.77 13.59 15 21 H 0.02 0.84 8.09 -2.39 -0.02 0.82 15 22 H 0.02 0.82 8.08 -2.38 -0.02 0.80 15 23 H 0.14 4.44 8.06 -2.91 -0.02 4.41 15 24 H 0.16 3.34 8.06 -2.91 -0.02 3.31 15 25 H 0.16 3.15 7.01 -2.91 -0.02 3.13 15 26 H 0.14 4.37 8.06 -2.91 -0.02 4.34 15 Total: -1.00 -62.92 266.67 0.24 -62.67 By element: Atomic # 1 Polarization: -0.31 SS G_CDS: 1.20 Total: 0.89 kcal Atomic # 6 Polarization: -53.24 SS G_CDS: 1.73 Total: -51.51 kcal Atomic # 7 Polarization: -52.71 SS G_CDS: 0.28 Total: -52.43 kcal Atomic # 8 Polarization: -43.98 SS G_CDS: -4.58 Total: -48.56 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.95 kcal Atomic # 16 Polarization: 55.15 SS G_CDS: -0.34 Total: 54.81 kcal Atomic # 17 Polarization: -9.75 SS G_CDS: -0.08 Total: -9.83 kcal Total: -62.92 0.24 -62.67 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584879966.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.389 kcal (2) G-P(sol) polarization free energy of solvation -62.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds