Wall clock time and date at job start Mon Mar 30 2020 06:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36941 * 120.00010 * 2 1 4 4 H 1.07999 * 120.00254 * 202.38025 * 3 2 1 5 5 C 1.38813 * 119.99884 * 22.38867 * 3 2 1 6 6 N 1.31624 * 120.00312 * 11.31305 * 5 3 2 7 7 Si 1.86798 * 119.99864 * 191.31749 * 5 3 2 8 8 H 1.48497 * 109.47383 * 59.99963 * 7 5 3 9 9 H 1.48504 * 109.47082 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46993 * 299.99606 * 7 5 3 11 11 C 1.46497 * 120.00179 * 180.02562 * 2 1 3 12 12 C 1.53002 * 109.46736 * 270.00222 * 11 2 1 13 13 H 1.09000 * 110.43685 * 52.46207 * 12 11 2 14 14 C 1.54879 * 110.60139 * 289.83597 * 12 11 2 15 15 C 1.54888 * 102.75360 * 203.32694 * 14 12 11 16 16 C 1.54267 * 104.19382 * 37.94344 * 15 14 12 17 17 H 1.08999 * 110.07450 * 95.69758 * 16 15 14 18 18 C 1.50701 * 110.03168 * 217.10839 * 16 15 14 19 19 C 1.38234 * 119.99791 * 237.16538 * 18 16 15 20 20 C 1.38241 * 120.00246 * 179.97438 * 19 18 16 21 21 C 1.38231 * 119.99530 * 359.97438 * 20 19 18 22 22 C 1.38240 * 120.00482 * 0.27353 * 21 20 19 23 23 C 1.38235 * 120.00290 * 57.18648 * 18 16 15 24 24 C 1.53873 * 106.59709 * 336.39034 * 16 15 14 25 25 H 1.08994 * 109.47496 * 274.20959 * 1 2 3 26 26 H 1.09003 * 109.47042 * 34.20947 * 1 2 3 27 27 H 1.09001 * 109.47485 * 154.20321 * 1 2 3 28 28 H 0.96992 * 119.99983 * 180.02562 * 6 5 3 29 29 H 1.08990 * 109.47476 * 150.00065 * 11 2 1 30 30 H 1.09005 * 109.47004 * 29.99697 * 11 2 1 31 31 H 1.09007 * 110.75982 * 321.64305 * 14 12 11 32 32 H 1.09002 * 110.75937 * 84.82772 * 14 12 11 33 33 H 1.08996 * 110.48856 * 279.26878 * 15 14 12 34 34 H 1.08997 * 110.48798 * 156.61794 * 15 14 12 35 35 H 1.08001 * 120.00030 * 0.02562 * 19 18 16 36 36 H 1.07995 * 120.00414 * 180.02562 * 20 19 18 37 37 H 1.07997 * 119.99973 * 180.02562 * 21 20 19 38 38 H 1.07996 * 120.00550 * 179.72969 * 22 21 20 39 39 H 1.08001 * 119.99471 * 0.02562 * 23 18 16 40 40 H 1.09004 * 110.02951 * 119.28680 * 24 16 15 41 41 H 1.09001 * 110.03521 * 240.71573 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1687 1.2212 -0.3561 5 6 1.5341 2.3428 0.4579 6 7 0.3845 2.2688 1.0946 7 14 2.3371 4.0046 0.1703 8 1 2.4917 4.2339 -1.2887 9 1 1.4852 5.0733 0.7513 10 1 3.6726 4.0280 0.8194 11 6 2.1975 -1.2687 -0.0006 12 6 2.4524 -1.7109 1.4418 13 1 1.5211 -1.7179 2.0080 14 6 3.4923 -0.7850 2.1200 15 6 4.0598 -1.6785 3.2508 16 6 4.1339 -3.0846 2.6205 17 1 5.1360 -3.2685 2.2330 18 6 3.7778 -4.1295 3.6463 19 6 4.6712 -5.1427 3.9398 20 6 4.3448 -6.1010 4.8812 21 6 3.1251 -6.0457 5.5294 22 6 2.2295 -5.0354 5.2323 23 6 2.5575 -4.0751 4.2936 24 6 3.1120 -3.1052 1.4704 25 1 -0.3634 0.0754 1.0248 26 1 -0.3633 0.8499 -0.5778 27 1 -0.3634 -0.9252 -0.4472 28 1 -0.0458 3.0771 1.4142 29 1 3.1498 -1.1382 -0.5143 30 1 1.6084 -2.0281 -0.5147 31 1 4.2776 -0.5059 1.4173 32 1 3.0101 0.1023 2.5303 33 1 3.3880 -1.6802 4.1091 34 1 5.0532 -1.3387 3.5433 35 1 5.6246 -5.1852 3.4342 36 1 5.0429 -6.8924 5.1107 37 1 2.8702 -6.7941 6.2652 38 1 1.2749 -4.9947 5.7356 39 1 1.8592 -3.2839 4.0637 40 1 3.6182 -3.2983 0.5245 41 1 2.3584 -3.8710 1.6541 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595307420.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:01 Heat of formation + Delta-G solvation = 27.769190 kcal Electronic energy + Delta-G solvation = -19337.720623 eV Core-core repulsion = 16603.133209 eV Total energy + Delta-G solvation = -2734.587414 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.67845 -37.54007 -35.12677 -32.02020 -30.89470 -30.67428 -28.69873 -27.43606 -25.76075 -24.50308 -22.63543 -21.95550 -21.01245 -19.43548 -18.98700 -16.86891 -16.62422 -15.47144 -15.08580 -14.81632 -14.30088 -13.98236 -13.53552 -13.29922 -13.21476 -12.96158 -12.76801 -12.50293 -12.15369 -11.58326 -11.20409 -11.10003 -10.91734 -10.83898 -10.76855 -10.52566 -10.33587 -10.25388 -10.14715 -10.07895 -9.82253 -9.68969 -9.53244 -8.86881 -8.54230 -8.45030 -6.65028 -5.64024 -3.08282 1.42406 1.44640 3.42489 3.48106 3.48741 3.83635 4.56651 4.78850 4.87768 5.02095 5.13629 5.19588 5.21459 5.46311 5.54070 5.59026 5.60885 5.74056 5.91443 5.94513 6.05662 6.09365 6.16029 6.22597 6.28465 6.33010 6.38407 6.50326 6.55129 6.58921 6.68930 6.78596 6.81331 6.90359 6.91686 7.07532 7.18269 7.27346 7.46624 7.80818 7.87953 8.48899 9.33116 9.97188 10.46728 11.41261 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.033899 B = 0.004452 C = 0.004362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.787099 B = 6287.838211 C = 6417.028702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.165 3.835 2 N -0.602 5.602 3 C -0.243 4.243 4 H 0.066 0.934 5 C 0.000 4.000 6 N -0.911 5.911 7 Si 0.900 3.100 8 H -0.286 1.286 9 H -0.292 1.292 10 H -0.284 1.284 11 C 0.159 3.841 12 C -0.106 4.106 13 H 0.064 0.936 14 C -0.097 4.097 15 C -0.119 4.119 16 C -0.056 4.056 17 H 0.072 0.928 18 C -0.061 4.061 19 C -0.124 4.124 20 C -0.123 4.123 21 C -0.134 4.134 22 C -0.120 4.120 23 C -0.112 4.112 24 C -0.111 4.111 25 H 0.026 0.974 26 H 0.043 0.957 27 H -0.006 1.006 28 H 0.251 0.749 29 H 0.042 0.958 30 H 0.033 0.967 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.118 0.882 36 H 0.117 0.883 37 H 0.116 0.884 38 H 0.119 0.881 39 H 0.125 0.875 40 H 0.061 0.939 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.126 -14.629 6.096 16.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.325 5.325 3 C -0.373 4.373 4 H 0.083 0.917 5 C -0.197 4.197 6 N -0.556 5.556 7 Si 0.730 3.270 8 H -0.213 1.213 9 H -0.218 1.218 10 H -0.210 1.210 11 C 0.032 3.968 12 C -0.127 4.127 13 H 0.083 0.917 14 C -0.135 4.135 15 C -0.156 4.156 16 C -0.074 4.074 17 H 0.091 0.909 18 C -0.061 4.061 19 C -0.142 4.142 20 C -0.141 4.141 21 C -0.152 4.152 22 C -0.138 4.138 23 C -0.130 4.130 24 C -0.150 4.150 25 H 0.045 0.955 26 H 0.061 0.939 27 H 0.012 0.988 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.052 0.948 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.136 0.864 36 H 0.135 0.865 37 H 0.134 0.866 38 H 0.137 0.863 39 H 0.143 0.857 40 H 0.079 0.921 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.997 -14.476 6.137 16.828 hybrid contribution 0.374 0.908 0.097 0.987 sum 6.371 -13.568 6.234 16.234 Atomic orbital electron populations 1.20765 0.82760 0.95323 0.99102 1.43942 1.01772 1.00767 1.85997 1.19111 0.97705 0.85415 1.35056 0.91662 1.24969 0.97747 0.98228 0.98802 1.70051 1.17911 1.26892 1.40791 0.86410 0.78532 0.84248 0.77813 1.21251 1.21754 1.21035 1.20878 0.95443 0.87896 0.92621 1.22650 0.97814 0.91993 1.00270 0.91743 1.22306 0.97586 0.97809 0.95768 1.22561 1.00493 0.93601 0.98964 1.20862 0.99413 0.93365 0.93776 0.90905 1.20057 0.93917 0.95598 0.96570 1.21086 0.99432 0.95077 0.98631 1.21080 0.96927 0.98921 0.97142 1.21075 0.94598 0.98964 1.00537 1.21157 0.99412 0.95047 0.98154 1.21123 0.96723 0.98897 0.96250 1.22322 0.97218 0.98629 0.96782 0.95545 0.93864 0.98776 0.93902 0.93996 0.94847 0.92246 0.90571 0.91902 0.92476 0.86396 0.86528 0.86585 0.86314 0.85703 0.92058 0.92436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.13 9.01 59.85 0.54 4.67 16 2 N -0.60 -15.11 2.89 -181.12 -0.52 -15.63 16 3 C -0.24 -6.59 8.82 -15.06 -0.13 -6.72 16 4 H 0.07 1.74 7.84 -52.49 -0.41 1.33 16 5 C 0.00 0.00 5.13 -17.43 -0.09 -0.09 16 6 N -0.91 -26.52 10.59 55.49 0.59 -25.93 16 7 Si 0.90 21.94 29.57 -169.99 -5.03 16.92 16 8 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 9 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 C 0.16 3.27 5.08 -4.04 -0.02 3.25 16 12 C -0.11 -1.95 3.08 -88.96 -0.27 -2.22 16 13 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 14 C -0.10 -1.82 5.47 -24.74 -0.14 -1.95 16 15 C -0.12 -1.82 6.26 -25.07 -0.16 -1.98 16 16 C -0.06 -0.77 3.13 -90.65 -0.28 -1.06 16 17 H 0.07 0.94 7.91 -51.93 -0.41 0.53 16 18 C -0.06 -0.82 4.69 -104.62 -0.49 -1.31 16 19 C -0.12 -1.48 9.68 -39.58 -0.38 -1.86 16 20 C -0.12 -1.33 10.05 -39.58 -0.40 -1.73 16 21 C -0.13 -1.45 10.05 -39.58 -0.40 -1.85 16 22 C -0.12 -1.42 10.05 -39.58 -0.40 -1.82 16 23 C -0.11 -1.50 8.13 -39.58 -0.32 -1.82 16 24 C -0.11 -1.66 5.81 -25.61 -0.15 -1.81 16 25 H 0.03 0.71 7.42 -51.93 -0.39 0.32 16 26 H 0.04 1.16 7.19 -51.93 -0.37 0.79 16 27 H -0.01 -0.14 7.84 -51.93 -0.41 -0.55 16 28 H 0.25 7.15 8.31 -40.82 -0.34 6.82 16 29 H 0.04 0.85 7.91 -51.93 -0.41 0.44 16 30 H 0.03 0.64 7.86 -51.93 -0.41 0.23 16 31 H 0.06 1.13 7.98 -51.93 -0.41 0.71 16 32 H 0.08 1.69 8.10 -51.93 -0.42 1.27 16 33 H 0.06 0.98 6.86 -51.93 -0.36 0.63 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.12 1.21 7.96 -52.49 -0.42 0.79 16 36 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 37 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 38 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 39 H 0.13 1.75 7.73 -52.49 -0.41 1.34 16 40 H 0.06 0.87 7.84 -51.93 -0.41 0.46 16 41 H 0.06 0.85 7.30 -51.93 -0.38 0.47 16 LS Contribution 325.34 15.07 4.90 4.90 Total: -1.00 -29.03 325.34 -10.01 -39.04 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -6.86 Total: -0.98 kcal Atomic # 6 Polarization: -15.22 SS G_CDS: -3.09 Total: -18.31 kcal Atomic # 7 Polarization: -41.63 SS G_CDS: 0.06 Total: -41.57 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.03 Total: 16.92 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.03 -10.01 -39.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595307420.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.808 kcal (2) G-P(sol) polarization free energy of solvation -29.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds