Wall clock time and date at job start Mon Mar 30 2020 06:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36941 * 120.00010 * 2 1 4 4 H 1.07999 * 120.00254 * 202.38025 * 3 2 1 5 5 C 1.38813 * 119.99884 * 22.38867 * 3 2 1 6 6 N 1.31624 * 120.00312 * 11.31305 * 5 3 2 7 7 Si 1.86798 * 119.99864 * 191.31749 * 5 3 2 8 8 H 1.48497 * 109.47383 * 59.99963 * 7 5 3 9 9 H 1.48504 * 109.47082 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46993 * 299.99606 * 7 5 3 11 11 C 1.46497 * 120.00179 * 180.02562 * 2 1 3 12 12 C 1.53002 * 109.46736 * 270.00222 * 11 2 1 13 13 H 1.09000 * 110.43685 * 52.46207 * 12 11 2 14 14 C 1.54879 * 110.60139 * 289.83597 * 12 11 2 15 15 C 1.54888 * 102.75360 * 203.32694 * 14 12 11 16 16 C 1.54267 * 104.19382 * 37.94344 * 15 14 12 17 17 H 1.08999 * 110.07450 * 95.69758 * 16 15 14 18 18 C 1.50701 * 110.03168 * 217.10839 * 16 15 14 19 19 C 1.38234 * 119.99791 * 237.16538 * 18 16 15 20 20 C 1.38241 * 120.00246 * 179.97438 * 19 18 16 21 21 C 1.38231 * 119.99530 * 359.97438 * 20 19 18 22 22 C 1.38240 * 120.00482 * 0.27353 * 21 20 19 23 23 C 1.38235 * 120.00290 * 57.18648 * 18 16 15 24 24 C 1.53873 * 106.59709 * 336.39034 * 16 15 14 25 25 H 1.08994 * 109.47496 * 274.20959 * 1 2 3 26 26 H 1.09003 * 109.47042 * 34.20947 * 1 2 3 27 27 H 1.09001 * 109.47485 * 154.20321 * 1 2 3 28 28 H 0.96992 * 119.99983 * 180.02562 * 6 5 3 29 29 H 1.08990 * 109.47476 * 150.00065 * 11 2 1 30 30 H 1.09005 * 109.47004 * 29.99697 * 11 2 1 31 31 H 1.09007 * 110.75982 * 321.64305 * 14 12 11 32 32 H 1.09002 * 110.75937 * 84.82772 * 14 12 11 33 33 H 1.08996 * 110.48856 * 279.26878 * 15 14 12 34 34 H 1.08997 * 110.48798 * 156.61794 * 15 14 12 35 35 H 1.08001 * 120.00030 * 0.02562 * 19 18 16 36 36 H 1.07995 * 120.00414 * 180.02562 * 20 19 18 37 37 H 1.07997 * 119.99973 * 180.02562 * 21 20 19 38 38 H 1.07996 * 120.00550 * 179.72969 * 22 21 20 39 39 H 1.08001 * 119.99471 * 0.02562 * 23 18 16 40 40 H 1.09004 * 110.02951 * 119.28680 * 24 16 15 41 41 H 1.09001 * 110.03521 * 240.71573 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1687 1.2212 -0.3561 5 6 1.5341 2.3428 0.4579 6 7 0.3845 2.2688 1.0946 7 14 2.3371 4.0046 0.1703 8 1 2.4917 4.2339 -1.2887 9 1 1.4852 5.0733 0.7513 10 1 3.6726 4.0280 0.8194 11 6 2.1975 -1.2687 -0.0006 12 6 2.4524 -1.7109 1.4418 13 1 1.5211 -1.7179 2.0080 14 6 3.4923 -0.7850 2.1200 15 6 4.0598 -1.6785 3.2508 16 6 4.1339 -3.0846 2.6205 17 1 5.1360 -3.2685 2.2330 18 6 3.7778 -4.1295 3.6463 19 6 4.6712 -5.1427 3.9398 20 6 4.3448 -6.1010 4.8812 21 6 3.1251 -6.0457 5.5294 22 6 2.2295 -5.0354 5.2323 23 6 2.5575 -4.0751 4.2936 24 6 3.1120 -3.1052 1.4704 25 1 -0.3634 0.0754 1.0248 26 1 -0.3633 0.8499 -0.5778 27 1 -0.3634 -0.9252 -0.4472 28 1 -0.0458 3.0771 1.4142 29 1 3.1498 -1.1382 -0.5143 30 1 1.6084 -2.0281 -0.5147 31 1 4.2776 -0.5059 1.4173 32 1 3.0101 0.1023 2.5303 33 1 3.3880 -1.6802 4.1091 34 1 5.0532 -1.3387 3.5433 35 1 5.6246 -5.1852 3.4342 36 1 5.0429 -6.8924 5.1107 37 1 2.8702 -6.7941 6.2652 38 1 1.2749 -4.9947 5.7356 39 1 1.8592 -3.2839 4.0637 40 1 3.6182 -3.2983 0.5245 41 1 2.3584 -3.8710 1.6541 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595307420.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:00 Heat of formation + Delta-G solvation = 14.809110 kcal Electronic energy + Delta-G solvation = -19338.282614 eV Core-core repulsion = 16603.133209 eV Total energy + Delta-G solvation = -2735.149405 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.72741 -38.84774 -36.91817 -33.63926 -32.29838 -31.70013 -30.20009 -28.71998 -27.81757 -26.14620 -23.58505 -23.06348 -22.79437 -20.79742 -20.28828 -18.71291 -17.80255 -16.93057 -16.33687 -16.20767 -15.72813 -15.26980 -15.18579 -14.95965 -14.31043 -14.18565 -14.09341 -13.94587 -13.69286 -12.99972 -12.80168 -12.68129 -12.57760 -12.37366 -12.18916 -12.07085 -12.01487 -11.95540 -11.61179 -11.46507 -11.43016 -11.31751 -11.11334 -10.55741 -9.75705 -9.49013 -8.71082 -7.76854 -5.22788 0.51963 0.55767 1.46733 1.48532 1.54613 2.54430 2.92804 3.37173 3.63881 3.76316 3.87104 4.00564 4.16838 4.21415 4.25114 4.34955 4.56814 4.63619 4.66566 4.68561 4.77912 4.81158 4.84060 4.90909 4.97953 5.05996 5.10126 5.15354 5.24292 5.26819 5.29965 5.39859 5.45073 5.59239 5.63918 5.67151 5.68546 5.71575 5.76861 5.86145 6.19555 6.38896 7.21384 7.94300 8.38632 9.27258 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.033899 B = 0.004452 C = 0.004362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.787099 B = 6287.838211 C = 6417.028702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.618 5.618 3 C -0.243 4.243 4 H 0.069 0.931 5 C -0.054 4.054 6 N -0.942 5.942 7 Si 0.960 3.040 8 H -0.279 1.279 9 H -0.297 1.297 10 H -0.276 1.276 11 C 0.155 3.845 12 C -0.099 4.099 13 H 0.038 0.962 14 C -0.094 4.094 15 C -0.110 4.110 16 C -0.047 4.047 17 H 0.092 0.908 18 C -0.077 4.077 19 C -0.128 4.128 20 C -0.123 4.123 21 C -0.134 4.134 22 C -0.130 4.130 23 C -0.132 4.132 24 C -0.099 4.099 25 H -0.001 1.001 26 H 0.017 0.983 27 H 0.025 0.975 28 H 0.244 0.756 29 H 0.048 0.952 30 H 0.050 0.950 31 H 0.057 0.943 32 H 0.029 0.971 33 H 0.053 0.947 34 H 0.071 0.929 35 H 0.137 0.863 36 H 0.145 0.855 37 H 0.142 0.858 38 H 0.130 0.870 39 H 0.106 0.894 40 H 0.076 0.924 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.148 -16.850 6.210 19.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.341 5.341 3 C -0.374 4.374 4 H 0.087 0.913 5 C -0.249 4.249 6 N -0.590 5.590 7 Si 0.789 3.211 8 H -0.206 1.206 9 H -0.224 1.224 10 H -0.202 1.202 11 C 0.029 3.971 12 C -0.120 4.120 13 H 0.056 0.944 14 C -0.132 4.132 15 C -0.147 4.147 16 C -0.065 4.065 17 H 0.111 0.889 18 C -0.077 4.077 19 C -0.146 4.146 20 C -0.141 4.141 21 C -0.152 4.152 22 C -0.148 4.148 23 C -0.150 4.150 24 C -0.138 4.138 25 H 0.017 0.983 26 H 0.035 0.965 27 H 0.044 0.956 28 H 0.053 0.947 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.048 0.952 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.155 0.845 36 H 0.163 0.837 37 H 0.160 0.840 38 H 0.148 0.852 39 H 0.124 0.876 40 H 0.095 0.905 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.045 -16.727 6.241 19.582 hybrid contribution -0.260 1.510 0.080 1.534 sum 7.785 -15.217 6.321 18.224 Atomic orbital electron populations 1.20497 0.83153 0.95673 0.97242 1.44188 1.01927 1.01923 1.86052 1.19389 0.97756 0.86377 1.33862 0.91339 1.25679 0.98492 1.01445 0.99247 1.70230 1.19367 1.27081 1.42296 0.85443 0.77706 0.80182 0.77778 1.20564 1.22380 1.20229 1.21070 0.95489 0.86436 0.94078 1.22435 0.96958 0.94401 0.98202 0.94378 1.22171 0.97351 0.96761 0.96870 1.22460 1.00689 0.94159 0.97438 1.20766 0.99955 0.92375 0.93409 0.88930 1.20012 0.94368 0.96275 0.97021 1.21343 0.99808 0.94628 0.98847 1.21459 0.97289 0.99119 0.96226 1.21432 0.94309 0.98820 1.00602 1.21378 1.00413 0.95084 0.97925 1.21115 0.96975 0.99315 0.97605 1.22199 0.97492 0.95864 0.98209 0.98286 0.96451 0.95624 0.94658 0.93318 0.93118 0.92461 0.95174 0.92775 0.91070 0.84508 0.83729 0.84043 0.85167 0.87584 0.90518 0.92109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.20 9.01 127.77 1.15 10.35 16 2 N -0.62 -31.42 2.89 -726.95 -2.10 -33.52 16 3 C -0.24 -13.38 8.82 84.03 0.74 -12.64 16 4 H 0.07 3.66 7.84 -2.91 -0.02 3.64 16 5 C -0.05 -3.09 5.13 84.86 0.44 -2.65 16 6 N -0.94 -56.85 10.59 21.65 0.23 -56.63 16 7 Si 0.96 45.84 29.57 68.60 2.03 47.87 16 8 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 9 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16 10 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 11 C 0.15 6.29 5.08 86.38 0.44 6.73 16 12 C -0.10 -3.66 3.08 -9.72 -0.03 -3.69 16 13 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 14 C -0.09 -3.57 5.47 31.88 0.17 -3.40 16 15 C -0.11 -3.33 6.26 31.67 0.20 -3.13 16 16 C -0.05 -1.21 3.13 -10.82 -0.03 -1.24 16 17 H 0.09 2.06 7.91 -2.39 -0.02 2.04 16 18 C -0.08 -1.90 4.69 -19.87 -0.09 -2.00 16 19 C -0.13 -2.65 9.68 22.27 0.22 -2.44 16 20 C -0.12 -2.23 10.05 22.27 0.22 -2.01 16 21 C -0.13 -2.51 10.05 22.27 0.22 -2.29 16 22 C -0.13 -2.90 10.05 22.27 0.22 -2.68 16 23 C -0.13 -3.47 8.13 22.27 0.18 -3.29 16 24 C -0.10 -2.82 5.81 31.32 0.18 -2.64 16 25 H 0.00 -0.07 7.42 -2.39 -0.02 -0.08 16 26 H 0.02 0.94 7.19 -2.39 -0.02 0.92 16 27 H 0.03 1.12 7.84 -2.39 -0.02 1.10 16 28 H 0.24 14.47 8.31 -92.71 -0.77 13.70 16 29 H 0.05 1.91 7.91 -2.39 -0.02 1.89 16 30 H 0.05 1.87 7.86 -2.38 -0.02 1.85 16 31 H 0.06 2.17 7.98 -2.38 -0.02 2.15 16 32 H 0.03 1.39 8.10 -2.39 -0.02 1.38 16 33 H 0.05 1.73 6.86 -2.39 -0.02 1.71 16 34 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.14 2.25 7.96 -2.91 -0.02 2.23 16 36 H 0.14 1.78 8.06 -2.91 -0.02 1.76 16 37 H 0.14 1.89 8.06 -2.91 -0.02 1.86 16 38 H 0.13 2.47 8.06 -2.91 -0.02 2.45 16 39 H 0.11 3.10 7.73 -2.91 -0.02 3.07 16 40 H 0.08 1.96 7.84 -2.38 -0.02 1.94 16 41 H 0.06 1.70 7.30 -2.39 -0.02 1.68 16 Total: -1.00 -63.78 325.34 5.36 -58.43 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: 0.97 Total: 10.85 kcal Atomic # 6 Polarization: -31.23 SS G_CDS: 4.23 Total: -26.99 kcal Atomic # 7 Polarization: -88.27 SS G_CDS: -1.87 Total: -90.15 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -63.78 5.36 -58.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595307420.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.235 kcal (2) G-P(sol) polarization free energy of solvation -63.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds