Wall clock time and date at job start Mon Mar 30 2020 06:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46693 * 2 1 4 4 C 1.52996 * 109.47304 * 240.00129 * 2 1 3 5 5 C 1.53000 * 109.47188 * 64.99687 * 4 2 1 6 6 N 1.46906 * 109.47072 * 180.02562 * 5 4 2 7 7 C 1.47475 * 110.99695 * 265.97442 * 6 5 4 8 8 C 1.53521 * 87.93048 * 221.29471 * 7 6 5 9 9 C 1.50699 * 114.17169 * 139.67081 * 8 7 6 10 10 H 1.08001 * 120.00186 * 266.16629 * 9 8 7 11 11 C 1.37877 * 119.99796 * 86.15787 * 9 8 7 12 12 N 1.31524 * 119.99710 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 120.00341 * 0.02562 * 11 9 8 14 14 H 1.48501 * 109.46704 * 89.99888 * 13 11 9 15 15 H 1.48498 * 109.47256 * 210.00022 * 13 11 9 16 16 H 1.48495 * 109.47028 * 329.99945 * 13 11 9 17 17 C 1.47472 * 111.00187 * 169.99961 * 6 5 4 18 18 C 1.50698 * 109.47018 * 119.99887 * 2 1 3 19 19 C 1.38233 * 119.99955 * 59.72859 * 18 2 1 20 20 C 1.38240 * 119.99818 * 179.78675 * 19 18 2 21 21 C 1.38237 * 119.99953 * 0.44674 * 20 19 18 22 22 C 1.38240 * 119.99956 * 359.80583 * 21 20 19 23 23 C 1.38232 * 119.99856 * 359.97438 * 22 21 20 24 24 H 1.09007 * 109.46960 * 180.02562 * 1 2 3 25 25 H 1.08992 * 109.47399 * 300.00166 * 1 2 3 26 26 H 1.09000 * 109.47122 * 60.00819 * 1 2 3 27 27 H 1.09002 * 109.46844 * 305.00045 * 4 2 1 28 28 H 1.08996 * 109.46961 * 184.99896 * 4 2 1 29 29 H 1.08993 * 109.47007 * 60.00172 * 5 4 2 30 30 H 1.08996 * 109.47340 * 299.99977 * 5 4 2 31 31 H 1.09003 * 113.47854 * 336.05764 * 7 6 5 32 32 H 1.08998 * 113.48126 * 106.52852 * 7 6 5 33 33 H 1.08999 * 114.34186 * 272.36383 * 8 7 6 34 34 H 0.96996 * 119.99968 * 180.02562 * 12 11 9 35 35 H 1.08998 * 113.48140 * 253.47102 * 17 6 5 36 36 H 1.09007 * 113.47537 * 23.93571 * 17 6 5 37 37 H 1.07999 * 120.00126 * 359.97438 * 19 18 2 38 38 H 1.08002 * 120.00325 * 180.26987 * 20 19 18 39 39 H 1.07994 * 120.00072 * 179.83440 * 21 20 19 40 40 H 1.07997 * 119.99765 * 180.02562 * 22 21 20 41 41 H 1.08000 * 120.00079 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6353 0.0690 -2.4953 6 7 2.1245 -0.6239 -3.6948 7 6 3.4357 -0.0942 -4.1131 8 6 2.9412 -0.1704 -5.5645 9 6 3.3479 1.0035 -6.4174 10 1 2.6819 1.8464 -6.5290 11 6 4.5703 1.0015 -7.0552 12 7 4.9254 2.0263 -7.7992 13 14 5.7220 -0.4566 -6.8627 14 1 5.4431 -1.4517 -7.9290 15 1 7.1288 0.0059 -6.9728 16 1 5.5095 -1.0829 -5.5332 17 6 1.5561 -0.0280 -4.9181 18 6 2.0323 -0.7104 1.2305 19 6 1.6937 -2.0322 1.4521 20 6 2.1582 -2.6851 2.5786 21 6 2.9535 -2.0135 3.4881 22 6 3.2878 -0.6901 3.2691 23 6 2.8272 -0.0386 2.1403 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 1.6054 -1.7198 -1.2951 28 1 3.1263 -0.7994 -1.2055 29 1 2.0698 1.0674 -2.4494 30 1 0.5490 0.1471 -2.5390 31 1 3.6222 0.9237 -3.7708 32 1 4.2646 -0.7695 -3.9008 33 1 3.1116 -1.1327 -6.0472 34 1 5.7852 2.0248 -8.2482 35 1 0.7918 -0.6470 -5.3881 36 1 1.2408 1.0077 -4.7906 37 1 1.0689 -2.5556 0.7436 38 1 1.8973 -3.7191 2.7496 39 1 3.3141 -2.5227 4.3695 40 1 3.9096 -0.1656 3.9795 41 1 3.0880 0.9954 1.9694 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597202895.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:46 Heat of formation + Delta-G solvation = 42.644924 kcal Electronic energy + Delta-G solvation = -18687.233892 eV Core-core repulsion = 15953.291538 eV Total energy + Delta-G solvation = -2733.942354 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.72711 -39.03244 -35.85989 -32.66154 -31.15874 -30.99099 -29.20432 -27.27206 -24.99452 -24.77586 -23.17181 -22.60874 -21.02224 -19.78148 -18.59203 -17.11817 -16.88457 -15.57189 -15.40141 -14.99480 -14.67178 -14.40873 -13.97604 -13.60788 -13.53652 -13.26133 -13.10467 -12.78173 -12.35997 -12.21582 -11.90868 -11.72965 -11.40642 -11.34484 -11.10239 -10.88225 -10.65733 -10.63268 -10.05111 -9.94587 -9.81913 -9.45139 -9.11282 -9.03007 -8.76197 -8.54790 -8.11109 -6.10140 -4.10374 1.25955 1.29061 3.30436 3.38723 3.44225 3.67784 4.42899 4.50217 4.67529 4.81863 4.88222 4.98716 5.08301 5.16816 5.20703 5.34210 5.38816 5.43633 5.53501 5.60094 5.78613 5.84670 5.87788 5.93239 5.98551 6.01775 6.07362 6.15079 6.23730 6.37420 6.38435 6.41185 6.43471 6.53497 6.54828 6.61975 6.77959 6.90285 7.05090 7.37343 7.70219 7.90948 8.49506 8.92818 9.53098 11.02439 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.029066 B = 0.003861 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.083160 B = 7249.501236 C = 7655.588964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.055 4.055 3 H 0.076 0.924 4 C -0.098 4.098 5 C 0.019 3.981 6 N -0.486 5.486 7 C -0.010 4.010 8 C -0.001 4.001 9 C -0.511 4.511 10 H 0.073 0.927 11 C 0.073 3.927 12 N -0.900 5.900 13 Si 0.876 3.124 14 H -0.277 1.277 15 H -0.289 1.289 16 H -0.257 1.257 17 C 0.009 3.991 18 C -0.068 4.068 19 C -0.113 4.113 20 C -0.120 4.120 21 C -0.130 4.130 22 C -0.120 4.120 23 C -0.120 4.120 24 H 0.056 0.944 25 H 0.052 0.948 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.041 0.959 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.264 0.736 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.122 0.878 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.119 0.881 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.212 -6.418 20.804 22.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.074 4.074 3 H 0.095 0.905 4 C -0.136 4.136 5 C -0.110 4.110 6 N -0.208 5.208 7 C -0.139 4.139 8 C -0.020 4.020 9 C -0.549 4.549 10 H 0.091 0.909 11 C -0.129 4.129 12 N -0.537 5.537 13 Si 0.703 3.297 14 H -0.203 1.203 15 H -0.215 1.215 16 H -0.181 1.181 17 C -0.120 4.120 18 C -0.068 4.068 19 C -0.131 4.131 20 C -0.138 4.138 21 C -0.148 4.148 22 C -0.138 4.138 23 C -0.138 4.138 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.059 0.941 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.140 0.860 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.137 0.863 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -6.175 -7.045 20.867 22.873 hybrid contribution 0.849 0.257 0.060 0.889 sum -5.326 -6.787 20.927 22.636 Atomic orbital electron populations 1.21877 0.94323 1.02090 1.01746 1.20216 0.96029 0.99180 0.91994 0.90512 1.21487 1.01079 0.99229 0.91796 1.22690 0.99977 0.96059 0.92235 1.68790 1.05732 1.45534 1.00708 1.24405 0.91917 0.97807 0.99756 1.20512 0.91782 0.97985 0.91759 1.20936 1.02985 1.02828 1.28141 0.90856 1.25018 0.97877 0.95875 0.94146 1.69916 1.22059 1.30444 1.31319 0.86863 0.79950 0.83189 0.79677 1.20276 1.21515 1.18147 1.23767 0.99369 0.97494 0.91367 1.19945 0.96784 0.94263 0.95769 1.21043 1.00204 0.94401 0.97493 1.21143 0.98180 0.99758 0.94736 1.21111 0.99221 0.94952 0.99557 1.21124 1.00064 0.95008 0.97638 1.21115 0.98192 0.99989 0.94459 0.92480 0.92922 0.91888 0.91388 0.92013 0.94098 0.91620 0.91846 0.92044 0.92642 0.92615 0.91676 0.92213 0.86022 0.86275 0.86422 0.86295 0.86167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 8.76 37.16 0.33 -1.14 16 2 C -0.06 -0.63 2.56 -91.77 -0.24 -0.87 16 3 H 0.08 0.87 7.88 -51.93 -0.41 0.46 16 4 C -0.10 -1.34 4.75 -26.73 -0.13 -1.47 16 5 C 0.02 0.30 4.57 -3.82 -0.02 0.29 16 6 N -0.49 -9.31 6.33 -244.65 -1.55 -10.86 16 7 C -0.01 -0.21 6.69 -7.55 -0.05 -0.26 16 8 C 0.00 -0.02 2.96 -91.24 -0.27 -0.29 16 9 C -0.51 -14.21 9.37 -34.44 -0.32 -14.53 16 10 H 0.07 2.20 8.06 -52.49 -0.42 1.78 16 11 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 12 N -0.90 -27.30 13.96 55.43 0.77 -26.53 16 13 Si 0.88 21.40 27.14 -169.99 -4.61 16.79 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 15 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 16 H -0.26 -6.01 5.68 56.52 0.32 -5.69 16 17 C 0.01 0.18 7.25 -7.55 -0.05 0.12 16 18 C -0.07 -0.77 4.78 -104.63 -0.50 -1.27 16 19 C -0.11 -1.24 8.76 -39.58 -0.35 -1.58 16 20 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 21 C -0.13 -1.24 10.05 -39.58 -0.40 -1.64 16 22 C -0.12 -1.19 10.05 -39.58 -0.40 -1.58 16 23 C -0.12 -1.29 9.67 -39.58 -0.38 -1.68 16 24 H 0.06 0.56 7.37 -51.93 -0.38 0.18 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.65 6.56 -51.93 -0.34 0.31 16 27 H 0.07 0.93 7.59 -51.93 -0.39 0.54 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.04 0.67 7.30 -51.93 -0.38 0.29 16 30 H 0.07 0.95 6.50 -51.93 -0.34 0.62 16 31 H 0.06 1.39 7.37 -51.93 -0.38 1.01 16 32 H 0.06 1.33 7.12 -51.93 -0.37 0.96 16 33 H 0.06 1.33 7.04 -51.93 -0.37 0.96 16 34 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 35 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 36 H 0.06 1.21 7.87 -51.92 -0.41 0.81 16 37 H 0.12 1.23 7.16 -52.49 -0.38 0.85 16 38 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 39 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 40 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 41 H 0.12 1.15 7.95 -52.49 -0.42 0.73 16 LS Contribution 325.74 15.07 4.91 4.91 Total: -1.00 -29.80 325.74 -10.49 -40.29 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -6.74 Total: 0.91 kcal Atomic # 6 Polarization: -22.24 SS G_CDS: -3.27 Total: -25.52 kcal Atomic # 7 Polarization: -36.61 SS G_CDS: -0.78 Total: -37.38 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.61 Total: 16.79 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.80 -10.49 -40.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597202895.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.936 kcal (2) G-P(sol) polarization free energy of solvation -29.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds