Wall clock time and date at job start Mon Mar 30 2020 06:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46693 * 2 1 4 4 C 1.52996 * 109.47304 * 240.00129 * 2 1 3 5 5 C 1.53000 * 109.47188 * 64.99687 * 4 2 1 6 6 N 1.46906 * 109.47072 * 180.02562 * 5 4 2 7 7 C 1.47475 * 110.99695 * 265.97442 * 6 5 4 8 8 C 1.53521 * 87.93048 * 221.29471 * 7 6 5 9 9 C 1.50699 * 114.17169 * 139.67081 * 8 7 6 10 10 H 1.08001 * 120.00186 * 266.16629 * 9 8 7 11 11 C 1.37877 * 119.99796 * 86.15787 * 9 8 7 12 12 N 1.31524 * 119.99710 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 120.00341 * 0.02562 * 11 9 8 14 14 H 1.48501 * 109.46704 * 89.99888 * 13 11 9 15 15 H 1.48498 * 109.47256 * 210.00022 * 13 11 9 16 16 H 1.48495 * 109.47028 * 329.99945 * 13 11 9 17 17 C 1.47472 * 111.00187 * 169.99961 * 6 5 4 18 18 C 1.50698 * 109.47018 * 119.99887 * 2 1 3 19 19 C 1.38233 * 119.99955 * 59.72859 * 18 2 1 20 20 C 1.38240 * 119.99818 * 179.78675 * 19 18 2 21 21 C 1.38237 * 119.99953 * 0.44674 * 20 19 18 22 22 C 1.38240 * 119.99956 * 359.80583 * 21 20 19 23 23 C 1.38232 * 119.99856 * 359.97438 * 22 21 20 24 24 H 1.09007 * 109.46960 * 180.02562 * 1 2 3 25 25 H 1.08992 * 109.47399 * 300.00166 * 1 2 3 26 26 H 1.09000 * 109.47122 * 60.00819 * 1 2 3 27 27 H 1.09002 * 109.46844 * 305.00045 * 4 2 1 28 28 H 1.08996 * 109.46961 * 184.99896 * 4 2 1 29 29 H 1.08993 * 109.47007 * 60.00172 * 5 4 2 30 30 H 1.08996 * 109.47340 * 299.99977 * 5 4 2 31 31 H 1.09003 * 113.47854 * 336.05764 * 7 6 5 32 32 H 1.08998 * 113.48126 * 106.52852 * 7 6 5 33 33 H 1.08999 * 114.34186 * 272.36383 * 8 7 6 34 34 H 0.96996 * 119.99968 * 180.02562 * 12 11 9 35 35 H 1.08998 * 113.48140 * 253.47102 * 17 6 5 36 36 H 1.09007 * 113.47537 * 23.93571 * 17 6 5 37 37 H 1.07999 * 120.00126 * 359.97438 * 19 18 2 38 38 H 1.08002 * 120.00325 * 180.26987 * 20 19 18 39 39 H 1.07994 * 120.00072 * 179.83440 * 21 20 19 40 40 H 1.07997 * 119.99765 * 180.02562 * 22 21 20 41 41 H 1.08000 * 120.00079 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6353 0.0690 -2.4953 6 7 2.1245 -0.6239 -3.6948 7 6 3.4357 -0.0942 -4.1131 8 6 2.9412 -0.1704 -5.5645 9 6 3.3479 1.0035 -6.4174 10 1 2.6819 1.8464 -6.5290 11 6 4.5703 1.0015 -7.0552 12 7 4.9254 2.0263 -7.7992 13 14 5.7220 -0.4566 -6.8627 14 1 5.4431 -1.4517 -7.9290 15 1 7.1288 0.0059 -6.9728 16 1 5.5095 -1.0829 -5.5332 17 6 1.5561 -0.0280 -4.9181 18 6 2.0323 -0.7104 1.2305 19 6 1.6937 -2.0322 1.4521 20 6 2.1582 -2.6851 2.5786 21 6 2.9535 -2.0135 3.4881 22 6 3.2878 -0.6901 3.2691 23 6 2.8272 -0.0386 2.1403 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 1.6054 -1.7198 -1.2951 28 1 3.1263 -0.7994 -1.2055 29 1 2.0698 1.0674 -2.4494 30 1 0.5490 0.1471 -2.5390 31 1 3.6222 0.9237 -3.7708 32 1 4.2646 -0.7695 -3.9008 33 1 3.1116 -1.1327 -6.0472 34 1 5.7852 2.0248 -8.2482 35 1 0.7918 -0.6470 -5.3881 36 1 1.2408 1.0077 -4.7906 37 1 1.0689 -2.5556 0.7436 38 1 1.8973 -3.7191 2.7496 39 1 3.3141 -2.5227 4.3695 40 1 3.9096 -0.1656 3.9795 41 1 3.0880 0.9954 1.9694 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597202895.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:46 Heat of formation + Delta-G solvation = 25.370833 kcal Electronic energy + Delta-G solvation = -18687.982953 eV Core-core repulsion = 15953.291538 eV Total energy + Delta-G solvation = -2734.691415 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.92490 -40.25582 -36.84713 -34.72070 -32.46398 -31.75756 -30.29278 -28.73514 -26.69298 -26.17982 -24.30289 -23.48376 -22.27834 -20.77474 -20.34507 -19.09946 -17.76695 -16.88314 -16.47768 -16.37020 -16.10142 -15.55788 -15.32215 -14.96270 -14.53952 -14.47369 -14.30375 -14.10211 -13.62212 -13.44806 -13.21057 -13.09368 -12.74125 -12.68182 -12.22611 -12.11017 -11.97010 -11.84651 -11.65030 -11.45656 -11.34074 -11.15798 -11.05765 -10.65032 -9.78862 -9.74975 -9.55127 -8.30159 -6.35174 0.49151 0.53311 1.37661 1.39712 1.52556 2.37268 2.90111 3.03360 3.23739 3.71600 3.86563 3.98592 4.15823 4.18524 4.22774 4.25530 4.31960 4.40022 4.46910 4.54689 4.62218 4.65828 4.71163 4.74164 4.75506 4.89895 5.00156 5.02767 5.04176 5.07287 5.19744 5.20939 5.32718 5.36402 5.47809 5.52865 5.62496 5.63832 5.65769 5.79973 6.16366 6.28243 6.31193 6.70487 7.31843 8.85954 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.029066 B = 0.003861 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.083160 B = 7249.501236 C = 7655.588964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.048 4.048 3 H 0.074 0.926 4 C -0.087 4.087 5 C 0.019 3.981 6 N -0.478 5.478 7 C -0.001 4.001 8 C -0.016 4.016 9 C -0.515 4.515 10 H 0.034 0.966 11 C 0.015 3.985 12 N -0.949 5.949 13 Si 0.942 3.058 14 H -0.269 1.269 15 H -0.288 1.288 16 H -0.239 1.239 17 C 0.017 3.983 18 C -0.083 4.083 19 C -0.126 4.126 20 C -0.127 4.127 21 C -0.135 4.135 22 C -0.127 4.127 23 C -0.135 4.135 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.070 0.930 28 H 0.045 0.955 29 H 0.034 0.966 30 H 0.083 0.917 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.267 0.733 35 H 0.083 0.917 36 H 0.055 0.945 37 H 0.126 0.874 38 H 0.138 0.862 39 H 0.140 0.860 40 H 0.138 0.862 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.381 -8.329 22.866 25.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.067 4.067 3 H 0.093 0.907 4 C -0.125 4.125 5 C -0.109 4.109 6 N -0.200 5.200 7 C -0.130 4.130 8 C -0.035 4.035 9 C -0.553 4.553 10 H 0.052 0.948 11 C -0.182 4.182 12 N -0.588 5.588 13 Si 0.766 3.234 14 H -0.194 1.194 15 H -0.214 1.214 16 H -0.162 1.162 17 C -0.112 4.112 18 C -0.083 4.083 19 C -0.144 4.144 20 C -0.145 4.145 21 C -0.153 4.153 22 C -0.145 4.145 23 C -0.153 4.153 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.089 0.911 28 H 0.064 0.936 29 H 0.052 0.948 30 H 0.101 0.899 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.101 0.899 36 H 0.073 0.927 37 H 0.144 0.856 38 H 0.156 0.844 39 H 0.158 0.842 40 H 0.156 0.844 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -6.367 -8.964 22.948 25.446 hybrid contribution 0.829 0.910 -0.545 1.346 sum -5.538 -8.054 22.404 24.443 Atomic orbital electron populations 1.21850 0.93298 1.02500 1.02056 1.20117 0.96823 0.98718 0.91086 0.90734 1.21375 1.00059 0.99281 0.91802 1.22768 1.00906 0.95710 0.91548 1.68765 1.04170 1.45575 1.01486 1.24175 0.93277 0.97538 0.98034 1.20521 0.94662 0.96155 0.92165 1.21162 1.02371 1.03097 1.28659 0.94784 1.25901 0.99722 0.98770 0.93834 1.70058 1.22896 1.32890 1.32987 0.85809 0.77401 0.79578 0.80623 1.19421 1.21370 1.16208 1.23657 0.98111 0.97824 0.91633 1.19988 0.97599 0.94729 0.95954 1.21205 1.00649 0.94390 0.98183 1.21446 0.97915 1.00771 0.94394 1.21455 0.98687 0.94957 1.00180 1.21425 1.00037 0.95430 0.97643 1.21322 0.98465 1.00553 0.94991 0.92015 0.92184 0.91985 0.91134 0.93605 0.94782 0.89896 0.92820 0.91736 0.92378 0.92459 0.89882 0.92670 0.85581 0.84374 0.84177 0.84419 0.85612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 8.76 71.98 0.63 -1.97 16 2 C -0.05 -1.04 2.56 -11.54 -0.03 -1.07 16 3 H 0.07 1.62 7.88 -2.39 -0.02 1.60 16 4 C -0.09 -2.26 4.75 30.59 0.15 -2.11 16 5 C 0.02 0.57 4.57 86.30 0.39 0.97 16 6 N -0.48 -17.46 6.33 -927.93 -5.88 -23.34 16 7 C 0.00 -0.04 6.69 83.58 0.56 0.52 16 8 C -0.02 -0.73 2.96 -11.19 -0.03 -0.77 16 9 C -0.51 -29.20 9.37 25.60 0.24 -28.96 16 10 H 0.03 2.13 8.06 -2.91 -0.02 2.11 16 11 C 0.02 0.88 5.47 84.65 0.46 1.35 16 12 N -0.95 -59.02 13.96 21.45 0.30 -58.72 16 13 Si 0.94 43.99 27.14 68.60 1.86 45.85 16 14 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 15 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 16 H -0.24 -10.34 5.68 99.48 0.57 -9.77 16 17 C 0.02 0.65 7.25 83.57 0.61 1.26 16 18 C -0.08 -1.77 4.78 -19.87 -0.09 -1.87 16 19 C -0.13 -2.54 8.76 22.27 0.20 -2.34 16 20 C -0.13 -2.25 10.05 22.27 0.22 -2.02 16 21 C -0.13 -2.25 10.05 22.27 0.22 -2.03 16 22 C -0.13 -2.26 10.05 22.27 0.22 -2.04 16 23 C -0.14 -2.75 9.67 22.27 0.22 -2.53 16 24 H 0.06 1.09 7.37 -2.38 -0.02 1.07 16 25 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.06 1.15 6.56 -2.39 -0.02 1.13 16 27 H 0.07 1.79 7.59 -2.39 -0.02 1.77 16 28 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.03 1.08 7.30 -2.39 -0.02 1.06 16 30 H 0.08 2.22 6.50 -2.39 -0.02 2.21 16 31 H 0.05 2.34 7.37 -2.39 -0.02 2.33 16 32 H 0.06 2.66 7.12 -2.39 -0.02 2.65 16 33 H 0.06 2.69 7.04 -2.39 -0.02 2.67 16 34 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 35 H 0.08 2.99 8.14 -2.39 -0.02 2.97 16 36 H 0.05 2.22 7.87 -2.38 -0.02 2.20 16 37 H 0.13 2.32 7.16 -2.91 -0.02 2.30 16 38 H 0.14 1.81 8.06 -2.91 -0.02 1.79 16 39 H 0.14 1.63 8.06 -2.91 -0.02 1.60 16 40 H 0.14 1.82 8.06 -2.91 -0.02 1.79 16 41 H 0.13 2.29 7.95 -2.91 -0.02 2.26 16 Total: -1.00 -64.14 325.74 1.09 -63.05 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: 0.84 Total: 16.76 kcal Atomic # 6 Polarization: -47.57 SS G_CDS: 3.96 Total: -43.60 kcal Atomic # 7 Polarization: -76.48 SS G_CDS: -5.58 Total: -82.06 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 1.86 Total: 45.85 kcal Total: -64.14 1.09 -63.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597202895.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.422 kcal (2) G-P(sol) polarization free energy of solvation -64.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds