Wall clock time and date at job start Mon Mar 30 2020 06:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47185 * 2 1 4 4 C 1.52999 * 109.47385 * 119.99701 * 2 1 3 5 5 C 1.53005 * 109.47375 * 295.00513 * 4 2 1 6 6 N 1.46893 * 109.47246 * 179.97438 * 5 4 2 7 7 C 1.47486 * 110.99866 * 169.99837 * 6 5 4 8 8 C 1.53506 * 87.93221 * 221.29388 * 7 6 5 9 9 C 1.50697 * 114.17119 * 139.66929 * 8 7 6 10 10 H 1.08001 * 119.99810 * 0.02562 * 9 8 7 11 11 C 1.37880 * 120.00096 * 179.97438 * 9 8 7 12 12 N 1.31515 * 119.99835 * 179.97438 * 11 9 8 13 13 Si 1.86796 * 120.00136 * 0.02562 * 11 9 8 14 14 H 1.48501 * 109.47388 * 89.99831 * 13 11 9 15 15 H 1.48499 * 109.47115 * 209.99925 * 13 11 9 16 16 H 1.48505 * 109.46959 * 329.99506 * 13 11 9 17 17 C 1.47474 * 111.00100 * 74.02999 * 6 5 4 18 18 C 1.50695 * 109.47585 * 239.99959 * 2 1 3 19 19 C 1.38237 * 120.00158 * 299.72908 * 18 2 1 20 20 C 1.38230 * 120.00142 * 179.78658 * 19 18 2 21 21 C 1.38233 * 120.00083 * 0.43852 * 20 19 18 22 22 C 1.38230 * 119.99774 * 359.81020 * 21 20 19 23 23 C 1.38232 * 120.00216 * 359.97438 * 22 21 20 24 24 H 1.08996 * 109.47079 * 299.99913 * 1 2 3 25 25 H 1.08996 * 109.47116 * 60.00394 * 1 2 3 26 26 H 1.09003 * 109.46686 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47532 * 175.00245 * 4 2 1 28 28 H 1.09005 * 109.46952 * 54.99831 * 4 2 1 29 29 H 1.09003 * 109.46918 * 59.99195 * 5 4 2 30 30 H 1.09004 * 109.46612 * 300.00129 * 5 4 2 31 31 H 1.09000 * 113.47378 * 336.06597 * 7 6 5 32 32 H 1.08999 * 113.47621 * 106.52788 * 7 6 5 33 33 H 1.09003 * 114.17533 * 272.37734 * 8 7 6 34 34 H 0.97003 * 120.00161 * 179.97438 * 12 11 9 35 35 H 1.09008 * 113.47506 * 253.46575 * 17 6 5 36 36 H 1.08998 * 113.48033 * 23.93349 * 17 6 5 37 37 H 1.08007 * 119.99417 * 359.97438 * 19 18 2 38 38 H 1.08003 * 119.99712 * 180.27568 * 20 19 18 39 39 H 1.07999 * 120.00078 * 179.84040 * 21 20 19 40 40 H 1.08007 * 119.99829 * 179.97438 * 22 21 20 41 41 H 1.08004 * 120.00222 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 1.6352 0.0690 2.4954 6 7 2.1244 -0.6238 3.6948 7 6 1.9646 0.2194 4.8942 8 6 3.3518 -0.2577 5.3464 9 6 4.2050 0.8211 5.9622 10 1 3.8217 1.8267 6.0528 11 6 5.4744 0.5240 6.4110 12 7 6.2191 1.4656 6.9479 13 14 6.1370 -1.2155 6.2549 14 1 6.8316 -1.3656 4.9510 15 1 7.0937 -1.4817 7.3590 16 1 5.0122 -2.1823 6.3309 17 6 3.5826 -0.4596 3.8422 18 6 2.0324 -0.7104 -1.2304 19 6 1.7032 -2.0355 -1.4464 20 6 2.1604 -2.6858 -2.5772 21 6 2.9544 -2.0138 -3.4875 22 6 3.2879 -0.6902 -3.2690 23 6 2.8270 -0.0385 -2.1404 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1263 -0.7994 1.2056 28 1 1.6054 -1.7198 1.2952 29 1 0.5489 0.1472 2.5390 30 1 2.0698 1.0676 2.4494 31 1 1.9230 1.2859 4.6729 32 1 1.1579 -0.1073 5.5503 33 1 3.3395 -1.1820 5.9241 34 1 7.1121 1.2566 7.2640 35 1 4.1472 -1.3618 3.6067 36 1 3.9729 0.4257 3.3401 37 1 1.0862 -2.5617 -0.7330 38 1 1.8995 -3.7198 -2.7481 39 1 3.3137 -2.5226 -4.3698 40 1 3.9086 -0.1652 -3.9801 41 1 3.0879 0.9955 -1.9695 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597202896.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:49 Heat of formation + Delta-G solvation = 42.440920 kcal Electronic energy + Delta-G solvation = -18778.300203 eV Core-core repulsion = 16044.349003 eV Total energy + Delta-G solvation = -2733.951200 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.74022 -39.04666 -35.83878 -32.66411 -31.14570 -30.97566 -29.20184 -27.26827 -25.04849 -24.73688 -23.17222 -22.60005 -20.99885 -19.73717 -18.64806 -17.13287 -16.88181 -15.55698 -15.38860 -14.98956 -14.73631 -14.31121 -13.96164 -13.71189 -13.48329 -13.21669 -13.05895 -12.83244 -12.39548 -12.24117 -11.89930 -11.67625 -11.40159 -11.31518 -11.11893 -10.87557 -10.80211 -10.58707 -10.21288 -9.90416 -9.68196 -9.44574 -9.12447 -9.01511 -8.74953 -8.56106 -8.11927 -6.09928 -4.10377 1.27305 1.30605 3.30800 3.38167 3.42730 3.69182 4.42333 4.51504 4.67544 4.82430 4.89269 5.00100 5.09474 5.15173 5.18995 5.34915 5.39927 5.44825 5.53054 5.58504 5.78358 5.84402 5.89038 5.94377 5.98730 6.01380 6.07702 6.13390 6.26150 6.37645 6.39097 6.41855 6.43338 6.53195 6.55153 6.62796 6.73005 6.91647 7.01964 7.40192 7.70284 7.90368 8.49641 8.92650 9.52877 11.02632 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.024865 B = 0.004181 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.795735 B = 6695.351622 C = 7206.126824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.054 4.054 3 H 0.077 0.923 4 C -0.103 4.103 5 C 0.021 3.979 6 N -0.485 5.485 7 C 0.009 3.991 8 C -0.007 4.007 9 C -0.509 4.509 10 H 0.074 0.926 11 C 0.074 3.926 12 N -0.900 5.900 13 Si 0.877 3.123 14 H -0.276 1.276 15 H -0.288 1.288 16 H -0.261 1.261 17 C -0.010 4.010 18 C -0.068 4.068 19 C -0.114 4.114 20 C -0.120 4.120 21 C -0.130 4.130 22 C -0.120 4.120 23 C -0.119 4.119 24 H 0.062 0.938 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.037 0.963 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.264 0.736 35 H 0.057 0.943 36 H 0.064 0.936 37 H 0.122 0.878 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.119 0.881 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.264 -5.414 -18.946 21.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.073 4.073 3 H 0.095 0.905 4 C -0.141 4.141 5 C -0.108 4.108 6 N -0.207 5.207 7 C -0.120 4.120 8 C -0.026 4.026 9 C -0.547 4.547 10 H 0.092 0.908 11 C -0.128 4.128 12 N -0.538 5.538 13 Si 0.704 3.296 14 H -0.202 1.202 15 H -0.215 1.215 16 H -0.185 1.185 17 C -0.139 4.139 18 C -0.068 4.068 19 C -0.132 4.132 20 C -0.138 4.138 21 C -0.148 4.148 22 C -0.138 4.138 23 C -0.137 4.137 24 H 0.081 0.919 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.056 0.944 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.140 0.860 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.137 0.863 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -9.412 -6.033 -18.922 21.978 hybrid contribution 0.888 0.022 -0.269 0.928 sum -8.524 -6.011 -19.192 21.843 Atomic orbital electron populations 1.21874 0.94301 1.02092 1.01730 1.20200 0.96028 0.99181 0.91909 0.90473 1.21541 1.01223 0.99311 0.91995 1.22662 1.00277 0.96011 0.91886 1.68842 1.09432 1.40768 1.01637 1.23777 1.00054 0.95834 0.92314 1.20672 0.92522 0.97750 0.91677 1.20937 0.98631 0.95942 1.39179 0.90816 1.25004 0.96777 0.97025 0.94017 1.69912 1.10147 1.33026 1.40702 0.86822 0.79144 0.85705 0.77923 1.20191 1.21453 1.18536 1.24251 0.88742 0.99453 1.01446 1.19938 0.96854 0.94235 0.95788 1.21039 1.00287 0.94365 0.97460 1.21137 0.98227 0.99776 0.94692 1.21109 0.99168 0.94949 0.99579 1.21126 1.00045 0.95000 0.97644 1.21118 0.98086 1.00032 0.94467 0.91893 0.92911 0.92481 0.91850 0.91322 0.91329 0.94432 0.92196 0.91664 0.91999 0.92603 0.92466 0.91818 0.86041 0.86281 0.86415 0.86277 0.86145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 8.76 37.16 0.33 -1.13 16 2 C -0.05 -0.63 2.56 -91.77 -0.24 -0.86 16 3 H 0.08 0.89 7.88 -51.93 -0.41 0.48 16 4 C -0.10 -1.43 4.52 -26.73 -0.12 -1.55 16 5 C 0.02 0.32 4.58 -3.83 -0.02 0.31 16 6 N -0.48 -9.28 6.41 -244.65 -1.57 -10.85 16 7 C 0.01 0.18 7.27 -7.55 -0.05 0.13 16 8 C -0.01 -0.16 2.99 -91.24 -0.27 -0.44 16 9 C -0.51 -14.19 9.37 -34.44 -0.32 -14.51 16 10 H 0.07 2.22 8.06 -52.49 -0.42 1.79 16 11 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 12 N -0.90 -27.33 13.96 55.43 0.77 -26.55 16 13 Si 0.88 21.56 27.41 -169.99 -4.66 16.90 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 15 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 16 H -0.26 -6.19 6.22 56.52 0.35 -5.84 16 17 C -0.01 -0.21 6.11 -7.55 -0.05 -0.25 16 18 C -0.07 -0.79 4.78 -104.63 -0.50 -1.29 16 19 C -0.11 -1.26 8.76 -39.58 -0.35 -1.61 16 20 C -0.12 -1.22 10.05 -39.59 -0.40 -1.62 16 21 C -0.13 -1.28 10.05 -39.59 -0.40 -1.67 16 22 C -0.12 -1.22 10.05 -39.59 -0.40 -1.62 16 23 C -0.12 -1.32 9.67 -39.59 -0.38 -1.71 16 24 H 0.06 0.64 6.56 -51.93 -0.34 0.30 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.56 7.41 -51.93 -0.38 0.18 16 27 H 0.06 0.98 7.67 -51.93 -0.40 0.58 16 28 H 0.07 0.95 7.56 -51.93 -0.39 0.56 16 29 H 0.07 0.98 6.56 -51.93 -0.34 0.64 16 30 H 0.04 0.62 7.56 -51.93 -0.39 0.22 16 31 H 0.06 1.22 7.72 -51.93 -0.40 0.82 16 32 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.06 1.51 6.50 -51.93 -0.34 1.17 16 34 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 35 H 0.06 1.22 8.14 -51.92 -0.42 0.79 16 36 H 0.06 1.40 7.66 -51.93 -0.40 1.00 16 37 H 0.12 1.25 7.17 -52.48 -0.38 0.87 16 38 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 39 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 40 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 41 H 0.12 1.19 7.95 -52.48 -0.42 0.77 16 LS Contribution 326.37 15.07 4.92 4.92 Total: -1.00 -29.82 326.37 -10.53 -40.36 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -6.73 Total: 1.05 kcal Atomic # 6 Polarization: -22.55 SS G_CDS: -3.26 Total: -25.82 kcal Atomic # 7 Polarization: -36.61 SS G_CDS: -0.80 Total: -37.41 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.66 Total: 16.90 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.82 -10.53 -40.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597202896.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.798 kcal (2) G-P(sol) polarization free energy of solvation -29.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds