Wall clock time and date at job start Mon Mar 30 2020 06:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47185 * 2 1 4 4 C 1.52999 * 109.47385 * 119.99701 * 2 1 3 5 5 C 1.53005 * 109.47375 * 295.00513 * 4 2 1 6 6 N 1.46893 * 109.47246 * 179.97438 * 5 4 2 7 7 C 1.47486 * 110.99866 * 169.99837 * 6 5 4 8 8 C 1.53506 * 87.93221 * 221.29388 * 7 6 5 9 9 C 1.50697 * 114.17119 * 139.66929 * 8 7 6 10 10 H 1.08001 * 119.99810 * 0.02562 * 9 8 7 11 11 C 1.37880 * 120.00096 * 179.97438 * 9 8 7 12 12 N 1.31515 * 119.99835 * 179.97438 * 11 9 8 13 13 Si 1.86796 * 120.00136 * 0.02562 * 11 9 8 14 14 H 1.48501 * 109.47388 * 89.99831 * 13 11 9 15 15 H 1.48499 * 109.47115 * 209.99925 * 13 11 9 16 16 H 1.48505 * 109.46959 * 329.99506 * 13 11 9 17 17 C 1.47474 * 111.00100 * 74.02999 * 6 5 4 18 18 C 1.50695 * 109.47585 * 239.99959 * 2 1 3 19 19 C 1.38237 * 120.00158 * 299.72908 * 18 2 1 20 20 C 1.38230 * 120.00142 * 179.78658 * 19 18 2 21 21 C 1.38233 * 120.00083 * 0.43852 * 20 19 18 22 22 C 1.38230 * 119.99774 * 359.81020 * 21 20 19 23 23 C 1.38232 * 120.00216 * 359.97438 * 22 21 20 24 24 H 1.08996 * 109.47079 * 299.99913 * 1 2 3 25 25 H 1.08996 * 109.47116 * 60.00394 * 1 2 3 26 26 H 1.09003 * 109.46686 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47532 * 175.00245 * 4 2 1 28 28 H 1.09005 * 109.46952 * 54.99831 * 4 2 1 29 29 H 1.09003 * 109.46918 * 59.99195 * 5 4 2 30 30 H 1.09004 * 109.46612 * 300.00129 * 5 4 2 31 31 H 1.09000 * 113.47378 * 336.06597 * 7 6 5 32 32 H 1.08999 * 113.47621 * 106.52788 * 7 6 5 33 33 H 1.09003 * 114.17533 * 272.37734 * 8 7 6 34 34 H 0.97003 * 120.00161 * 179.97438 * 12 11 9 35 35 H 1.09008 * 113.47506 * 253.46575 * 17 6 5 36 36 H 1.08998 * 113.48033 * 23.93349 * 17 6 5 37 37 H 1.08007 * 119.99417 * 359.97438 * 19 18 2 38 38 H 1.08003 * 119.99712 * 180.27568 * 20 19 18 39 39 H 1.07999 * 120.00078 * 179.84040 * 21 20 19 40 40 H 1.08007 * 119.99829 * 179.97438 * 22 21 20 41 41 H 1.08004 * 120.00222 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 1.6352 0.0690 2.4954 6 7 2.1244 -0.6238 3.6948 7 6 1.9646 0.2194 4.8942 8 6 3.3518 -0.2577 5.3464 9 6 4.2050 0.8211 5.9622 10 1 3.8217 1.8267 6.0528 11 6 5.4744 0.5240 6.4110 12 7 6.2191 1.4656 6.9479 13 14 6.1370 -1.2155 6.2549 14 1 6.8316 -1.3656 4.9510 15 1 7.0937 -1.4817 7.3590 16 1 5.0122 -2.1823 6.3309 17 6 3.5826 -0.4596 3.8422 18 6 2.0324 -0.7104 -1.2304 19 6 1.7032 -2.0355 -1.4464 20 6 2.1604 -2.6858 -2.5772 21 6 2.9544 -2.0138 -3.4875 22 6 3.2879 -0.6902 -3.2690 23 6 2.8270 -0.0385 -2.1404 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1263 -0.7994 1.2056 28 1 1.6054 -1.7198 1.2952 29 1 0.5489 0.1472 2.5390 30 1 2.0698 1.0676 2.4494 31 1 1.9230 1.2859 4.6729 32 1 1.1579 -0.1073 5.5503 33 1 3.3395 -1.1820 5.9241 34 1 7.1121 1.2566 7.2640 35 1 4.1472 -1.3618 3.6067 36 1 3.9729 0.4257 3.3401 37 1 1.0862 -2.5617 -0.7330 38 1 1.8995 -3.7198 -2.7481 39 1 3.3137 -2.5226 -4.3698 40 1 3.9086 -0.1652 -3.9801 41 1 3.0879 0.9955 -1.9695 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597202896.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:49 Heat of formation + Delta-G solvation = 25.134309 kcal Electronic energy + Delta-G solvation = -18779.050674 eV Core-core repulsion = 16044.349003 eV Total energy + Delta-G solvation = -2734.701671 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.97106 -40.25414 -36.84262 -34.72729 -32.46526 -31.76541 -30.29946 -28.73188 -26.74015 -26.15684 -24.31245 -23.49169 -22.26863 -20.71257 -20.43344 -19.13623 -17.77502 -16.87106 -16.53715 -16.36615 -16.07840 -15.48470 -15.28674 -15.09893 -14.58656 -14.45363 -14.26982 -14.08890 -13.74360 -13.42996 -13.19231 -13.08455 -12.83624 -12.64108 -12.26071 -12.14768 -11.98957 -11.85658 -11.59145 -11.43374 -11.38807 -11.17664 -11.05725 -10.66952 -9.79695 -9.75495 -9.56324 -8.30520 -6.35650 0.48343 0.52521 1.36728 1.38193 1.49576 2.35778 2.89433 3.01879 3.24118 3.67106 3.86268 3.99524 4.15987 4.18002 4.19842 4.24538 4.31362 4.41830 4.42836 4.53332 4.62951 4.65051 4.70459 4.73031 4.75445 4.88459 4.98459 5.00667 5.05277 5.07101 5.18245 5.20107 5.30442 5.35369 5.48721 5.49919 5.61762 5.63540 5.64945 5.78935 6.15600 6.27832 6.30306 6.69930 7.31111 8.85633 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.024865 B = 0.004181 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.795735 B = 6695.351622 C = 7206.126824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.048 4.048 3 H 0.074 0.926 4 C -0.093 4.093 5 C 0.021 3.979 6 N -0.477 5.477 7 C 0.017 3.983 8 C -0.021 4.021 9 C -0.513 4.513 10 H 0.035 0.965 11 C 0.018 3.982 12 N -0.948 5.948 13 Si 0.941 3.059 14 H -0.268 1.268 15 H -0.285 1.285 16 H -0.244 1.244 17 C 0.000 4.000 18 C -0.083 4.083 19 C -0.126 4.126 20 C -0.127 4.127 21 C -0.135 4.135 22 C -0.128 4.128 23 C -0.136 4.136 24 H 0.063 0.937 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.044 0.956 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.030 0.970 31 H 0.055 0.945 32 H 0.083 0.917 33 H 0.062 0.938 34 H 0.267 0.733 35 H 0.063 0.937 36 H 0.052 0.948 37 H 0.127 0.873 38 H 0.139 0.861 39 H 0.141 0.859 40 H 0.138 0.862 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.130 -7.363 -20.711 24.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.067 4.067 3 H 0.092 0.908 4 C -0.131 4.131 5 C -0.108 4.108 6 N -0.199 5.199 7 C -0.112 4.112 8 C -0.040 4.040 9 C -0.552 4.552 10 H 0.053 0.947 11 C -0.180 4.180 12 N -0.588 5.588 13 Si 0.764 3.236 14 H -0.193 1.193 15 H -0.211 1.211 16 H -0.168 1.168 17 C -0.129 4.129 18 C -0.083 4.083 19 C -0.144 4.144 20 C -0.145 4.145 21 C -0.153 4.153 22 C -0.146 4.146 23 C -0.154 4.154 24 H 0.082 0.918 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.063 0.937 28 H 0.090 0.910 29 H 0.107 0.893 30 H 0.048 0.952 31 H 0.073 0.927 32 H 0.101 0.899 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.145 0.855 38 H 0.157 0.843 39 H 0.158 0.842 40 H 0.156 0.844 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -10.302 -7.983 -20.700 24.462 hybrid contribution 1.110 0.706 0.245 1.338 sum -9.193 -7.277 -20.456 23.578 Atomic orbital electron populations 1.21844 0.93082 1.02543 1.02144 1.20108 0.96979 0.98646 0.90937 0.90783 1.21440 1.00040 0.99465 0.92152 1.22744 1.01344 0.95543 0.91134 1.68812 1.07607 1.40881 1.02558 1.23664 0.98664 0.95808 0.93080 1.20657 0.94156 0.96501 0.92721 1.21162 0.99319 0.95531 1.39143 0.94711 1.25862 0.97078 1.01334 0.93742 1.70051 1.10794 1.35490 1.42477 0.85801 0.78904 0.80655 0.78192 1.19273 1.21122 1.16766 1.24006 0.90512 0.99201 0.99226 1.19994 0.97620 0.94717 0.95981 1.21207 1.00728 0.94332 0.98155 1.21446 0.97929 1.00803 0.94340 1.21454 0.98656 0.94931 1.00226 1.21424 1.00035 0.95451 0.97651 1.21324 0.98429 1.00577 0.95052 0.91795 0.92165 0.91998 0.93719 0.90990 0.89265 0.95211 0.92705 0.89878 0.92011 0.92424 0.91881 0.92962 0.85525 0.84335 0.84161 0.84450 0.85677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 8.76 71.98 0.63 -1.93 16 2 C -0.05 -1.04 2.56 -11.54 -0.03 -1.07 16 3 H 0.07 1.64 7.88 -2.39 -0.02 1.63 16 4 C -0.09 -2.45 4.52 30.60 0.14 -2.31 16 5 C 0.02 0.62 4.58 86.31 0.40 1.02 16 6 N -0.48 -17.40 6.41 -927.94 -5.95 -23.35 16 7 C 0.02 0.66 7.27 83.57 0.61 1.27 16 8 C -0.02 -0.99 2.99 -11.20 -0.03 -1.02 16 9 C -0.51 -29.22 9.37 25.60 0.24 -28.98 16 10 H 0.03 2.18 8.06 -2.91 -0.02 2.16 16 11 C 0.02 1.02 5.47 84.66 0.46 1.48 16 12 N -0.95 -59.02 13.96 21.45 0.30 -58.73 16 13 Si 0.94 44.23 27.41 68.60 1.88 46.11 16 14 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 15 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 16 H -0.24 -10.73 6.22 99.48 0.62 -10.11 16 17 C 0.00 0.00 6.11 83.57 0.51 0.51 16 18 C -0.08 -1.83 4.78 -19.87 -0.09 -1.92 16 19 C -0.13 -2.60 8.76 22.27 0.20 -2.40 16 20 C -0.13 -2.31 10.05 22.27 0.22 -2.09 16 21 C -0.13 -2.33 10.05 22.27 0.22 -2.11 16 22 C -0.13 -2.36 10.05 22.27 0.22 -2.14 16 23 C -0.14 -2.87 9.67 22.27 0.22 -2.65 16 24 H 0.06 1.15 6.56 -2.39 -0.02 1.14 16 25 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.06 1.08 7.41 -2.39 -0.02 1.06 16 27 H 0.04 1.34 7.67 -2.39 -0.02 1.32 16 28 H 0.07 1.85 7.56 -2.38 -0.02 1.83 16 29 H 0.09 2.33 6.56 -2.39 -0.02 2.32 16 30 H 0.03 0.95 7.56 -2.38 -0.02 0.93 16 31 H 0.05 2.22 7.72 -2.39 -0.02 2.20 16 32 H 0.08 3.01 8.14 -2.39 -0.02 2.99 16 33 H 0.06 2.91 6.50 -2.39 -0.02 2.89 16 34 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 35 H 0.06 2.57 8.14 -2.38 -0.02 2.55 16 36 H 0.05 2.29 7.66 -2.39 -0.02 2.28 16 37 H 0.13 2.37 7.17 -2.91 -0.02 2.35 16 38 H 0.14 1.88 8.06 -2.91 -0.02 1.85 16 39 H 0.14 1.71 8.06 -2.91 -0.02 1.69 16 40 H 0.14 1.93 8.06 -2.91 -0.02 1.90 16 41 H 0.13 2.39 7.95 -2.91 -0.02 2.36 16 Total: -1.00 -64.19 326.37 1.03 -63.17 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: 0.89 Total: 17.15 kcal Atomic # 6 Polarization: -48.26 SS G_CDS: 3.91 Total: -44.35 kcal Atomic # 7 Polarization: -76.42 SS G_CDS: -5.65 Total: -82.07 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 1.88 Total: 46.11 kcal Total: -64.19 1.03 -63.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597202896.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.301 kcal (2) G-P(sol) polarization free energy of solvation -64.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds