Wall clock time and date at job start Mon Mar 30 2020 06:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 5 5 C 1.50707 * 109.47009 * 65.00166 * 4 2 1 6 6 C 1.38234 * 119.99751 * 269.73081 * 5 4 2 7 7 C 1.38237 * 119.99761 * 179.76401 * 6 5 4 8 8 C 1.38235 * 119.99919 * 0.50741 * 7 6 5 9 9 C 1.38237 * 119.99897 * 359.74147 * 8 7 6 10 10 C 1.38228 * 120.00122 * 0.02562 * 9 8 7 11 11 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 12 12 N 1.46895 * 109.46799 * 294.99463 * 11 2 1 13 13 C 1.47476 * 111.00568 * 265.97151 * 12 11 2 14 14 C 1.53512 * 87.93660 * 221.29783 * 13 12 11 15 15 C 1.50698 * 114.34688 * 139.67877 * 14 13 12 16 16 H 1.07996 * 120.00449 * 266.07965 * 15 14 13 17 17 C 1.37880 * 119.99668 * 86.07566 * 15 14 13 18 18 N 1.31520 * 119.99807 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00023 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46783 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.46959 * 120.00063 * 19 17 15 22 22 H 1.48496 * 109.47054 * 240.00223 * 19 17 15 23 23 C 1.47484 * 111.00142 * 169.99855 * 12 11 2 24 24 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 25 25 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 26 26 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47465 * 185.00197 * 4 2 1 28 28 H 1.08998 * 109.47565 * 305.00629 * 4 2 1 29 29 H 1.08002 * 120.00388 * 359.97438 * 6 5 4 30 30 H 1.08005 * 120.00183 * 180.22942 * 7 6 5 31 31 H 1.07996 * 119.99926 * 179.72616 * 8 7 6 32 32 H 1.08002 * 119.99929 * 179.97438 * 9 8 7 33 33 H 1.07999 * 120.00483 * 179.97438 * 10 9 8 34 34 H 1.09001 * 109.47326 * 54.99931 * 11 2 1 35 35 H 1.09000 * 109.46904 * 175.00284 * 11 2 1 36 36 H 1.08998 * 113.47599 * 336.06755 * 13 12 11 37 37 H 1.09002 * 113.47566 * 106.53044 * 13 12 11 38 38 H 1.08997 * 114.17220 * 272.37692 * 14 13 12 39 39 H 0.97003 * 119.99263 * 179.97438 * 18 17 15 40 40 H 1.09001 * 113.47751 * 253.47685 * 23 12 11 41 41 H 1.09001 * 113.47153 * 23.88025 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 6 0.4381 -0.2089 -3.1030 7 6 0.0702 0.5083 -4.2260 8 6 0.9103 1.4842 -4.7287 9 6 2.1159 1.7465 -4.1053 10 6 2.4816 1.0327 -2.9795 11 6 2.0400 -0.7213 1.2493 12 7 1.6515 0.0374 2.4456 13 6 2.7284 0.9545 2.8629 14 6 2.4290 0.5564 4.3149 15 6 3.6536 0.3738 5.1741 16 1 4.0892 -0.6074 5.2919 17 6 4.2178 1.4594 5.8098 18 7 3.6871 2.6542 5.6666 19 14 5.7361 1.2332 6.8743 20 1 6.1342 -0.1975 6.8711 21 1 6.8471 2.0568 6.3333 22 1 5.4344 1.6605 8.2641 23 6 1.9135 -0.7388 3.6720 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 3.1263 -0.7996 -1.2055 28 1 1.6054 -1.7198 -1.2952 29 1 -0.2161 -0.9747 -2.7131 30 1 -0.8716 0.3032 -4.7133 31 1 0.6249 2.0415 -5.6087 32 1 2.7725 2.5087 -4.4983 33 1 3.4237 1.2373 -2.4926 34 1 1.6054 -1.7199 1.2952 35 1 3.1263 -0.7995 1.2056 36 1 3.7172 0.6462 2.5231 37 1 2.5153 2.0014 2.6469 38 1 1.6545 1.1570 4.7917 39 1 4.0839 3.4179 6.1142 40 1 1.0097 -1.1269 4.1417 41 1 2.6840 -1.4997 3.5479 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597204245.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:04 Heat of formation + Delta-G solvation = 39.625702 kcal Electronic energy + Delta-G solvation = -18734.963606 eV Core-core repulsion = 16000.890329 eV Total energy + Delta-G solvation = -2734.073277 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.58354 -38.84663 -35.65228 -32.63944 -31.28167 -30.95133 -28.44696 -26.68555 -25.43375 -24.72843 -22.86111 -22.52273 -21.10261 -19.61257 -18.56044 -16.88908 -16.54332 -15.39516 -15.25670 -14.88511 -14.63115 -14.43224 -13.90873 -13.69948 -13.48562 -13.09652 -12.87685 -12.44870 -12.24963 -11.84197 -11.65765 -11.37414 -11.22800 -11.13717 -11.01413 -10.81598 -10.68488 -10.60306 -10.40471 -10.06758 -9.62766 -9.15954 -8.95793 -8.90841 -8.66429 -8.42668 -7.92459 -6.04594 -4.08899 1.31783 1.34709 3.27891 3.36208 3.39739 3.73177 4.40512 4.68892 4.78502 4.91265 5.00975 5.07313 5.12684 5.24764 5.37352 5.45052 5.47569 5.55148 5.68488 5.84815 5.93027 5.95609 6.00349 6.02065 6.08895 6.28541 6.30604 6.38695 6.43612 6.45179 6.52218 6.55842 6.61183 6.70308 6.72873 6.84306 6.96972 7.17604 7.25624 7.74573 7.93365 8.14027 8.39381 8.94637 9.56020 11.05005 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.034453 B = 0.003628 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.513153 B = 7715.688714 C = 8090.665916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.074 4.074 3 H 0.070 0.930 4 C -0.080 4.080 5 C -0.069 4.069 6 C -0.116 4.116 7 C -0.122 4.122 8 C -0.131 4.131 9 C -0.119 4.119 10 C -0.118 4.118 11 C 0.026 3.974 12 N -0.482 5.482 13 C 0.005 3.995 14 C 0.041 3.959 15 C -0.515 4.515 16 H 0.057 0.943 17 C 0.066 3.934 18 N -0.886 5.886 19 Si 0.890 3.110 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.283 1.283 23 C -0.005 4.005 24 H 0.047 0.953 25 H 0.068 0.932 26 H 0.044 0.956 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.120 0.880 30 H 0.118 0.882 31 H 0.117 0.883 32 H 0.119 0.881 33 H 0.121 0.879 34 H 0.059 0.941 35 H 0.038 0.962 36 H 0.051 0.949 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.261 0.739 40 H 0.060 0.940 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.782 -4.617 -17.999 19.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.093 4.093 3 H 0.088 0.912 4 C -0.118 4.118 5 C -0.069 4.069 6 C -0.134 4.134 7 C -0.140 4.140 8 C -0.149 4.149 9 C -0.137 4.137 10 C -0.136 4.136 11 C -0.103 4.103 12 N -0.204 5.204 13 C -0.124 4.124 14 C 0.022 3.978 15 C -0.554 4.554 16 H 0.076 0.924 17 C -0.137 4.137 18 N -0.523 5.523 19 Si 0.718 3.282 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.209 1.209 23 C -0.134 4.134 24 H 0.066 0.934 25 H 0.087 0.913 26 H 0.063 0.937 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.138 0.862 30 H 0.136 0.864 31 H 0.135 0.865 32 H 0.137 0.863 33 H 0.139 0.861 34 H 0.078 0.922 35 H 0.056 0.944 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.439 -4.196 -18.125 19.383 hybrid contribution 1.727 -0.334 0.516 1.833 sum -3.713 -4.530 -17.609 18.557 Atomic orbital electron populations 1.21757 0.94869 1.00987 1.01834 1.20959 0.96567 0.99675 0.92052 0.91155 1.20733 1.01132 0.98211 0.91711 1.19939 0.94368 0.96472 0.96102 1.21074 0.96323 1.00208 0.95773 1.21122 0.99518 0.96604 0.96730 1.21095 0.94921 0.98609 1.00289 1.21132 0.96848 0.99625 0.96145 1.21108 0.99907 0.96162 0.96450 1.22666 0.98009 0.97164 0.92492 1.68788 1.39729 1.11634 1.00205 1.24080 0.91501 0.96718 1.00082 1.20093 0.96366 0.90408 0.90971 1.21085 1.11152 0.94141 1.28998 0.92447 1.25025 0.97228 0.95305 0.96102 1.69986 1.40168 0.98988 1.43206 0.86571 0.83052 0.78245 0.80346 1.19741 1.21005 1.20907 1.23976 0.98648 0.98694 0.92095 0.93445 0.91328 0.93674 0.91153 0.91138 0.86156 0.86368 0.86472 0.86296 0.86095 0.92198 0.94403 0.93032 0.92007 0.91891 0.92951 0.92186 0.93021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 8.66 37.16 0.32 -1.59 16 2 C -0.07 -1.07 2.59 -90.62 -0.23 -1.30 16 3 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 4 C -0.08 -0.96 4.84 -27.88 -0.13 -1.10 16 5 C -0.07 -0.82 4.70 -104.62 -0.49 -1.31 16 6 C -0.12 -1.27 7.98 -39.58 -0.32 -1.59 16 7 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 8 C -0.13 -1.31 10.05 -39.58 -0.40 -1.71 16 9 C -0.12 -1.27 10.05 -39.59 -0.40 -1.66 16 10 C -0.12 -1.38 9.70 -39.59 -0.38 -1.77 16 11 C 0.03 0.43 4.21 -3.82 -0.02 0.41 16 12 N -0.48 -9.68 5.79 -244.63 -1.42 -11.10 16 13 C 0.01 0.12 7.28 -7.55 -0.06 0.06 16 14 C 0.04 1.03 3.76 -91.24 -0.34 0.68 16 15 C -0.52 -14.11 8.83 -34.44 -0.30 -14.41 16 16 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 17 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 18 N -0.89 -25.68 13.26 55.43 0.74 -24.94 16 19 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 20 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 C -0.01 -0.11 7.25 -7.55 -0.05 -0.17 16 24 H 0.05 0.62 6.28 -51.93 -0.33 0.29 16 25 H 0.07 1.09 7.75 -51.93 -0.40 0.69 16 26 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.83 8.08 -51.93 -0.42 0.41 16 28 H 0.07 0.78 8.08 -51.93 -0.42 0.36 16 29 H 0.12 1.18 8.05 -52.49 -0.42 0.75 16 30 H 0.12 0.94 8.06 -52.48 -0.42 0.51 16 31 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 32 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 33 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 34 H 0.06 0.93 8.08 -51.93 -0.42 0.51 16 35 H 0.04 0.65 7.30 -51.93 -0.38 0.27 16 36 H 0.05 1.20 7.38 -51.93 -0.38 0.82 16 37 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 38 H 0.06 1.75 8.11 -51.93 -0.42 1.32 16 39 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 40 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.05 1.08 7.87 -51.93 -0.41 0.67 16 LS Contribution 333.22 15.07 5.02 5.02 Total: -1.00 -28.60 333.22 -10.91 -39.52 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -6.93 Total: 0.78 kcal Atomic # 6 Polarization: -22.05 SS G_CDS: -3.30 Total: -25.35 kcal Atomic # 7 Polarization: -35.36 SS G_CDS: -0.68 Total: -36.04 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.60 -10.91 -39.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597204245.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.142 kcal (2) G-P(sol) polarization free energy of solvation -28.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds