Wall clock time and date at job start Mon Mar 30 2020 06:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 5 5 C 1.50707 * 109.47009 * 65.00166 * 4 2 1 6 6 C 1.38234 * 119.99751 * 269.73081 * 5 4 2 7 7 C 1.38237 * 119.99761 * 179.76401 * 6 5 4 8 8 C 1.38235 * 119.99919 * 0.50741 * 7 6 5 9 9 C 1.38237 * 119.99897 * 359.74147 * 8 7 6 10 10 C 1.38228 * 120.00122 * 0.02562 * 9 8 7 11 11 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 12 12 N 1.46895 * 109.46799 * 294.99463 * 11 2 1 13 13 C 1.47476 * 111.00568 * 265.97151 * 12 11 2 14 14 C 1.53512 * 87.93660 * 221.29783 * 13 12 11 15 15 C 1.50698 * 114.34688 * 139.67877 * 14 13 12 16 16 H 1.07996 * 120.00449 * 266.07965 * 15 14 13 17 17 C 1.37880 * 119.99668 * 86.07566 * 15 14 13 18 18 N 1.31520 * 119.99807 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00023 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46783 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.46959 * 120.00063 * 19 17 15 22 22 H 1.48496 * 109.47054 * 240.00223 * 19 17 15 23 23 C 1.47484 * 111.00142 * 169.99855 * 12 11 2 24 24 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 25 25 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 26 26 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47465 * 185.00197 * 4 2 1 28 28 H 1.08998 * 109.47565 * 305.00629 * 4 2 1 29 29 H 1.08002 * 120.00388 * 359.97438 * 6 5 4 30 30 H 1.08005 * 120.00183 * 180.22942 * 7 6 5 31 31 H 1.07996 * 119.99926 * 179.72616 * 8 7 6 32 32 H 1.08002 * 119.99929 * 179.97438 * 9 8 7 33 33 H 1.07999 * 120.00483 * 179.97438 * 10 9 8 34 34 H 1.09001 * 109.47326 * 54.99931 * 11 2 1 35 35 H 1.09000 * 109.46904 * 175.00284 * 11 2 1 36 36 H 1.08998 * 113.47599 * 336.06755 * 13 12 11 37 37 H 1.09002 * 113.47566 * 106.53044 * 13 12 11 38 38 H 1.08997 * 114.17220 * 272.37692 * 14 13 12 39 39 H 0.97003 * 119.99263 * 179.97438 * 18 17 15 40 40 H 1.09001 * 113.47751 * 253.47685 * 23 12 11 41 41 H 1.09001 * 113.47153 * 23.88025 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 6 0.4381 -0.2089 -3.1030 7 6 0.0702 0.5083 -4.2260 8 6 0.9103 1.4842 -4.7287 9 6 2.1159 1.7465 -4.1053 10 6 2.4816 1.0327 -2.9795 11 6 2.0400 -0.7213 1.2493 12 7 1.6515 0.0374 2.4456 13 6 2.7284 0.9545 2.8629 14 6 2.4290 0.5564 4.3149 15 6 3.6536 0.3738 5.1741 16 1 4.0892 -0.6074 5.2919 17 6 4.2178 1.4594 5.8098 18 7 3.6871 2.6542 5.6666 19 14 5.7361 1.2332 6.8743 20 1 6.1342 -0.1975 6.8711 21 1 6.8471 2.0568 6.3333 22 1 5.4344 1.6605 8.2641 23 6 1.9135 -0.7388 3.6720 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 3.1263 -0.7996 -1.2055 28 1 1.6054 -1.7198 -1.2952 29 1 -0.2161 -0.9747 -2.7131 30 1 -0.8716 0.3032 -4.7133 31 1 0.6249 2.0415 -5.6087 32 1 2.7725 2.5087 -4.4983 33 1 3.4237 1.2373 -2.4926 34 1 1.6054 -1.7199 1.2952 35 1 3.1263 -0.7995 1.2056 36 1 3.7172 0.6462 2.5231 37 1 2.5153 2.0014 2.6469 38 1 1.6545 1.1570 4.7917 39 1 4.0839 3.4179 6.1142 40 1 1.0097 -1.1269 4.1417 41 1 2.6840 -1.4997 3.5479 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597204245.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:04 Heat of formation + Delta-G solvation = 24.673790 kcal Electronic energy + Delta-G solvation = -18735.611969 eV Core-core repulsion = 16000.890329 eV Total energy + Delta-G solvation = -2734.721641 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.84734 -40.13394 -36.82453 -34.64265 -32.38789 -31.75131 -30.06003 -27.73955 -27.14928 -26.54047 -24.34168 -23.38216 -22.14732 -20.79347 -20.44091 -18.65968 -17.60325 -16.74533 -16.47570 -16.31694 -16.07701 -15.69365 -15.38008 -15.14035 -14.50064 -14.18850 -14.07362 -13.66940 -13.50651 -13.32564 -13.13604 -13.05628 -12.90416 -12.40923 -12.34002 -12.20043 -11.98362 -11.88627 -11.76783 -11.46297 -11.28522 -11.06380 -10.82510 -10.50516 -9.76456 -9.63744 -9.51889 -8.15803 -6.27349 0.49935 0.54312 1.41102 1.42700 1.54562 2.41875 2.90376 3.13454 3.34608 3.78746 3.91229 4.07198 4.20010 4.20453 4.26959 4.33400 4.35796 4.49678 4.50319 4.61208 4.65921 4.71654 4.78311 4.87499 4.88396 4.92707 4.97788 5.03524 5.11483 5.21825 5.23586 5.25732 5.39287 5.51653 5.60773 5.62488 5.63121 5.66480 5.80813 5.85097 6.17958 6.29806 6.43964 6.82603 7.41316 8.94189 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.034453 B = 0.003628 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.513153 B = 7715.688714 C = 8090.665916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.067 4.067 3 H 0.045 0.955 4 C -0.071 4.071 5 C -0.085 4.085 6 C -0.124 4.124 7 C -0.127 4.127 8 C -0.135 4.135 9 C -0.130 4.130 10 C -0.138 4.138 11 C 0.025 3.975 12 N -0.477 5.477 13 C 0.017 3.983 14 C 0.020 3.980 15 C -0.530 4.530 16 H 0.059 0.941 17 C 0.013 3.987 18 N -0.923 5.923 19 Si 0.959 3.041 20 H -0.263 1.263 21 H -0.280 1.280 22 H -0.279 1.279 23 C 0.009 3.991 24 H 0.055 0.945 25 H 0.043 0.957 26 H 0.061 0.939 27 H 0.070 0.930 28 H 0.085 0.915 29 H 0.133 0.867 30 H 0.141 0.859 31 H 0.140 0.860 32 H 0.134 0.866 33 H 0.119 0.881 34 H 0.080 0.920 35 H 0.035 0.965 36 H 0.048 0.952 37 H 0.041 0.959 38 H 0.028 0.972 39 H 0.262 0.738 40 H 0.073 0.927 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.846 -5.984 -19.336 20.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.086 4.086 3 H 0.064 0.936 4 C -0.109 4.109 5 C -0.085 4.085 6 C -0.142 4.142 7 C -0.145 4.145 8 C -0.153 4.153 9 C -0.148 4.148 10 C -0.156 4.156 11 C -0.103 4.103 12 N -0.199 5.199 13 C -0.112 4.112 14 C 0.001 3.999 15 C -0.568 4.568 16 H 0.078 0.922 17 C -0.186 4.186 18 N -0.561 5.561 19 Si 0.784 3.216 20 H -0.187 1.187 21 H -0.206 1.206 22 H -0.205 1.205 23 C -0.119 4.119 24 H 0.074 0.926 25 H 0.063 0.937 26 H 0.080 0.920 27 H 0.088 0.912 28 H 0.104 0.896 29 H 0.151 0.849 30 H 0.159 0.841 31 H 0.158 0.842 32 H 0.152 0.848 33 H 0.137 0.863 34 H 0.098 0.902 35 H 0.053 0.947 36 H 0.067 0.933 37 H 0.059 0.941 38 H 0.047 0.953 39 H 0.071 0.929 40 H 0.091 0.909 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.509 -5.580 -19.470 20.990 hybrid contribution 1.688 0.106 0.868 1.901 sum -3.820 -5.474 -18.602 19.763 Atomic orbital electron populations 1.21683 0.94227 1.01790 1.01048 1.20863 0.96997 0.98369 0.92342 0.93594 1.20619 1.01142 0.98591 0.90506 1.19985 0.95138 0.96978 0.96405 1.21286 0.96097 1.00672 0.96117 1.21464 1.00411 0.96160 0.96424 1.21446 0.94481 0.98538 1.00818 1.21403 0.97596 0.99863 0.95889 1.21274 1.00211 0.96823 0.97280 1.22754 0.98128 0.97835 0.91615 1.68739 1.38460 1.11362 1.01351 1.23805 0.92210 0.96308 0.98893 1.20043 0.95323 0.92814 0.91680 1.21416 1.11782 0.94260 1.29367 0.92245 1.25860 1.00308 0.94945 0.97499 1.70114 1.41822 0.99822 1.44392 0.85494 0.79151 0.78551 0.78393 1.18732 1.20626 1.20526 1.23809 0.99200 0.97037 0.91894 0.92567 0.93747 0.92015 0.91181 0.89599 0.84932 0.84077 0.84185 0.84781 0.86330 0.90202 0.94672 0.93348 0.94050 0.95343 0.92869 0.90884 0.92127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.45 8.66 71.98 0.62 -2.83 16 2 C -0.07 -1.87 2.59 -10.79 -0.03 -1.90 16 3 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 4 C -0.07 -1.60 4.84 29.85 0.14 -1.46 16 5 C -0.08 -1.92 4.70 -19.86 -0.09 -2.02 16 6 C -0.12 -2.47 7.98 22.27 0.18 -2.29 16 7 C -0.13 -2.25 10.05 22.27 0.22 -2.03 16 8 C -0.13 -2.40 10.05 22.27 0.22 -2.17 16 9 C -0.13 -2.58 10.05 22.27 0.22 -2.35 16 10 C -0.14 -3.15 9.70 22.27 0.22 -2.93 16 11 C 0.03 0.81 4.21 86.31 0.36 1.17 16 12 N -0.48 -19.10 5.79 -927.89 -5.37 -24.47 16 13 C 0.02 0.82 7.28 83.57 0.61 1.43 16 14 C 0.02 1.06 3.76 -11.20 -0.04 1.02 16 15 C -0.53 -29.31 8.83 25.60 0.23 -29.08 16 16 H 0.06 3.18 7.81 -2.91 -0.02 3.16 16 17 C 0.01 0.73 5.46 84.65 0.46 1.19 16 18 N -0.92 -54.74 13.26 21.45 0.28 -54.46 16 19 Si 0.96 43.44 29.54 68.60 2.03 45.47 16 20 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 21 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 22 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 23 C 0.01 0.39 7.25 83.57 0.61 1.00 16 24 H 0.06 1.38 6.28 -2.39 -0.01 1.37 16 25 H 0.04 1.38 7.75 -2.39 -0.02 1.36 16 26 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 27 H 0.07 1.57 8.08 -2.39 -0.02 1.55 16 28 H 0.09 1.67 8.08 -2.39 -0.02 1.65 16 29 H 0.13 2.23 8.05 -2.91 -0.02 2.21 16 30 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 31 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 32 H 0.13 2.13 8.06 -2.91 -0.02 2.11 16 33 H 0.12 2.63 8.06 -2.91 -0.02 2.60 16 34 H 0.08 2.28 8.08 -2.39 -0.02 2.26 16 35 H 0.03 1.16 7.30 -2.39 -0.02 1.14 16 36 H 0.05 2.29 7.38 -2.39 -0.02 2.27 16 37 H 0.04 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.03 1.65 8.11 -2.39 -0.02 1.63 16 39 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 40 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 41 H 0.06 2.44 7.87 -2.39 -0.02 2.42 16 Total: -1.00 -61.76 333.22 1.85 -59.92 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: 0.97 Total: 16.80 kcal Atomic # 6 Polarization: -47.19 SS G_CDS: 3.94 Total: -43.25 kcal Atomic # 7 Polarization: -73.84 SS G_CDS: -5.08 Total: -78.93 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -61.76 1.85 -59.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597204245.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.589 kcal (2) G-P(sol) polarization free energy of solvation -61.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds