Wall clock time and date at job start Mon Mar 30 2020 07:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46848 * 60.00326 * 8 6 4 10 10 H 1.48500 * 109.47035 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47237 * 300.00475 * 8 6 4 12 12 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 13 13 O 1.21290 * 119.99902 * 119.99996 * 12 2 1 14 14 N 1.34777 * 120.00075 * 300.00543 * 12 2 1 15 15 C 1.39047 * 120.00035 * 179.97438 * 14 12 2 16 16 N 1.29574 * 124.93129 * 359.69530 * 15 14 12 17 17 C 1.32062 * 116.92402 * 179.77117 * 16 15 14 18 18 C 1.33536 * 114.52791 * 0.51513 * 17 16 15 19 19 Cl 1.73599 * 125.97683 * 179.72631 * 18 17 16 20 20 S 1.70961 * 124.92912 * 179.97438 * 15 14 12 21 21 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 24 24 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 25 25 H 0.96996 * 119.99636 * 359.97438 * 14 12 2 26 26 H 1.08005 * 122.73636 * 180.26395 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.8258 -2.5200 -4.0078 10 1 1.8268 -0.4196 -5.2205 11 1 3.8063 -1.1207 -4.0083 12 6 2.0324 -0.7104 1.2304 13 8 2.7297 -1.6965 1.1190 14 7 1.7068 -0.2501 2.4545 15 6 2.1699 -0.9059 3.5898 16 7 2.9130 -1.9673 3.5822 17 6 3.2666 -2.4582 4.7561 18 6 2.7897 -1.7837 5.8054 19 17 3.0624 -2.1703 7.4757 20 16 1.8359 -0.4327 5.1983 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 0.7093 1.1619 -3.4844 25 1 1.1493 0.5387 2.5435 26 1 3.8872 -3.3360 4.8592 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597297665.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:24 Heat of formation + Delta-G solvation = 10.012303 kcal Electronic energy + Delta-G solvation = -14673.453300 eV Core-core repulsion = 11905.490717 eV Total energy + Delta-G solvation = -2767.962584 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 260.013 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.18347 -38.54907 -36.83079 -34.40768 -33.89908 -30.73791 -28.97537 -25.35940 -25.18517 -22.99127 -21.16722 -19.30222 -18.66774 -16.72152 -16.19061 -16.01896 -15.31499 -15.08721 -14.59389 -13.93927 -13.68883 -13.23050 -12.73672 -12.31841 -12.25202 -11.66776 -11.10549 -10.94987 -10.88752 -10.78490 -10.49877 -10.24045 -10.06717 -9.76666 -9.28902 -9.12935 -8.70415 -8.43315 -8.08116 -6.13333 -4.17571 0.63639 0.64750 1.42840 2.09715 2.79410 3.24039 3.32447 3.34901 3.42051 3.58618 4.38136 4.64038 5.20494 5.22754 5.70684 5.93292 6.40695 6.50493 6.64834 6.74759 7.22252 7.39098 7.65880 7.85791 7.98249 8.19408 8.85535 8.91517 9.48663 10.94196 Molecular weight = 260.01amu Principal moments of inertia in cm(-1) A = 0.056823 B = 0.004411 C = 0.004142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.638996 B = 6346.240175 C = 6758.062764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.038 3.962 3 H 0.059 0.941 4 C -0.507 4.507 5 H 0.076 0.924 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.904 3.096 9 H -0.275 1.275 10 H -0.287 1.287 11 H -0.275 1.275 12 C 0.509 3.491 13 O -0.467 6.467 14 N -0.640 5.640 15 C 0.303 3.697 16 N -0.478 5.478 17 C 0.101 3.899 18 C -0.232 4.232 19 Cl -0.009 7.009 20 S 0.138 5.862 21 H 0.013 0.987 22 H 0.035 0.965 23 H 0.098 0.902 24 H 0.263 0.737 25 H 0.420 0.580 26 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.327 -0.032 16.476 16.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.017 3.983 3 H 0.077 0.923 4 C -0.545 4.545 5 H 0.094 0.906 6 C -0.140 4.140 7 N -0.534 5.534 8 Si 0.732 3.268 9 H -0.201 1.201 10 H -0.213 1.213 11 H -0.201 1.201 12 C 0.296 3.704 13 O -0.333 6.333 14 N -0.293 5.293 15 C -0.066 4.066 16 N -0.200 5.200 17 C -0.053 4.053 18 C -0.381 4.381 19 Cl 0.019 6.981 20 S 0.387 5.613 21 H 0.032 0.968 22 H 0.054 0.946 23 H 0.117 0.883 24 H 0.073 0.927 25 H 0.258 0.742 26 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -0.307 -0.070 16.166 16.169 hybrid contribution 0.545 -0.778 -0.428 1.042 sum 0.237 -0.847 15.738 15.762 Atomic orbital electron populations 1.21813 0.96090 1.00264 1.01304 1.18954 0.94398 0.96992 0.87998 0.92302 1.21063 1.31614 1.13118 0.88723 0.90633 1.24931 0.94908 0.95006 0.99174 1.69840 1.36722 1.22884 1.23950 0.86449 0.79349 0.79717 0.81333 1.20086 1.21287 1.20084 1.22732 0.79305 0.85199 0.83135 1.90674 1.33477 1.24310 1.84851 1.44254 1.51511 1.30515 1.02979 1.24077 0.96465 0.93818 0.92247 1.66865 1.16421 1.10827 1.25881 1.21853 0.98959 1.00382 0.84098 1.26370 1.14986 1.05527 0.91190 1.98337 1.95285 1.92976 1.11476 1.83922 1.50688 1.28067 0.98669 0.96822 0.94613 0.88327 0.92693 0.74202 0.80027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 8.87 37.16 0.33 -2.60 15 2 C 0.04 0.90 2.64 -92.92 -0.25 0.65 15 3 H 0.06 1.40 8.14 -51.93 -0.42 0.98 15 4 C -0.51 -13.86 8.37 -34.44 -0.29 -14.15 15 5 H 0.08 2.19 6.75 -52.49 -0.35 1.84 15 6 C 0.06 1.64 5.30 -17.82 -0.09 1.55 15 7 N -0.90 -24.15 11.32 55.43 0.63 -23.53 15 8 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 15 9 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 15 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 12 C 0.51 11.23 7.11 -10.99 -0.08 11.16 15 13 O -0.47 -12.05 14.09 5.55 0.08 -11.98 15 14 N -0.64 -10.93 5.30 -13.07 -0.07 -11.00 15 15 C 0.30 5.02 8.02 -87.34 -0.70 4.32 15 16 N -0.48 -8.84 8.65 -15.08 -0.13 -8.97 15 17 C 0.10 1.48 11.31 -19.10 -0.22 1.26 15 18 C -0.23 -2.97 7.19 29.09 0.21 -2.76 15 19 Cl -0.01 -0.09 29.30 -51.86 -1.52 -1.61 15 20 S 0.14 1.69 23.22 -107.50 -2.50 -0.80 15 21 H 0.01 0.22 7.56 -51.93 -0.39 -0.17 15 22 H 0.03 0.77 8.14 -51.93 -0.42 0.35 15 23 H 0.10 2.34 6.07 -51.93 -0.32 2.03 15 24 H 0.26 6.82 8.31 -40.82 -0.34 6.48 15 25 H 0.42 5.57 8.24 -40.82 -0.34 5.24 15 26 H 0.18 2.20 8.06 -52.48 -0.42 1.78 15 LS Contribution 262.83 15.07 3.96 3.96 Total: -1.00 -30.65 262.83 -7.46 -38.11 By element: Atomic # 1 Polarization: 1.87 SS G_CDS: -1.80 Total: 0.07 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: -1.08 Total: -0.57 kcal Atomic # 7 Polarization: -43.92 SS G_CDS: 0.43 Total: -43.49 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: 0.08 Total: -11.98 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: 1.69 SS G_CDS: -2.50 Total: -0.80 kcal Atomic # 17 Polarization: -0.09 SS G_CDS: -1.52 Total: -1.61 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -30.65 -7.46 -38.11 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597297665.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.118 kcal (2) G-P(sol) polarization free energy of solvation -30.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds