Wall clock time and date at job start Mon Mar 30 2020 07:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46848 * 60.00326 * 8 6 4 10 10 H 1.48500 * 109.47035 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47237 * 300.00475 * 8 6 4 12 12 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 13 13 O 1.21290 * 119.99902 * 119.99996 * 12 2 1 14 14 N 1.34777 * 120.00075 * 300.00543 * 12 2 1 15 15 C 1.39047 * 120.00035 * 179.97438 * 14 12 2 16 16 N 1.29574 * 124.93129 * 359.69530 * 15 14 12 17 17 C 1.32062 * 116.92402 * 179.77117 * 16 15 14 18 18 C 1.33536 * 114.52791 * 0.51513 * 17 16 15 19 19 Cl 1.73599 * 125.97683 * 179.72631 * 18 17 16 20 20 S 1.70961 * 124.92912 * 179.97438 * 15 14 12 21 21 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 24 24 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 25 25 H 0.96996 * 119.99636 * 359.97438 * 14 12 2 26 26 H 1.08005 * 122.73636 * 180.26395 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.8258 -2.5200 -4.0078 10 1 1.8268 -0.4196 -5.2205 11 1 3.8063 -1.1207 -4.0083 12 6 2.0324 -0.7104 1.2304 13 8 2.7297 -1.6965 1.1190 14 7 1.7068 -0.2501 2.4545 15 6 2.1699 -0.9059 3.5898 16 7 2.9130 -1.9673 3.5822 17 6 3.2666 -2.4582 4.7561 18 6 2.7897 -1.7837 5.8054 19 17 3.0624 -2.1703 7.4757 20 16 1.8359 -0.4327 5.1983 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 0.7093 1.1619 -3.4844 25 1 1.1493 0.5387 2.5435 26 1 3.8872 -3.3360 4.8592 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597297665.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:23 Heat of formation + Delta-G solvation = -9.920687 kcal Electronic energy + Delta-G solvation = -14674.317659 eV Core-core repulsion = 11905.490717 eV Total energy + Delta-G solvation = -2768.826943 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 260.013 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.56148 -40.00452 -37.82396 -35.90061 -35.83137 -32.60980 -30.21420 -27.25332 -26.59559 -24.53276 -22.66892 -20.58064 -20.06856 -18.36926 -17.80650 -17.55647 -16.68837 -16.49060 -16.28139 -15.46185 -15.00497 -14.82573 -14.48299 -13.63892 -13.32561 -13.27828 -12.98929 -12.74609 -12.62045 -12.25638 -12.03416 -11.91654 -11.66339 -11.18436 -11.06812 -10.54883 -10.33048 -10.18386 -9.28328 -8.17406 -6.27618 -0.51794 -0.46114 0.31656 1.05383 1.42514 1.42991 1.50236 1.51776 1.99103 2.03266 2.44227 3.13045 3.39093 4.14802 4.21335 4.71191 4.73487 4.89096 4.96557 5.18039 5.45227 5.72332 5.83237 6.06378 6.24935 6.74474 6.81546 7.25371 7.42007 8.88079 Molecular weight = 260.01amu Principal moments of inertia in cm(-1) A = 0.056823 B = 0.004411 C = 0.004142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.638996 B = 6346.240175 C = 6758.062764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.034 3.966 3 H 0.055 0.945 4 C -0.533 4.533 5 H 0.048 0.952 6 C 0.025 3.975 7 N -0.907 5.907 8 Si 0.954 3.046 9 H -0.278 1.278 10 H -0.273 1.273 11 H -0.278 1.278 12 C 0.517 3.483 13 O -0.516 6.516 14 N -0.629 5.629 15 C 0.259 3.741 16 N -0.523 5.523 17 C 0.080 3.920 18 C -0.225 4.225 19 Cl 0.017 6.983 20 S 0.239 5.761 21 H 0.059 0.941 22 H 0.023 0.977 23 H 0.076 0.924 24 H 0.267 0.733 25 H 0.437 0.563 26 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.943 0.642 18.439 18.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.013 3.987 3 H 0.073 0.927 4 C -0.572 4.572 5 H 0.066 0.934 6 C -0.175 4.175 7 N -0.545 5.545 8 Si 0.779 3.221 9 H -0.203 1.203 10 H -0.198 1.198 11 H -0.203 1.203 12 C 0.304 3.696 13 O -0.387 6.387 14 N -0.282 5.282 15 C -0.108 4.108 16 N -0.246 5.246 17 C -0.074 4.074 18 C -0.374 4.374 19 Cl 0.045 6.955 20 S 0.488 5.512 21 H 0.077 0.923 22 H 0.042 0.958 23 H 0.095 0.905 24 H 0.076 0.924 25 H 0.279 0.721 26 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -0.954 0.647 18.183 18.220 hybrid contribution 0.745 -0.976 -0.789 1.460 sum -0.208 -0.329 17.394 17.398 Atomic orbital electron populations 1.21634 0.94427 0.99799 1.02419 1.18855 0.95683 0.96265 0.87942 0.92736 1.21214 1.32045 1.12946 0.90982 0.93373 1.25512 0.95090 0.95698 1.01205 1.69906 1.36812 1.23253 1.24559 0.85682 0.78628 0.78735 0.79016 1.20336 1.19817 1.20343 1.22218 0.78621 0.84337 0.84410 1.90647 1.35712 1.26310 1.85986 1.43584 1.51554 1.30921 1.02166 1.24157 0.98044 0.94687 0.93888 1.66790 1.17142 1.12083 1.28602 1.22003 1.00242 1.01517 0.83596 1.26687 1.13377 1.05137 0.92249 1.98357 1.95078 1.92832 1.09236 1.83551 1.48209 1.25688 0.93747 0.92258 0.95750 0.90534 0.92411 0.72137 0.78630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.30 8.87 71.98 0.64 -4.66 15 2 C 0.03 1.63 2.64 -12.29 -0.03 1.60 15 3 H 0.05 2.63 8.14 -2.39 -0.02 2.61 15 4 C -0.53 -30.05 8.37 25.60 0.21 -29.83 15 5 H 0.05 2.93 6.75 -2.91 -0.02 2.91 15 6 C 0.02 1.35 5.30 84.65 0.45 1.80 15 7 N -0.91 -49.03 11.32 21.45 0.24 -48.79 15 8 Si 0.95 44.20 29.54 68.60 2.03 46.22 15 9 H -0.28 -12.89 7.11 99.48 0.71 -12.19 15 10 H -0.27 -11.96 7.11 99.48 0.71 -11.26 15 11 H -0.28 -12.90 7.11 99.48 0.71 -12.19 15 12 C 0.52 23.19 7.11 87.66 0.62 23.82 15 13 O -0.52 -27.66 14.09 -3.06 -0.04 -27.70 15 14 N -0.63 -20.96 5.30 -313.64 -1.66 -22.62 15 15 C 0.26 8.30 8.02 179.20 1.44 9.73 15 16 N -0.52 -19.28 8.65 -201.63 -1.74 -21.02 15 17 C 0.08 2.25 11.31 83.59 0.95 3.19 15 18 C -0.23 -5.19 7.19 66.75 0.48 -4.71 15 19 Cl 0.02 0.31 29.30 -2.72 -0.08 0.23 15 20 S 0.24 5.10 23.22 -56.49 -1.31 3.79 15 21 H 0.06 1.91 7.56 -2.39 -0.02 1.90 15 22 H 0.02 1.04 8.14 -2.39 -0.02 1.02 15 23 H 0.08 3.62 6.07 -2.38 -0.01 3.60 15 24 H 0.27 13.71 8.31 -92.71 -0.77 12.94 15 25 H 0.44 10.77 8.24 -92.71 -0.76 10.00 15 26 H 0.20 4.60 8.06 -2.91 -0.02 4.58 15 Total: -1.00 -67.68 262.83 2.66 -65.02 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: 0.47 Total: 3.92 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: 4.75 Total: 0.94 kcal Atomic # 7 Polarization: -89.27 SS G_CDS: -3.16 Total: -92.43 kcal Atomic # 8 Polarization: -27.66 SS G_CDS: -0.04 Total: -27.70 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Atomic # 16 Polarization: 5.10 SS G_CDS: -1.31 Total: 3.79 kcal Atomic # 17 Polarization: 0.31 SS G_CDS: -0.08 Total: 0.23 kcal Total: -67.68 2.66 -65.02 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597297665.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.099 kcal (2) G-P(sol) polarization free energy of solvation -67.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds