Wall clock time and date at job start Mon Mar 30 2020 07:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50697 * 109.47239 * 120.00336 * 2 1 3 5 5 H 1.07994 * 120.00496 * 120.00058 * 4 2 1 6 6 C 1.37887 * 119.99690 * 299.99759 * 4 2 1 7 7 N 1.31507 * 120.00093 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99676 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47515 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46678 * 119.99923 * 8 6 4 11 11 H 1.48493 * 109.47346 * 239.99833 * 8 6 4 12 12 C 1.50699 * 109.46866 * 240.00048 * 2 1 3 13 13 O 1.21285 * 120.00039 * 239.99891 * 12 2 1 14 14 N 1.34780 * 120.00249 * 59.99816 * 12 2 1 15 15 C 1.39040 * 120.00029 * 179.97438 * 14 12 2 16 16 N 1.29575 * 124.93327 * 359.69978 * 15 14 12 17 17 C 1.32066 * 116.92390 * 179.84074 * 16 15 14 18 18 C 1.33542 * 114.52872 * 0.44131 * 17 16 15 19 19 Cl 1.73595 * 125.97574 * 179.78902 * 18 17 16 20 20 S 1.70965 * 124.92803 * 180.02562 * 15 14 12 21 21 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 22 22 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 23 23 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 24 24 H 0.96999 * 120.00118 * 179.97438 * 7 6 4 25 25 H 0.96998 * 119.99818 * 0.02562 * 14 12 2 26 26 H 1.07998 * 122.73483 * 180.23120 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9437 0.8302 2.6034 8 14 2.3226 -1.1196 4.0079 9 1 3.1485 -2.2857 3.6037 10 1 3.1474 -0.1858 4.8159 11 1 1.1680 -1.5867 4.8165 12 6 2.0323 -0.7104 -1.2305 13 8 2.7296 -1.6965 -1.1192 14 7 1.7067 -0.2500 -2.4546 15 6 2.1706 -0.9051 -3.5899 16 7 2.9236 -1.9596 -3.5824 17 6 3.2697 -2.4556 -4.7564 18 6 2.7924 -1.7814 -5.8056 19 17 3.0659 -2.1672 -7.4759 20 16 1.8366 -0.4318 -5.1984 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 0.7091 1.1614 3.4844 25 1 1.1493 0.5389 -2.5436 26 1 3.8910 -3.3329 -4.8595 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597297866.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:26 Heat of formation + Delta-G solvation = -10.055163 kcal Electronic energy + Delta-G solvation = -14674.590792 eV Core-core repulsion = 11905.758018 eV Total energy + Delta-G solvation = -2768.832774 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 260.013 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.56199 -40.00491 -37.82425 -35.90160 -35.83352 -32.61152 -30.21425 -27.25732 -26.59546 -24.53357 -22.66970 -20.58080 -20.06982 -18.37525 -17.80735 -17.55864 -16.69033 -16.49050 -16.28053 -15.46020 -15.00027 -14.82846 -14.49172 -13.64860 -13.32388 -13.28337 -12.99222 -12.73154 -12.61612 -12.25439 -12.06092 -11.91655 -11.66369 -11.18001 -11.05500 -10.55152 -10.33032 -10.18459 -9.28307 -8.17945 -6.27859 -0.51795 -0.46125 0.31646 1.05399 1.39395 1.42418 1.50204 1.55112 1.99097 2.03339 2.44176 3.12541 3.39075 4.14769 4.21312 4.71147 4.73477 4.89094 4.96583 5.18058 5.45280 5.72392 5.83244 6.06359 6.24805 6.74687 6.81759 7.25414 7.41937 8.87958 Molecular weight = 260.01amu Principal moments of inertia in cm(-1) A = 0.056814 B = 0.004411 C = 0.004142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.715145 B = 6346.208571 C = 6758.262711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.034 3.966 3 H 0.055 0.945 4 C -0.531 4.531 5 H 0.048 0.952 6 C 0.024 3.976 7 N -0.907 5.907 8 Si 0.954 3.046 9 H -0.282 1.282 10 H -0.274 1.274 11 H -0.274 1.274 12 C 0.517 3.483 13 O -0.516 6.516 14 N -0.629 5.629 15 C 0.260 3.740 16 N -0.523 5.523 17 C 0.080 3.920 18 C -0.225 4.225 19 Cl 0.017 6.983 20 S 0.239 5.761 21 H 0.076 0.924 22 H 0.059 0.941 23 H 0.024 0.976 24 H 0.266 0.734 25 H 0.437 0.563 26 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.977 0.647 -18.439 18.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.012 3.988 3 H 0.073 0.927 4 C -0.570 4.570 5 H 0.066 0.934 6 C -0.176 4.176 7 N -0.546 5.546 8 Si 0.780 3.220 9 H -0.207 1.207 10 H -0.200 1.200 11 H -0.199 1.199 12 C 0.304 3.696 13 O -0.387 6.387 14 N -0.282 5.282 15 C -0.108 4.108 16 N -0.246 5.246 17 C -0.074 4.074 18 C -0.374 4.374 19 Cl 0.045 6.955 20 S 0.488 5.512 21 H 0.095 0.905 22 H 0.077 0.923 23 H 0.043 0.957 24 H 0.076 0.924 25 H 0.279 0.721 26 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -0.971 0.653 -18.187 18.224 hybrid contribution 0.735 -0.964 0.796 1.451 sum -0.236 -0.311 -17.390 17.395 Atomic orbital electron populations 1.21632 0.94409 0.99814 1.02418 1.18866 0.95703 0.96276 0.87958 0.92720 1.21267 1.31882 1.12846 0.90963 0.93415 1.25517 0.95113 0.95700 1.01221 1.69920 1.36924 1.23296 1.24430 0.85569 0.78359 0.78573 0.79543 1.20718 1.19954 1.19896 1.22219 0.78618 0.84337 0.84412 1.90648 1.35706 1.26320 1.85984 1.43585 1.51535 1.30940 1.02165 1.24157 0.97879 0.94843 0.93889 1.66793 1.17001 1.12240 1.28600 1.22004 1.00306 1.01454 0.83597 1.26687 1.13454 1.05056 0.92247 1.98357 1.95062 1.92851 1.09230 1.83551 1.48147 1.25751 0.93746 0.90538 0.92260 0.95725 0.92432 0.72135 0.78638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.29 8.87 71.98 0.64 -4.65 15 2 C 0.03 1.61 2.64 -12.29 -0.03 1.57 15 3 H 0.06 2.63 8.14 -2.39 -0.02 2.61 15 4 C -0.53 -29.93 8.37 25.60 0.21 -29.71 15 5 H 0.05 2.92 6.75 -2.91 -0.02 2.90 15 6 C 0.02 1.32 5.30 84.66 0.45 1.77 15 7 N -0.91 -49.00 11.32 21.45 0.24 -48.76 15 8 Si 0.95 44.22 29.54 68.60 2.03 46.25 15 9 H -0.28 -13.52 7.11 99.48 0.71 -12.81 15 10 H -0.27 -12.23 7.11 99.48 0.71 -11.52 15 11 H -0.27 -12.18 7.11 99.48 0.71 -11.47 15 12 C 0.52 23.20 7.11 87.66 0.62 23.83 15 13 O -0.52 -27.71 14.09 -3.05 -0.04 -27.75 15 14 N -0.63 -20.96 5.30 -313.64 -1.66 -22.62 15 15 C 0.26 8.30 8.02 179.21 1.44 9.74 15 16 N -0.52 -19.30 8.65 -201.63 -1.74 -21.05 15 17 C 0.08 2.25 11.31 83.59 0.95 3.19 15 18 C -0.23 -5.19 7.19 66.75 0.48 -4.71 15 19 Cl 0.02 0.31 29.30 -2.72 -0.08 0.23 15 20 S 0.24 5.10 23.22 -56.49 -1.31 3.79 15 21 H 0.08 3.62 6.07 -2.39 -0.01 3.60 15 22 H 0.06 1.91 7.56 -2.39 -0.02 1.89 15 23 H 0.02 1.05 8.14 -2.39 -0.02 1.03 15 24 H 0.27 13.62 8.31 -92.71 -0.77 12.85 15 25 H 0.44 10.76 8.24 -92.71 -0.76 10.00 15 26 H 0.20 4.61 8.06 -2.91 -0.02 4.58 15 Total: -1.00 -67.87 262.83 2.66 -65.21 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: 0.47 Total: 3.67 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: 4.75 Total: 1.02 kcal Atomic # 7 Polarization: -89.27 SS G_CDS: -3.16 Total: -92.43 kcal Atomic # 8 Polarization: -27.71 SS G_CDS: -0.04 Total: -27.75 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Atomic # 16 Polarization: 5.10 SS G_CDS: -1.31 Total: 3.79 kcal Atomic # 17 Polarization: 0.31 SS G_CDS: -0.08 Total: 0.23 kcal Total: -67.87 2.66 -65.21 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597297866.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.160 kcal (2) G-P(sol) polarization free energy of solvation -67.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds