Wall clock time and date at job start Mon Mar 30 2020 06:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46785 * 2 1 4 4 C 1.52999 * 109.47040 * 120.00002 * 2 1 3 5 5 C 1.50700 * 109.46979 * 183.16486 * 4 2 1 6 6 H 1.07995 * 119.99950 * 4.99590 * 5 4 2 7 7 C 1.37881 * 120.00002 * 185.00352 * 5 4 2 8 8 N 1.31508 * 119.99696 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99885 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46784 * 60.00079 * 9 7 5 11 11 H 1.48503 * 109.46863 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47159 * 300.00064 * 9 7 5 13 13 N 1.46897 * 109.47156 * 240.00269 * 2 1 3 14 14 C 1.46908 * 111.00007 * 309.58542 * 13 2 1 15 15 C 1.50691 * 109.47083 * 199.55414 * 14 13 2 16 16 C 1.38233 * 120.00528 * 84.61992 * 15 14 13 17 17 C 1.38231 * 120.00375 * 179.72555 * 16 15 14 18 18 C 1.38233 * 119.99935 * 0.25452 * 17 16 15 19 19 C 1.38233 * 120.00096 * 359.97438 * 18 17 16 20 20 C 1.38229 * 120.00019 * 0.02562 * 19 18 17 21 21 C 1.46904 * 110.99798 * 73.53450 * 13 2 1 22 22 C 1.53002 * 117.49398 * 130.96185 * 21 13 2 23 23 C 1.52996 * 117.49673 * 62.34061 * 21 13 2 24 24 H 1.09007 * 109.46678 * 299.99602 * 1 2 3 25 25 H 1.09002 * 109.47425 * 59.99385 * 1 2 3 26 26 H 1.09000 * 109.47256 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47442 * 303.16789 * 4 2 1 28 28 H 1.09008 * 109.46908 * 63.16772 * 4 2 1 29 29 H 0.97007 * 119.99908 * 179.97438 * 8 7 5 30 30 H 1.09000 * 109.46845 * 79.54671 * 14 13 2 31 31 H 1.09002 * 109.46533 * 319.55576 * 14 13 2 32 32 H 1.08001 * 119.99503 * 0.02562 * 16 15 14 33 33 H 1.08005 * 119.99994 * 180.27932 * 17 16 15 34 34 H 1.08004 * 119.99962 * 180.02562 * 18 17 16 35 35 H 1.07999 * 120.00297 * 180.02562 * 19 18 17 36 36 H 1.08001 * 120.00319 * 180.02562 * 20 19 18 37 37 H 1.09000 * 115.54968 * 276.66404 * 21 13 2 38 38 H 1.08995 * 117.50131 * 359.97438 * 22 21 13 39 39 H 1.09006 * 117.49459 * 145.02402 * 22 21 13 40 40 H 1.08999 * 117.49539 * 214.97423 * 23 21 13 41 41 H 1.08997 * 117.49929 * 359.97438 * 23 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5449 -0.6537 1.2891 6 1 4.0795 -0.0791 0.5471 7 6 4.2394 -1.3255 2.2727 8 7 3.5884 -2.0248 3.1763 9 14 6.1049 -1.2423 2.3216 10 1 6.5333 0.1706 2.4812 11 1 6.6062 -2.0434 3.4671 12 1 6.6581 -1.7873 1.0559 13 7 2.0197 -0.6924 -1.1994 14 6 1.3712 -2.0016 -1.3532 15 6 2.1999 -2.8686 -2.2656 16 6 3.2604 -3.5936 -1.7552 17 6 4.0170 -4.3933 -2.5912 18 6 3.7164 -4.4639 -3.9386 19 6 2.6588 -3.7352 -4.4499 20 6 1.9022 -2.9355 -3.6139 21 6 1.8287 0.1337 -2.3990 22 6 3.0255 0.3051 -3.3366 23 6 2.5672 1.4722 -2.4599 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.6311 -0.2413 2.1383 28 1 1.7237 -1.7641 1.2213 29 1 4.0770 -2.4977 3.8682 30 1 0.3784 -1.8671 -1.7824 31 1 1.2835 -2.4803 -0.3778 32 1 3.4948 -3.5390 -0.7023 33 1 4.8428 -4.9633 -2.1915 34 1 4.3073 -5.0890 -4.5917 35 1 2.4237 -3.7906 -5.5025 36 1 1.0757 -2.3665 -4.0133 37 1 0.8379 0.0845 -2.8509 38 1 3.9547 -0.1948 -3.0632 39 1 2.8223 0.3686 -4.4057 40 1 2.0626 2.3035 -2.9522 41 1 3.1945 1.7400 -1.6097 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695802057.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:22 Heat of formation + Delta-G solvation = 50.210856 kcal Electronic energy + Delta-G solvation = -19951.799936 eV Core-core repulsion = 17218.185665 eV Total energy + Delta-G solvation = -2733.614270 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.24704 -37.87761 -34.96726 -32.77248 -31.69902 -30.46013 -28.99785 -27.25636 -25.12538 -23.21630 -22.19277 -21.94969 -21.03308 -20.63859 -18.39351 -16.63757 -16.08785 -15.78934 -15.05909 -14.86061 -14.48675 -14.28073 -13.93717 -13.20396 -12.98332 -12.58933 -12.45083 -12.21186 -12.08664 -11.88955 -11.67443 -11.14740 -11.12056 -11.04857 -10.66828 -10.61003 -10.45942 -10.44205 -10.11158 -9.92001 -9.66307 -9.11791 -8.98126 -8.49778 -8.32094 -8.20840 -7.47970 -5.87761 -3.84923 1.75788 1.83882 3.40965 3.44864 3.48958 4.11302 4.23759 4.56866 4.60989 5.21888 5.23082 5.32917 5.35824 5.40534 5.48741 5.52259 5.63580 5.75283 5.81388 5.89934 5.94026 6.00077 6.01907 6.07733 6.16031 6.21971 6.38351 6.45146 6.51608 6.55892 6.62605 6.68280 6.82246 6.94512 7.01312 7.17236 7.43634 7.54102 7.70239 7.92606 8.05400 8.13214 8.59047 9.19883 9.76230 11.24016 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.014486 B = 0.008428 C = 0.006651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.478018 B = 3321.498349 C = 4209.005797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.088 3.912 3 H 0.072 0.928 4 C 0.030 3.970 5 C -0.485 4.485 6 H 0.057 0.943 7 C 0.053 3.947 8 N -0.904 5.904 9 Si 0.885 3.115 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.277 1.277 13 N -0.475 5.475 14 C 0.097 3.903 15 C -0.059 4.059 16 C -0.086 4.086 17 C -0.126 4.126 18 C -0.130 4.130 19 C -0.131 4.131 20 C -0.112 4.112 21 C 0.013 3.987 22 C -0.162 4.162 23 C -0.176 4.176 24 H 0.055 0.945 25 H 0.039 0.961 26 H 0.051 0.949 27 H 0.015 0.985 28 H 0.022 0.978 29 H 0.257 0.743 30 H 0.032 0.968 31 H 0.093 0.907 32 H 0.132 0.868 33 H 0.116 0.884 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.110 0.890 37 H 0.073 0.927 38 H 0.097 0.903 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.139 -0.412 -13.309 13.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.020 4.020 3 H 0.090 0.910 4 C -0.007 4.007 5 C -0.524 4.524 6 H 0.076 0.924 7 C -0.147 4.147 8 N -0.545 5.545 9 Si 0.714 3.286 10 H -0.206 1.206 11 H -0.217 1.217 12 H -0.203 1.203 13 N -0.198 5.198 14 C -0.030 4.030 15 C -0.060 4.060 16 C -0.105 4.105 17 C -0.144 4.144 18 C -0.149 4.149 19 C -0.149 4.149 20 C -0.131 4.131 21 C -0.096 4.096 22 C -0.200 4.200 23 C -0.214 4.214 24 H 0.074 0.926 25 H 0.058 0.942 26 H 0.070 0.930 27 H 0.034 0.966 28 H 0.040 0.960 29 H 0.067 0.933 30 H 0.050 0.950 31 H 0.111 0.889 32 H 0.150 0.850 33 H 0.134 0.866 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.128 0.872 37 H 0.091 0.909 38 H 0.116 0.884 39 H 0.101 0.899 40 H 0.103 0.897 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.609 -0.587 -13.070 13.572 hybrid contribution 0.256 0.130 -0.058 0.292 sum -3.353 -0.458 -13.128 13.557 Atomic orbital electron populations 1.22546 0.99647 1.01218 1.00663 1.21966 0.90086 0.98460 0.91441 0.91023 1.19209 0.96392 0.95423 0.89685 1.21068 0.91437 1.29086 1.10792 0.92428 1.24957 0.97743 0.95959 0.96011 1.69947 1.35122 1.33143 1.16239 0.86765 0.86753 0.77841 0.77255 1.20587 1.21703 1.20315 1.61884 1.56758 1.00891 1.00221 1.21038 0.92869 0.89974 0.99152 1.19854 0.96306 0.96204 0.93629 1.21258 0.93748 0.94511 1.00932 1.21145 0.99883 0.99660 0.93738 1.21008 0.98053 1.00357 0.95457 1.20947 0.96643 0.98328 0.99009 1.20933 0.99879 0.98997 0.93280 1.22357 0.94194 0.97531 0.95511 1.22938 0.99785 1.01895 0.95382 1.22979 1.04234 0.91122 1.03025 0.92626 0.94230 0.92966 0.96640 0.96002 0.93311 0.95021 0.88904 0.85017 0.86630 0.87015 0.87032 0.87185 0.90913 0.88410 0.89944 0.89672 0.88071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.07 8.50 37.16 0.32 -2.75 16 2 C 0.09 1.74 2.21 -67.71 -0.15 1.59 16 3 H 0.07 1.46 6.92 -51.93 -0.36 1.10 16 4 C 0.03 0.74 4.42 -27.88 -0.12 0.62 16 5 C -0.49 -13.27 8.79 -34.44 -0.30 -13.57 16 6 H 0.06 1.59 7.75 -52.49 -0.41 1.18 16 7 C 0.05 1.49 5.46 -17.82 -0.10 1.39 16 8 N -0.90 -26.73 13.29 55.43 0.74 -25.99 16 9 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 13 N -0.47 -8.83 4.15 -220.14 -0.91 -9.75 16 14 C 0.10 1.71 3.65 -4.98 -0.02 1.69 16 15 C -0.06 -1.00 5.14 -104.63 -0.54 -1.54 16 16 C -0.09 -1.54 9.72 -39.59 -0.38 -1.93 16 17 C -0.13 -1.97 10.05 -39.59 -0.40 -2.37 16 18 C -0.13 -1.80 10.05 -39.58 -0.40 -2.20 16 19 C -0.13 -1.77 10.05 -39.59 -0.40 -2.17 16 20 C -0.11 -1.65 9.41 -39.58 -0.37 -2.02 16 21 C 0.01 0.21 3.87 -67.71 -0.26 -0.05 16 22 C -0.16 -2.44 10.46 -26.73 -0.28 -2.72 16 23 C -0.18 -2.63 9.65 -26.73 -0.26 -2.89 16 24 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 25 H 0.04 0.60 7.55 -51.93 -0.39 0.20 16 26 H 0.05 0.87 6.65 -51.93 -0.35 0.52 16 27 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.02 0.57 6.32 -51.92 -0.33 0.24 16 29 H 0.26 7.31 8.31 -40.82 -0.34 6.98 16 30 H 0.03 0.51 7.12 -51.93 -0.37 0.14 16 31 H 0.09 1.83 5.89 -51.93 -0.31 1.53 16 32 H 0.13 2.67 8.06 -52.49 -0.42 2.25 16 33 H 0.12 1.63 8.06 -52.48 -0.42 1.20 16 34 H 0.11 1.26 8.06 -52.48 -0.42 0.84 16 35 H 0.11 1.22 8.06 -52.49 -0.42 0.80 16 36 H 0.11 1.45 8.06 -52.49 -0.42 1.02 16 37 H 0.07 1.08 7.85 -51.93 -0.41 0.68 16 38 H 0.10 1.68 8.14 -51.93 -0.42 1.26 16 39 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.10 1.70 7.69 -51.93 -0.40 1.30 16 LS Contribution 332.74 15.07 5.01 5.01 Total: -1.00 -28.87 332.74 -10.52 -39.39 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -6.68 Total: 3.34 kcal Atomic # 6 Polarization: -25.26 SS G_CDS: -3.66 Total: -28.93 kcal Atomic # 7 Polarization: -35.56 SS G_CDS: -0.18 Total: -35.74 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.87 -10.52 -39.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695802057.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.602 kcal (2) G-P(sol) polarization free energy of solvation -28.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds