Wall clock time and date at job start Mon Mar 30 2020 06:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46785 * 2 1 4 4 C 1.52999 * 109.47040 * 120.00002 * 2 1 3 5 5 C 1.50700 * 109.46979 * 183.16486 * 4 2 1 6 6 H 1.07995 * 119.99950 * 4.99590 * 5 4 2 7 7 C 1.37881 * 120.00002 * 185.00352 * 5 4 2 8 8 N 1.31508 * 119.99696 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99885 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46784 * 60.00079 * 9 7 5 11 11 H 1.48503 * 109.46863 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47159 * 300.00064 * 9 7 5 13 13 N 1.46897 * 109.47156 * 240.00269 * 2 1 3 14 14 C 1.46908 * 111.00007 * 309.58542 * 13 2 1 15 15 C 1.50691 * 109.47083 * 199.55414 * 14 13 2 16 16 C 1.38233 * 120.00528 * 84.61992 * 15 14 13 17 17 C 1.38231 * 120.00375 * 179.72555 * 16 15 14 18 18 C 1.38233 * 119.99935 * 0.25452 * 17 16 15 19 19 C 1.38233 * 120.00096 * 359.97438 * 18 17 16 20 20 C 1.38229 * 120.00019 * 0.02562 * 19 18 17 21 21 C 1.46904 * 110.99798 * 73.53450 * 13 2 1 22 22 C 1.53002 * 117.49398 * 130.96185 * 21 13 2 23 23 C 1.52996 * 117.49673 * 62.34061 * 21 13 2 24 24 H 1.09007 * 109.46678 * 299.99602 * 1 2 3 25 25 H 1.09002 * 109.47425 * 59.99385 * 1 2 3 26 26 H 1.09000 * 109.47256 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47442 * 303.16789 * 4 2 1 28 28 H 1.09008 * 109.46908 * 63.16772 * 4 2 1 29 29 H 0.97007 * 119.99908 * 179.97438 * 8 7 5 30 30 H 1.09000 * 109.46845 * 79.54671 * 14 13 2 31 31 H 1.09002 * 109.46533 * 319.55576 * 14 13 2 32 32 H 1.08001 * 119.99503 * 0.02562 * 16 15 14 33 33 H 1.08005 * 119.99994 * 180.27932 * 17 16 15 34 34 H 1.08004 * 119.99962 * 180.02562 * 18 17 16 35 35 H 1.07999 * 120.00297 * 180.02562 * 19 18 17 36 36 H 1.08001 * 120.00319 * 180.02562 * 20 19 18 37 37 H 1.09000 * 115.54968 * 276.66404 * 21 13 2 38 38 H 1.08995 * 117.50131 * 359.97438 * 22 21 13 39 39 H 1.09006 * 117.49459 * 145.02402 * 22 21 13 40 40 H 1.08999 * 117.49539 * 214.97423 * 23 21 13 41 41 H 1.08997 * 117.49929 * 359.97438 * 23 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5449 -0.6537 1.2891 6 1 4.0795 -0.0791 0.5471 7 6 4.2394 -1.3255 2.2727 8 7 3.5884 -2.0248 3.1763 9 14 6.1049 -1.2423 2.3216 10 1 6.5333 0.1706 2.4812 11 1 6.6062 -2.0434 3.4671 12 1 6.6581 -1.7873 1.0559 13 7 2.0197 -0.6924 -1.1994 14 6 1.3712 -2.0016 -1.3532 15 6 2.1999 -2.8686 -2.2656 16 6 3.2604 -3.5936 -1.7552 17 6 4.0170 -4.3933 -2.5912 18 6 3.7164 -4.4639 -3.9386 19 6 2.6588 -3.7352 -4.4499 20 6 1.9022 -2.9355 -3.6139 21 6 1.8287 0.1337 -2.3990 22 6 3.0255 0.3051 -3.3366 23 6 2.5672 1.4722 -2.4599 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.6311 -0.2413 2.1383 28 1 1.7237 -1.7641 1.2213 29 1 4.0770 -2.4977 3.8682 30 1 0.3784 -1.8671 -1.7824 31 1 1.2835 -2.4803 -0.3778 32 1 3.4948 -3.5390 -0.7023 33 1 4.8428 -4.9633 -2.1915 34 1 4.3073 -5.0890 -4.5917 35 1 2.4237 -3.7906 -5.5025 36 1 1.0757 -2.3665 -4.0133 37 1 0.8379 0.0845 -2.8509 38 1 3.9547 -0.1948 -3.0632 39 1 2.8223 0.3686 -4.4057 40 1 2.0626 2.3035 -2.9522 41 1 3.1945 1.7400 -1.6097 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695802057.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:21 Heat of formation + Delta-G solvation = 35.566678 kcal Electronic energy + Delta-G solvation = -19952.434955 eV Core-core repulsion = 17218.185665 eV Total energy + Delta-G solvation = -2734.249290 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.54703 -39.16789 -36.41087 -34.70207 -33.21381 -31.64220 -30.52358 -29.05900 -26.46824 -25.16432 -23.42657 -23.14980 -22.28231 -22.07930 -19.88943 -18.38279 -17.77657 -17.04423 -16.57665 -16.35620 -16.07218 -15.54105 -15.33597 -14.73378 -14.17106 -14.10502 -13.93570 -13.78786 -13.51176 -13.39527 -13.19349 -13.00217 -12.54509 -12.47337 -12.40707 -12.28607 -12.02478 -11.76495 -11.68840 -11.23824 -11.09240 -11.08310 -10.75963 -10.46882 -9.68651 -9.50167 -8.87166 -8.09363 -6.12448 0.57411 0.63854 1.38123 1.40265 1.47571 2.45755 2.85696 3.02598 3.22653 3.34196 3.97660 4.04882 4.15805 4.21086 4.26201 4.27067 4.37299 4.39156 4.43333 4.55558 4.66924 4.71983 4.79507 4.85872 4.87614 4.92567 5.06370 5.16307 5.19714 5.24241 5.29013 5.31842 5.43713 5.49693 5.67753 5.72146 5.73721 5.90152 5.92766 6.24528 6.33719 6.50353 6.61021 6.99730 7.52163 9.02329 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.014486 B = 0.008428 C = 0.006651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.478018 B = 3321.498349 C = 4209.005797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.098 3.902 3 H 0.065 0.935 4 C 0.037 3.963 5 C -0.489 4.489 6 H 0.051 0.949 7 C 0.000 4.000 8 N -0.937 5.937 9 Si 0.946 3.054 10 H -0.271 1.271 11 H -0.287 1.287 12 H -0.275 1.275 13 N -0.497 5.497 14 C 0.105 3.895 15 C -0.073 4.073 16 C -0.118 4.118 17 C -0.137 4.137 18 C -0.126 4.126 19 C -0.122 4.122 20 C -0.109 4.109 21 C 0.006 3.994 22 C -0.152 4.152 23 C -0.172 4.172 24 H 0.055 0.945 25 H 0.067 0.933 26 H 0.050 0.950 27 H -0.010 1.010 28 H -0.003 1.003 29 H 0.257 0.743 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.087 0.913 33 H 0.122 0.878 34 H 0.144 0.856 35 H 0.150 0.850 36 H 0.133 0.867 37 H 0.097 0.903 38 H 0.069 0.931 39 H 0.113 0.887 40 H 0.116 0.884 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.422 0.130 -16.884 17.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.010 4.010 3 H 0.083 0.917 4 C 0.000 4.000 5 C -0.528 4.528 6 H 0.069 0.931 7 C -0.196 4.196 8 N -0.580 5.580 9 Si 0.772 3.228 10 H -0.196 1.196 11 H -0.213 1.213 12 H -0.201 1.201 13 N -0.220 5.220 14 C -0.022 4.022 15 C -0.074 4.074 16 C -0.137 4.137 17 C -0.155 4.155 18 C -0.144 4.144 19 C -0.140 4.140 20 C -0.127 4.127 21 C -0.103 4.103 22 C -0.190 4.190 23 C -0.209 4.209 24 H 0.074 0.926 25 H 0.085 0.915 26 H 0.069 0.931 27 H 0.008 0.992 28 H 0.016 0.984 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.106 0.894 33 H 0.140 0.860 34 H 0.162 0.838 35 H 0.167 0.833 36 H 0.151 0.849 37 H 0.114 0.886 38 H 0.087 0.913 39 H 0.132 0.868 40 H 0.134 0.866 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.890 -0.036 -16.653 17.101 hybrid contribution 0.354 -0.069 1.016 1.078 sum -3.536 -0.105 -15.638 16.033 Atomic orbital electron populations 1.22405 0.97024 1.01559 1.02019 1.21619 0.92120 0.97129 0.90131 0.91657 1.19057 0.95122 0.94367 0.91499 1.21331 0.92946 1.28338 1.10157 0.93077 1.25719 1.02178 0.95816 0.95850 1.70072 1.36754 1.34174 1.16984 0.85789 0.81568 0.78161 0.77233 1.19632 1.21256 1.20068 1.61716 1.57659 1.01637 1.00963 1.20894 0.94118 0.89488 0.97728 1.19829 0.96210 0.96464 0.94902 1.21062 0.96017 0.97320 0.99323 1.21293 0.99907 0.99449 0.94817 1.21374 0.98247 1.00170 0.94583 1.21395 0.95378 0.96560 1.00633 1.21142 1.00497 0.99151 0.91940 1.22454 0.95582 0.97667 0.94588 1.22907 0.98040 1.01221 0.96856 1.23003 1.03746 0.91802 1.02352 0.92593 0.91453 0.93122 0.99214 0.98432 0.93390 0.92891 0.92613 0.89448 0.85992 0.83807 0.83267 0.84887 0.88600 0.91271 0.86834 0.86572 0.90721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.67 8.50 71.98 0.61 -5.06 16 2 C 0.10 3.97 2.21 44.92 0.10 4.07 16 3 H 0.07 2.71 6.92 -2.39 -0.02 2.70 16 4 C 0.04 1.92 4.42 29.85 0.13 2.05 16 5 C -0.49 -28.05 8.79 25.60 0.22 -27.82 16 6 H 0.05 2.94 7.75 -2.91 -0.02 2.92 16 7 C 0.00 0.02 5.46 84.66 0.46 0.49 16 8 N -0.94 -58.02 13.29 21.45 0.28 -57.73 16 9 Si 0.95 46.46 29.54 68.60 2.03 48.49 16 10 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 11 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 12 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 13 N -0.50 -18.61 4.15 -850.40 -3.53 -22.14 16 14 C 0.10 3.76 3.65 85.55 0.31 4.07 16 15 C -0.07 -2.49 5.14 -19.87 -0.10 -2.59 16 16 C -0.12 -4.47 9.72 22.27 0.22 -4.26 16 17 C -0.14 -4.26 10.05 22.27 0.22 -4.04 16 18 C -0.13 -3.10 10.05 22.27 0.22 -2.88 16 19 C -0.12 -2.79 10.05 22.27 0.22 -2.56 16 20 C -0.11 -2.88 9.41 22.27 0.21 -2.67 16 21 C 0.01 0.17 3.87 44.91 0.17 0.34 16 22 C -0.15 -4.20 10.46 30.60 0.32 -3.88 16 23 C -0.17 -4.76 9.65 30.59 0.30 -4.47 16 24 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 25 H 0.07 1.86 7.55 -2.39 -0.02 1.84 16 26 H 0.05 1.68 6.65 -2.39 -0.02 1.66 16 27 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 28 H 0.00 -0.15 6.32 -2.38 -0.02 -0.16 16 29 H 0.26 15.21 8.31 -92.70 -0.77 14.44 16 30 H 0.05 1.62 7.12 -2.39 -0.02 1.61 16 31 H 0.06 2.38 5.89 -2.39 -0.01 2.36 16 32 H 0.09 3.97 8.06 -2.91 -0.02 3.95 16 33 H 0.12 3.48 8.06 -2.91 -0.02 3.46 16 34 H 0.14 2.63 8.06 -2.91 -0.02 2.60 16 35 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 36 H 0.13 2.90 8.06 -2.91 -0.02 2.87 16 37 H 0.10 2.44 7.85 -2.39 -0.02 2.42 16 38 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 39 H 0.11 2.44 8.14 -2.38 -0.02 2.42 16 40 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 41 H 0.07 2.48 7.69 -2.39 -0.02 2.47 16 Total: -1.00 -65.96 332.74 3.39 -62.57 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: 0.98 Total: 18.02 kcal Atomic # 6 Polarization: -52.84 SS G_CDS: 3.63 Total: -49.21 kcal Atomic # 7 Polarization: -76.63 SS G_CDS: -3.24 Total: -79.87 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.49 kcal Total: -65.96 3.39 -62.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695802057.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.136 kcal (2) G-P(sol) polarization free energy of solvation -65.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds