Wall clock time and date at job start Mon Mar 30 2020 06:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 C 1.53004 * 109.47083 * 120.00077 * 2 1 3 5 5 C 1.50702 * 109.47006 * 184.99905 * 4 2 1 6 6 H 1.07997 * 119.99830 * 0.02562 * 5 4 2 7 7 C 1.37880 * 120.00036 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99914 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99835 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47065 * 60.00515 * 9 7 5 11 11 H 1.48500 * 109.46979 * 179.97438 * 9 7 5 12 12 H 1.48489 * 109.47380 * 300.00237 * 9 7 5 13 13 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 14 14 C 1.39678 * 119.99747 * 84.71969 * 13 2 1 15 15 C 1.38939 * 120.19637 * 0.28169 * 14 13 2 16 16 C 1.37785 * 119.69789 * 180.11444 * 15 14 13 17 17 C 1.38987 * 120.65138 * 0.03727 * 16 15 14 18 18 C 1.37741 * 119.78971 * 359.67632 * 17 16 15 19 19 C 1.38602 * 120.19385 * 179.97438 * 14 13 2 20 20 C 1.50648 * 122.54863 * 180.76135 * 18 17 16 21 21 C 1.52730 * 110.58321 * 341.88518 * 20 18 17 22 22 C 1.53324 * 108.38254 * 51.21091 * 21 20 18 23 23 C 1.50651 * 117.68456 * 179.30674 * 17 16 15 24 24 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 26 26 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 27 27 H 1.08993 * 109.47108 * 304.99684 * 4 2 1 28 28 H 1.08998 * 109.47048 * 65.00196 * 4 2 1 29 29 H 0.96995 * 119.99815 * 179.97438 * 8 7 5 30 30 H 0.97001 * 120.00384 * 265.00562 * 13 2 1 31 31 H 1.08002 * 120.15077 * 0.09224 * 15 14 13 32 32 H 1.07998 * 119.67967 * 180.02562 * 16 15 14 33 33 H 1.07999 * 119.75837 * 359.97438 * 19 14 13 34 34 H 1.08999 * 109.25341 * 102.17003 * 20 18 17 35 35 H 1.08998 * 109.25375 * 221.60639 * 20 18 17 36 36 H 1.09002 * 109.67734 * 170.93064 * 21 20 18 37 37 H 1.08993 * 109.68332 * 291.48670 * 21 20 18 38 38 H 1.09000 * 109.67538 * 49.89236 * 22 21 20 39 39 H 1.09005 * 109.67592 * 170.43053 * 22 21 20 40 40 H 1.08995 * 109.25427 * 282.64753 * 23 17 16 41 41 H 1.09002 * 109.24918 * 42.06868 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5419 -0.6150 1.3127 6 1 4.0789 -0.0855 0.5396 7 6 4.2305 -1.1936 2.3578 8 7 3.5765 -1.8379 3.2995 9 14 6.0922 -1.0624 2.4360 10 1 6.4855 0.3684 2.4958 11 1 6.5872 -1.7623 3.6485 12 1 6.6838 -1.6882 1.2263 13 7 2.0184 -0.6906 -1.1962 14 6 2.1462 0.0048 -2.4007 15 6 1.8169 1.3530 -2.4677 16 6 1.9447 2.0284 -3.6618 17 6 2.3991 1.3742 -4.8008 18 6 2.7320 0.0392 -4.7363 19 6 2.6083 -0.6443 -3.5348 20 6 3.2465 -0.7263 -5.9274 21 6 2.9197 0.0134 -7.2230 22 6 3.3967 1.4640 -7.0851 23 6 2.4981 2.1731 -6.0742 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.6054 -0.2618 2.1369 28 1 1.7517 -1.7715 1.2056 29 1 4.0609 -2.2452 4.0344 30 1 2.2490 -1.6318 -1.1527 31 1 1.4621 1.8691 -1.5878 32 1 1.6891 3.0764 -3.7134 33 1 2.8701 -1.6909 -3.4841 34 1 4.3270 -0.8410 -5.8416 35 1 2.7816 -1.7120 -5.9493 36 1 3.4330 -0.4641 -8.0577 37 1 1.8435 -0.0045 -7.3946 38 1 4.4283 1.4792 -6.7333 39 1 3.3302 1.9655 -8.0506 40 1 1.5025 2.2938 -6.5011 41 1 2.9141 3.1555 -5.8507 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695835013.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:01 Heat of formation + Delta-G solvation = -9.914143 kcal Electronic energy + Delta-G solvation = -19037.885082 eV Core-core repulsion = 16301.663596 eV Total energy + Delta-G solvation = -2736.221486 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.73320 -37.28448 -34.99487 -32.80359 -32.23269 -30.74978 -29.07535 -27.41477 -27.14205 -23.45811 -23.20366 -22.19950 -21.76934 -20.02127 -18.71955 -16.65011 -16.27287 -15.85332 -15.23189 -14.61469 -14.41647 -14.27459 -13.78809 -13.43625 -13.26148 -12.94739 -12.86000 -12.45273 -12.31461 -11.96483 -11.79187 -11.54330 -11.40387 -11.26667 -11.06760 -10.88278 -10.75187 -10.63262 -10.36871 -10.30755 -10.01542 -9.47580 -9.33581 -9.00233 -8.42656 -8.28806 -6.67568 -6.05476 -4.07621 1.84086 2.07294 3.31159 3.35443 3.39060 4.16809 4.26581 4.42733 4.81009 4.84538 4.91018 5.27621 5.31286 5.33545 5.40928 5.60681 5.61957 5.67041 5.72943 5.80343 5.86846 5.93344 5.99137 6.01638 6.06010 6.08018 6.18477 6.29500 6.34426 6.43461 6.49027 6.65132 6.79687 6.87797 6.90620 7.11581 7.34625 7.51666 7.57309 7.91968 8.12924 8.34095 8.49649 8.98625 9.57106 11.05502 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.023758 B = 0.004722 C = 0.004292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.266721 B = 5928.174479 C = 6522.005632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.147 3.853 3 H 0.067 0.933 4 C 0.016 3.984 5 C -0.516 4.516 6 H 0.057 0.943 7 C 0.058 3.942 8 N -0.896 5.896 9 Si 0.891 3.109 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 N -0.717 5.717 14 C 0.237 3.763 15 C -0.203 4.203 16 C -0.072 4.072 17 C -0.159 4.159 18 C -0.028 4.028 19 C -0.214 4.214 20 C -0.080 4.080 21 C -0.117 4.117 22 C -0.119 4.119 23 C -0.066 4.066 24 H 0.051 0.949 25 H 0.057 0.943 26 H 0.044 0.956 27 H 0.030 0.970 28 H 0.020 0.980 29 H 0.261 0.739 30 H 0.399 0.601 31 H 0.120 0.880 32 H 0.111 0.889 33 H 0.113 0.887 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.062 0.938 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.521 4.842 -17.615 18.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.042 3.958 3 H 0.085 0.915 4 C -0.021 4.021 5 C -0.555 4.555 6 H 0.075 0.925 7 C -0.143 4.143 8 N -0.535 5.535 9 Si 0.719 3.281 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.203 1.203 13 N -0.341 5.341 14 C 0.129 3.871 15 C -0.225 4.225 16 C -0.091 4.091 17 C -0.161 4.161 18 C -0.029 4.029 19 C -0.238 4.238 20 C -0.117 4.117 21 C -0.154 4.154 22 C -0.156 4.156 23 C -0.103 4.103 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.063 0.937 27 H 0.048 0.952 28 H 0.039 0.961 29 H 0.071 0.929 30 H 0.234 0.766 31 H 0.138 0.862 32 H 0.129 0.871 33 H 0.131 0.869 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.571 4.842 -17.221 18.242 hybrid contribution 1.152 -0.370 0.390 1.271 sum -2.419 4.472 -16.831 17.582 Atomic orbital electron populations 1.22293 0.97806 1.01474 1.00710 1.21187 0.91159 0.97126 0.86302 0.91539 1.19380 0.96288 0.95715 0.90722 1.21149 0.91798 1.34405 1.08112 0.92523 1.24999 0.98354 0.95291 0.95669 1.69945 1.35639 1.35871 1.12078 0.86664 0.85807 0.78276 0.77312 1.20256 1.21328 1.20297 1.44981 1.70313 1.12459 1.06389 1.17854 0.91416 0.91441 0.86381 1.20620 1.09875 0.93492 0.98540 1.20789 0.97559 0.98665 0.92054 1.19126 1.08082 0.93724 0.95205 1.19169 0.96976 0.92888 0.93823 1.20478 1.11038 1.00077 0.92191 1.20449 1.00838 0.98165 0.92245 1.21516 1.01274 0.95749 0.96905 1.21526 0.99761 0.95741 0.98597 1.20242 0.99353 0.97706 0.92982 0.93013 0.92354 0.93661 0.95182 0.96147 0.92916 0.76622 0.86219 0.87100 0.86898 0.90975 0.91186 0.92018 0.91822 0.91824 0.92135 0.91945 0.91853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 9.43 37.16 0.35 -2.45 16 2 C 0.15 2.93 2.22 -67.93 -0.15 2.78 16 3 H 0.07 1.37 6.50 -51.93 -0.34 1.03 16 4 C 0.02 0.40 4.52 -27.88 -0.13 0.27 16 5 C -0.52 -14.12 8.84 -34.44 -0.30 -14.43 16 6 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 7 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 8 N -0.90 -26.34 13.29 55.43 0.74 -25.61 16 9 Si 0.89 21.69 29.54 -169.99 -5.02 16.66 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 N -0.72 -13.60 4.96 -52.24 -0.26 -13.86 16 14 C 0.24 4.21 6.63 -83.89 -0.56 3.66 16 15 C -0.20 -3.41 8.84 -39.49 -0.35 -3.76 16 16 C -0.07 -1.07 9.60 -39.47 -0.38 -1.45 16 17 C -0.16 -2.27 5.74 -104.55 -0.60 -2.87 16 18 C -0.03 -0.41 5.74 -104.63 -0.60 -1.01 16 19 C -0.21 -3.51 9.46 -39.25 -0.37 -3.88 16 20 C -0.08 -0.94 5.67 -28.05 -0.16 -1.09 16 21 C -0.12 -1.16 5.98 -26.70 -0.16 -1.31 16 22 C -0.12 -1.18 5.98 -26.71 -0.16 -1.34 16 23 C -0.07 -0.74 5.67 -28.05 -0.16 -0.90 16 24 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.04 0.71 7.72 -51.93 -0.40 0.31 16 27 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 30 H 0.40 7.60 8.62 -40.82 -0.35 7.25 16 31 H 0.12 1.99 6.16 -52.49 -0.32 1.66 16 32 H 0.11 1.40 8.05 -52.49 -0.42 0.98 16 33 H 0.11 1.73 8.05 -52.49 -0.42 1.31 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.07 0.77 8.12 -51.93 -0.42 0.34 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 38 H 0.06 0.66 8.10 -51.93 -0.42 0.24 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.66 8.12 -51.93 -0.42 0.24 16 LS Contribution 327.59 15.07 4.94 4.94 Total: -1.00 -28.96 327.59 -10.29 -39.25 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -6.87 Total: 4.85 kcal Atomic # 6 Polarization: -22.42 SS G_CDS: -3.82 Total: -26.24 kcal Atomic # 7 Polarization: -39.94 SS G_CDS: 0.48 Total: -39.47 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.96 -10.29 -39.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695835013.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.336 kcal (2) G-P(sol) polarization free energy of solvation -28.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds