Wall clock time and date at job start Mon Mar 30 2020 06:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 C 1.53004 * 109.47083 * 120.00077 * 2 1 3 5 5 C 1.50702 * 109.47006 * 184.99905 * 4 2 1 6 6 H 1.07997 * 119.99830 * 0.02562 * 5 4 2 7 7 C 1.37880 * 120.00036 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99914 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99835 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47065 * 60.00515 * 9 7 5 11 11 H 1.48500 * 109.46979 * 179.97438 * 9 7 5 12 12 H 1.48489 * 109.47380 * 300.00237 * 9 7 5 13 13 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 14 14 C 1.39678 * 119.99747 * 84.71969 * 13 2 1 15 15 C 1.38939 * 120.19637 * 0.28169 * 14 13 2 16 16 C 1.37785 * 119.69789 * 180.11444 * 15 14 13 17 17 C 1.38987 * 120.65138 * 0.03727 * 16 15 14 18 18 C 1.37741 * 119.78971 * 359.67632 * 17 16 15 19 19 C 1.38602 * 120.19385 * 179.97438 * 14 13 2 20 20 C 1.50648 * 122.54863 * 180.76135 * 18 17 16 21 21 C 1.52730 * 110.58321 * 341.88518 * 20 18 17 22 22 C 1.53324 * 108.38254 * 51.21091 * 21 20 18 23 23 C 1.50651 * 117.68456 * 179.30674 * 17 16 15 24 24 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 26 26 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 27 27 H 1.08993 * 109.47108 * 304.99684 * 4 2 1 28 28 H 1.08998 * 109.47048 * 65.00196 * 4 2 1 29 29 H 0.96995 * 119.99815 * 179.97438 * 8 7 5 30 30 H 0.97001 * 120.00384 * 265.00562 * 13 2 1 31 31 H 1.08002 * 120.15077 * 0.09224 * 15 14 13 32 32 H 1.07998 * 119.67967 * 180.02562 * 16 15 14 33 33 H 1.07999 * 119.75837 * 359.97438 * 19 14 13 34 34 H 1.08999 * 109.25341 * 102.17003 * 20 18 17 35 35 H 1.08998 * 109.25375 * 221.60639 * 20 18 17 36 36 H 1.09002 * 109.67734 * 170.93064 * 21 20 18 37 37 H 1.08993 * 109.68332 * 291.48670 * 21 20 18 38 38 H 1.09000 * 109.67538 * 49.89236 * 22 21 20 39 39 H 1.09005 * 109.67592 * 170.43053 * 22 21 20 40 40 H 1.08995 * 109.25427 * 282.64753 * 23 17 16 41 41 H 1.09002 * 109.24918 * 42.06868 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5419 -0.6150 1.3127 6 1 4.0789 -0.0855 0.5396 7 6 4.2305 -1.1936 2.3578 8 7 3.5765 -1.8379 3.2995 9 14 6.0922 -1.0624 2.4360 10 1 6.4855 0.3684 2.4958 11 1 6.5872 -1.7623 3.6485 12 1 6.6838 -1.6882 1.2263 13 7 2.0184 -0.6906 -1.1962 14 6 2.1462 0.0048 -2.4007 15 6 1.8169 1.3530 -2.4677 16 6 1.9447 2.0284 -3.6618 17 6 2.3991 1.3742 -4.8008 18 6 2.7320 0.0392 -4.7363 19 6 2.6083 -0.6443 -3.5348 20 6 3.2465 -0.7263 -5.9274 21 6 2.9197 0.0134 -7.2230 22 6 3.3967 1.4640 -7.0851 23 6 2.4981 2.1731 -6.0742 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.6054 -0.2618 2.1369 28 1 1.7517 -1.7715 1.2056 29 1 4.0609 -2.2452 4.0344 30 1 2.2490 -1.6318 -1.1527 31 1 1.4621 1.8691 -1.5878 32 1 1.6891 3.0764 -3.7134 33 1 2.8701 -1.6909 -3.4841 34 1 4.3270 -0.8410 -5.8416 35 1 2.7816 -1.7120 -5.9493 36 1 3.4330 -0.4641 -8.0577 37 1 1.8435 -0.0045 -7.3946 38 1 4.4283 1.4792 -6.7333 39 1 3.3302 1.9655 -8.0506 40 1 1.5025 2.2938 -6.5011 41 1 2.9141 3.1555 -5.8507 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695835013.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:00 Heat of formation + Delta-G solvation = -23.770482 kcal Electronic energy + Delta-G solvation = -19038.485938 eV Core-core repulsion = 16301.663596 eV Total energy + Delta-G solvation = -2736.822342 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.88701 -38.59797 -36.31239 -34.68489 -33.43245 -32.13550 -30.16082 -29.29853 -28.34185 -25.19788 -24.37509 -23.38368 -22.90596 -21.47084 -19.84626 -18.53521 -17.86271 -17.14509 -16.53000 -16.22701 -15.79949 -15.29487 -14.81719 -14.74875 -14.57627 -14.32547 -14.10054 -13.74615 -13.71947 -13.35203 -13.27247 -13.04400 -12.90006 -12.66632 -12.51083 -12.42669 -12.19117 -12.01117 -11.66762 -11.33669 -11.25407 -11.19158 -11.06922 -10.60341 -10.44940 -9.48440 -8.22356 -8.01902 -6.30607 0.62161 0.85270 1.36830 1.37880 1.46272 2.38084 2.72741 3.04119 3.13026 3.86189 3.96122 4.13274 4.18458 4.21378 4.36870 4.38059 4.49152 4.51407 4.61191 4.70488 4.76388 4.80571 4.87208 4.97587 5.03926 5.07800 5.14421 5.20252 5.22996 5.24131 5.27389 5.33317 5.43569 5.53729 5.54438 5.63671 5.73588 5.78625 5.95965 6.19778 6.23838 6.69299 6.83113 7.02690 7.38034 8.89074 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.023758 B = 0.004722 C = 0.004292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.266721 B = 5928.174479 C = 6522.005632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.160 3.840 3 H 0.059 0.941 4 C 0.023 3.977 5 C -0.526 4.526 6 H 0.051 0.949 7 C 0.006 3.994 8 N -0.930 5.930 9 Si 0.955 3.045 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.273 1.273 13 N -0.727 5.727 14 C 0.212 3.788 15 C -0.219 4.219 16 C -0.076 4.076 17 C -0.158 4.158 18 C -0.035 4.035 19 C -0.226 4.226 20 C -0.081 4.081 21 C -0.114 4.114 22 C -0.118 4.118 23 C -0.067 4.067 24 H 0.050 0.950 25 H 0.065 0.935 26 H 0.059 0.941 27 H 0.009 0.991 28 H 0.000 1.000 29 H 0.263 0.737 30 H 0.394 0.606 31 H 0.116 0.884 32 H 0.135 0.865 33 H 0.115 0.885 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.064 0.936 38 H 0.057 0.943 39 H 0.083 0.917 40 H 0.075 0.925 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.930 5.875 -20.118 21.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.055 3.945 3 H 0.077 0.923 4 C -0.014 4.014 5 C -0.564 4.564 6 H 0.069 0.931 7 C -0.192 4.192 8 N -0.570 5.570 9 Si 0.781 3.219 10 H -0.196 1.196 11 H -0.207 1.207 12 H -0.198 1.198 13 N -0.353 5.353 14 C 0.107 3.893 15 C -0.241 4.241 16 C -0.095 4.095 17 C -0.160 4.160 18 C -0.035 4.035 19 C -0.249 4.249 20 C -0.118 4.118 21 C -0.151 4.151 22 C -0.155 4.155 23 C -0.104 4.104 24 H 0.069 0.931 25 H 0.084 0.916 26 H 0.078 0.922 27 H 0.027 0.973 28 H 0.018 0.982 29 H 0.072 0.928 30 H 0.228 0.772 31 H 0.134 0.866 32 H 0.153 0.847 33 H 0.133 0.867 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.102 0.898 40 H 0.093 0.907 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.982 5.895 -19.758 20.834 hybrid contribution 0.960 -0.661 1.085 1.593 sum -2.021 5.234 -18.674 19.498 Atomic orbital electron populations 1.22169 0.95500 1.01741 1.01774 1.20861 0.92879 0.95848 0.84916 0.92312 1.19230 0.95069 0.94791 0.92310 1.21435 0.93281 1.33906 1.07780 0.93112 1.25805 1.02953 0.95030 0.95393 1.70057 1.37403 1.36842 1.12727 0.85651 0.80349 0.78452 0.77485 1.19641 1.20694 1.19798 1.44825 1.71686 1.12184 1.06586 1.18065 0.92972 0.92050 0.86240 1.20742 1.10676 0.93315 0.99382 1.21117 0.96958 0.99827 0.91550 1.19600 1.06169 0.93814 0.96395 1.19575 0.96303 0.93437 0.94209 1.20684 1.11177 1.00454 0.92612 1.20524 1.00875 0.98361 0.92078 1.21525 1.01611 0.95693 0.96299 1.21546 0.98977 0.95752 0.99256 1.20332 1.00573 0.97729 0.91770 0.93128 0.91606 0.92162 0.97291 0.98176 0.92800 0.77191 0.86631 0.84749 0.86732 0.90675 0.90632 0.90011 0.91729 0.92422 0.89841 0.90675 0.90848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.24 9.43 71.98 0.68 -4.56 16 2 C 0.16 6.56 2.22 44.99 0.10 6.66 16 3 H 0.06 2.48 6.50 -2.39 -0.02 2.46 16 4 C 0.02 1.19 4.52 29.85 0.13 1.33 16 5 C -0.53 -29.44 8.84 25.60 0.23 -29.21 16 6 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 7 C 0.01 0.35 5.46 84.66 0.46 0.82 16 8 N -0.93 -55.73 13.29 21.45 0.28 -55.45 16 9 Si 0.96 44.82 29.54 68.60 2.03 46.84 16 10 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 12 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 13 N -0.73 -28.34 4.96 -319.19 -1.58 -29.92 16 14 C 0.21 7.61 6.63 38.15 0.25 7.87 16 15 C -0.22 -7.30 8.84 22.33 0.20 -7.10 16 16 C -0.08 -2.15 9.60 22.34 0.21 -1.93 16 17 C -0.16 -4.16 5.74 -19.82 -0.11 -4.27 16 18 C -0.03 -0.96 5.74 -19.87 -0.11 -1.08 16 19 C -0.23 -7.36 9.46 22.49 0.21 -7.15 16 20 C -0.08 -1.73 5.67 29.74 0.17 -1.57 16 21 C -0.11 -1.88 5.98 30.61 0.18 -1.69 16 22 C -0.12 -1.92 5.98 30.61 0.18 -1.73 16 23 C -0.07 -1.28 5.67 29.74 0.17 -1.12 16 24 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 26 H 0.06 1.87 7.72 -2.39 -0.02 1.85 16 27 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.00 -0.01 8.14 -2.39 -0.02 -0.02 16 29 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 30 H 0.39 15.66 8.62 -92.71 -0.80 14.86 16 31 H 0.12 3.85 6.16 -2.91 -0.02 3.84 16 32 H 0.13 3.07 8.05 -2.91 -0.02 3.05 16 33 H 0.11 3.56 8.05 -2.91 -0.02 3.54 16 34 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.08 1.52 8.12 -2.39 -0.02 1.50 16 36 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.06 1.07 8.10 -2.39 -0.02 1.05 16 38 H 0.06 1.02 8.10 -2.39 -0.02 1.00 16 39 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 40 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.07 1.28 8.12 -2.39 -0.02 1.26 16 Total: -1.00 -62.32 327.59 3.88 -58.44 By element: Atomic # 1 Polarization: 24.64 SS G_CDS: 0.20 Total: 24.84 kcal Atomic # 6 Polarization: -47.70 SS G_CDS: 2.95 Total: -44.75 kcal Atomic # 7 Polarization: -84.07 SS G_CDS: -1.30 Total: -85.37 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -62.32 3.88 -58.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695835013.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.667 kcal (2) G-P(sol) polarization free energy of solvation -62.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds