Wall clock time and date at job start Mon Mar 30 2020 06:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47500 * 2 1 4 4 C 1.53001 * 109.47222 * 239.99786 * 2 1 3 5 5 C 1.50699 * 109.47241 * 175.60342 * 4 2 1 6 6 H 1.08002 * 119.99838 * 355.44753 * 5 4 2 7 7 C 1.37874 * 120.00286 * 175.44150 * 5 4 2 8 8 N 1.31512 * 120.00350 * 179.97438 * 7 5 4 9 9 Si 1.86809 * 119.99724 * 0.02562 * 7 5 4 10 10 H 1.48492 * 109.47032 * 89.99483 * 9 7 5 11 11 H 1.48502 * 109.46965 * 209.99729 * 9 7 5 12 12 H 1.48502 * 109.47104 * 329.99292 * 9 7 5 13 13 N 1.46906 * 109.47358 * 119.99625 * 2 1 3 14 14 C 1.46814 * 110.99425 * 41.14487 * 13 2 1 15 15 C 1.51718 * 111.10105 * 148.69802 * 14 13 2 16 16 C 1.51770 * 113.89865 * 67.53459 * 15 14 13 17 17 C 1.53171 * 110.63295 * 293.17428 * 16 15 14 18 18 C 1.51474 * 108.22679 * 83.19270 * 17 16 15 19 19 C 1.38162 * 119.74098 * 110.53945 * 18 17 16 20 20 C 1.38367 * 119.65618 * 179.97438 * 19 18 17 21 21 C 1.38308 * 120.14785 * 359.97438 * 20 19 18 22 22 C 1.38135 * 120.19534 * 359.97109 * 21 20 19 23 23 C 1.37780 * 119.83100 * 290.51432 * 18 17 16 24 24 H 1.09003 * 109.46795 * 172.30556 * 1 2 3 25 25 H 1.08996 * 109.47045 * 292.30193 * 1 2 3 26 26 H 1.08990 * 109.47261 * 52.30501 * 1 2 3 27 27 H 1.09001 * 109.46690 * 295.60048 * 4 2 1 28 28 H 1.08997 * 109.47082 * 55.59937 * 4 2 1 29 29 H 0.97001 * 119.99741 * 180.02562 * 8 7 5 30 30 H 1.08998 * 109.14595 * 28.30015 * 14 13 2 31 31 H 1.08996 * 109.14529 * 269.09276 * 14 13 2 32 32 H 1.09003 * 108.60413 * 188.67703 * 15 14 13 33 33 H 1.09003 * 108.60057 * 306.39801 * 15 14 13 34 34 H 1.08999 * 109.24150 * 53.46586 * 16 15 14 35 35 H 1.08995 * 109.25267 * 172.87378 * 16 15 14 36 36 H 1.08998 * 109.71303 * 202.87645 * 17 16 15 37 37 H 1.09004 * 109.71209 * 323.46620 * 17 16 15 38 38 H 1.08001 * 120.16990 * 359.97438 * 19 18 17 39 39 H 1.08003 * 119.92580 * 179.97438 * 20 19 18 40 40 H 1.08002 * 119.90064 * 180.02562 * 21 20 19 41 41 H 1.08004 * 120.20391 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5430 -0.6277 -1.3049 6 1 4.0754 -0.0443 -0.5682 7 6 4.2386 -1.2869 -2.2961 8 7 5.5503 -1.2048 -2.3450 9 14 3.3178 -2.2955 -3.5706 10 1 2.9734 -1.4334 -4.7296 11 1 4.1753 -3.4189 -4.0267 12 1 2.0726 -2.8362 -2.9686 13 7 2.0197 -0.6924 1.1995 14 6 1.2219 -1.8935 1.4761 15 6 2.0653 -2.9702 2.1328 16 6 2.5269 -2.6196 3.5354 17 6 3.5135 -1.4484 3.5021 18 6 2.7183 -0.1603 3.4497 19 6 2.7073 0.6833 4.5438 20 6 1.9807 1.8598 4.4939 21 6 1.2697 2.1893 3.3543 22 6 1.2816 1.3464 2.2600 23 6 2.0113 0.1629 2.3122 24 1 -0.3633 -1.0185 -0.1376 25 1 -0.3633 0.3900 0.9508 26 1 -0.3633 0.6283 -0.8131 27 1 1.7424 -1.7692 -1.2106 28 1 1.6137 -0.2551 -2.1374 29 1 6.0395 -1.6683 -3.0427 30 1 0.8177 -2.2776 0.5396 31 1 0.3982 -1.6304 2.1398 32 1 1.4816 -3.8895 2.1786 33 1 2.9436 -3.1502 1.5127 34 1 1.6626 -2.3440 4.1396 35 1 3.0139 -3.4870 3.9808 36 1 4.1316 -1.4627 4.3997 37 1 4.1469 -1.5264 2.6184 38 1 3.2630 0.4258 5.4334 39 1 1.9687 2.5223 5.3468 40 1 0.7042 3.1088 3.3195 41 1 0.7260 1.6033 1.3702 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695840679.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:47 Heat of formation + Delta-G solvation = 29.557678 kcal Electronic energy + Delta-G solvation = -20323.125696 eV Core-core repulsion = 17588.615837 eV Total energy + Delta-G solvation = -2734.509859 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.38653 -37.06339 -35.36948 -32.78016 -31.15871 -31.02586 -29.52707 -27.89764 -26.26384 -24.41235 -22.90274 -22.08650 -20.54534 -20.00989 -18.72165 -17.06067 -16.54593 -15.74747 -15.15516 -14.61763 -14.25812 -14.07245 -13.72287 -13.69470 -13.19409 -12.96564 -12.57997 -12.36660 -12.18194 -12.06273 -11.71312 -11.55698 -11.53764 -11.14467 -10.76937 -10.64434 -10.56835 -10.26852 -10.22796 -10.13000 -9.69992 -9.60007 -9.07633 -8.81874 -8.43845 -8.38133 -7.29854 -5.91678 -3.86100 1.70434 1.76339 3.34177 3.42206 3.43558 4.05703 4.33113 4.52870 5.04687 5.11292 5.23671 5.29542 5.36044 5.41469 5.46863 5.53275 5.55976 5.65859 5.73794 5.79718 5.91306 5.93466 6.00308 6.15800 6.21781 6.24997 6.25495 6.34052 6.42672 6.44621 6.59040 6.66958 6.72903 6.79291 6.82242 6.97749 7.10119 7.17519 7.35365 7.70522 7.89416 7.99463 8.69741 9.19104 9.70643 11.22354 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.022035 B = 0.007039 C = 0.006593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.404033 B = 3977.023473 C = 4245.637806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.090 3.910 3 H 0.080 0.920 4 C -0.005 4.005 5 C -0.490 4.490 6 H 0.076 0.924 7 C 0.063 3.937 8 N -0.907 5.907 9 Si 0.872 3.128 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.268 1.268 13 N -0.460 5.460 14 C 0.068 3.932 15 C -0.121 4.121 16 C -0.107 4.107 17 C -0.074 4.074 18 C -0.089 4.089 19 C -0.105 4.105 20 C -0.151 4.151 21 C -0.111 4.111 22 C -0.174 4.174 23 C 0.125 3.875 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.059 0.941 27 H 0.019 0.981 28 H 0.015 0.985 29 H 0.260 0.740 30 H 0.079 0.921 31 H 0.033 0.967 32 H 0.056 0.944 33 H 0.078 0.922 34 H 0.053 0.947 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.090 0.910 38 H 0.118 0.882 39 H 0.113 0.887 40 H 0.113 0.887 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.009 0.809 12.349 15.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.017 4.017 3 H 0.098 0.902 4 C -0.042 4.042 5 C -0.528 4.528 6 H 0.094 0.906 7 C -0.136 4.136 8 N -0.547 5.547 9 Si 0.700 3.300 10 H -0.206 1.206 11 H -0.216 1.216 12 H -0.193 1.193 13 N -0.175 5.175 14 C -0.057 4.057 15 C -0.159 4.159 16 C -0.145 4.145 17 C -0.112 4.112 18 C -0.091 4.091 19 C -0.124 4.124 20 C -0.170 4.170 21 C -0.130 4.130 22 C -0.195 4.195 23 C 0.027 3.973 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.037 0.963 28 H 0.033 0.967 29 H 0.069 0.931 30 H 0.097 0.903 31 H 0.051 0.949 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.109 0.891 38 H 0.136 0.864 39 H 0.131 0.869 40 H 0.131 0.869 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -9.371 0.517 12.080 15.297 hybrid contribution -1.059 -0.188 -0.714 1.291 sum -10.430 0.328 11.366 15.430 Atomic orbital electron populations 1.22804 0.98750 1.02138 1.01531 1.21896 0.90504 0.98624 0.90662 0.90178 1.19661 0.98065 0.95383 0.91127 1.20994 0.89209 1.30172 1.12460 0.90622 1.24986 0.94645 0.96486 0.97521 1.69914 1.06170 1.44365 1.34255 0.86910 0.80180 0.80484 0.82382 1.20615 1.21599 1.19282 1.59440 1.51517 1.05543 1.01024 1.21777 0.93591 0.90402 0.99950 1.21155 1.01277 0.97110 0.96311 1.21246 0.98687 0.97576 0.96979 1.20734 0.96805 0.90860 1.02764 1.19504 0.98712 0.97651 0.93208 1.20915 0.99463 0.94408 0.97591 1.20956 1.00148 0.97623 0.98229 1.20935 0.99576 0.98940 0.93546 1.21908 1.00851 0.96958 0.99741 1.18904 0.94279 0.93330 0.90777 0.92422 0.92628 0.92179 0.96263 0.96676 0.93063 0.90251 0.94871 0.92490 0.90306 0.92857 0.92093 0.92058 0.89150 0.86442 0.86913 0.86884 0.84976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.03 7.55 37.16 0.28 -2.75 16 2 C 0.09 1.76 1.72 -67.71 -0.12 1.65 16 3 H 0.08 1.65 6.71 -51.93 -0.35 1.30 16 4 C 0.00 -0.11 3.58 -27.88 -0.10 -0.21 16 5 C -0.49 -13.84 9.37 -34.44 -0.32 -14.16 16 6 H 0.08 2.37 7.99 -52.49 -0.42 1.95 16 7 C 0.06 1.85 5.47 -17.82 -0.10 1.75 16 8 N -0.91 -28.25 13.96 55.43 0.77 -27.47 16 9 Si 0.87 21.76 27.56 -169.99 -4.69 17.07 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 12 H -0.27 -6.38 6.41 56.52 0.36 -6.02 16 13 N -0.46 -8.75 3.79 -164.46 -0.62 -9.38 16 14 C 0.07 1.13 3.94 -4.52 -0.02 1.11 16 15 C -0.12 -1.85 5.49 -28.01 -0.15 -2.00 16 16 C -0.11 -1.48 5.67 -27.27 -0.15 -1.64 16 17 C -0.07 -1.15 5.54 -27.41 -0.15 -1.30 16 18 C -0.09 -1.45 5.02 -104.44 -0.52 -1.97 16 19 C -0.11 -1.50 9.69 -39.56 -0.38 -1.88 16 20 C -0.15 -2.03 10.05 -39.51 -0.40 -2.43 16 21 C -0.11 -1.57 10.03 -39.59 -0.40 -1.97 16 22 C -0.17 -2.80 7.72 -39.29 -0.30 -3.11 16 23 C 0.12 2.20 4.90 -83.79 -0.41 1.79 16 24 H 0.06 0.87 6.49 -51.93 -0.34 0.54 16 25 H 0.05 0.80 5.77 -51.93 -0.30 0.50 16 26 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.02 0.45 5.75 -51.93 -0.30 0.15 16 28 H 0.02 0.35 7.80 -51.93 -0.40 -0.06 16 29 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 30 H 0.08 1.34 5.38 -51.93 -0.28 1.06 16 31 H 0.03 0.51 7.70 -51.93 -0.40 0.11 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.08 1.40 8.02 -51.93 -0.42 0.99 16 34 H 0.05 0.71 7.88 -51.93 -0.41 0.30 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.81 7.92 -51.93 -0.41 0.40 16 37 H 0.09 1.67 7.86 -51.93 -0.41 1.26 16 38 H 0.12 1.40 7.98 -52.49 -0.42 0.98 16 39 H 0.11 1.23 8.06 -52.48 -0.42 0.80 16 40 H 0.11 1.32 8.06 -52.49 -0.42 0.89 16 41 H 0.13 2.04 4.51 -52.48 -0.24 1.80 16 LS Contribution 308.28 15.07 4.65 4.65 Total: -1.00 -30.73 308.28 -9.51 -40.25 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -6.37 Total: 2.01 kcal Atomic # 6 Polarization: -23.87 SS G_CDS: -3.25 Total: -27.12 kcal Atomic # 7 Polarization: -37.00 SS G_CDS: 0.15 Total: -36.85 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.69 Total: 17.07 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.73 -9.51 -40.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695840679.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.803 kcal (2) G-P(sol) polarization free energy of solvation -30.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds