Wall clock time and date at job start Mon Mar 30 2020 06:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47500 * 2 1 4 4 C 1.53001 * 109.47222 * 239.99786 * 2 1 3 5 5 C 1.50699 * 109.47241 * 175.60342 * 4 2 1 6 6 H 1.08002 * 119.99838 * 355.44753 * 5 4 2 7 7 C 1.37874 * 120.00286 * 175.44150 * 5 4 2 8 8 N 1.31512 * 120.00350 * 179.97438 * 7 5 4 9 9 Si 1.86809 * 119.99724 * 0.02562 * 7 5 4 10 10 H 1.48492 * 109.47032 * 89.99483 * 9 7 5 11 11 H 1.48502 * 109.46965 * 209.99729 * 9 7 5 12 12 H 1.48502 * 109.47104 * 329.99292 * 9 7 5 13 13 N 1.46906 * 109.47358 * 119.99625 * 2 1 3 14 14 C 1.46814 * 110.99425 * 41.14487 * 13 2 1 15 15 C 1.51718 * 111.10105 * 148.69802 * 14 13 2 16 16 C 1.51770 * 113.89865 * 67.53459 * 15 14 13 17 17 C 1.53171 * 110.63295 * 293.17428 * 16 15 14 18 18 C 1.51474 * 108.22679 * 83.19270 * 17 16 15 19 19 C 1.38162 * 119.74098 * 110.53945 * 18 17 16 20 20 C 1.38367 * 119.65618 * 179.97438 * 19 18 17 21 21 C 1.38308 * 120.14785 * 359.97438 * 20 19 18 22 22 C 1.38135 * 120.19534 * 359.97109 * 21 20 19 23 23 C 1.37780 * 119.83100 * 290.51432 * 18 17 16 24 24 H 1.09003 * 109.46795 * 172.30556 * 1 2 3 25 25 H 1.08996 * 109.47045 * 292.30193 * 1 2 3 26 26 H 1.08990 * 109.47261 * 52.30501 * 1 2 3 27 27 H 1.09001 * 109.46690 * 295.60048 * 4 2 1 28 28 H 1.08997 * 109.47082 * 55.59937 * 4 2 1 29 29 H 0.97001 * 119.99741 * 180.02562 * 8 7 5 30 30 H 1.08998 * 109.14595 * 28.30015 * 14 13 2 31 31 H 1.08996 * 109.14529 * 269.09276 * 14 13 2 32 32 H 1.09003 * 108.60413 * 188.67703 * 15 14 13 33 33 H 1.09003 * 108.60057 * 306.39801 * 15 14 13 34 34 H 1.08999 * 109.24150 * 53.46586 * 16 15 14 35 35 H 1.08995 * 109.25267 * 172.87378 * 16 15 14 36 36 H 1.08998 * 109.71303 * 202.87645 * 17 16 15 37 37 H 1.09004 * 109.71209 * 323.46620 * 17 16 15 38 38 H 1.08001 * 120.16990 * 359.97438 * 19 18 17 39 39 H 1.08003 * 119.92580 * 179.97438 * 20 19 18 40 40 H 1.08002 * 119.90064 * 180.02562 * 21 20 19 41 41 H 1.08004 * 120.20391 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5430 -0.6277 -1.3049 6 1 4.0754 -0.0443 -0.5682 7 6 4.2386 -1.2869 -2.2961 8 7 5.5503 -1.2048 -2.3450 9 14 3.3178 -2.2955 -3.5706 10 1 2.9734 -1.4334 -4.7296 11 1 4.1753 -3.4189 -4.0267 12 1 2.0726 -2.8362 -2.9686 13 7 2.0197 -0.6924 1.1995 14 6 1.2219 -1.8935 1.4761 15 6 2.0653 -2.9702 2.1328 16 6 2.5269 -2.6196 3.5354 17 6 3.5135 -1.4484 3.5021 18 6 2.7183 -0.1603 3.4497 19 6 2.7073 0.6833 4.5438 20 6 1.9807 1.8598 4.4939 21 6 1.2697 2.1893 3.3543 22 6 1.2816 1.3464 2.2600 23 6 2.0113 0.1629 2.3122 24 1 -0.3633 -1.0185 -0.1376 25 1 -0.3633 0.3900 0.9508 26 1 -0.3633 0.6283 -0.8131 27 1 1.7424 -1.7692 -1.2106 28 1 1.6137 -0.2551 -2.1374 29 1 6.0395 -1.6683 -3.0427 30 1 0.8177 -2.2776 0.5396 31 1 0.3982 -1.6304 2.1398 32 1 1.4816 -3.8895 2.1786 33 1 2.9436 -3.1502 1.5127 34 1 1.6626 -2.3440 4.1396 35 1 3.0139 -3.4870 3.9808 36 1 4.1316 -1.4627 4.3997 37 1 4.1469 -1.5264 2.6184 38 1 3.2630 0.4258 5.4334 39 1 1.9687 2.5223 5.3468 40 1 0.7042 3.1088 3.3195 41 1 0.7260 1.6033 1.3702 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695840679.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:47 Heat of formation + Delta-G solvation = 12.325229 kcal Electronic energy + Delta-G solvation = -20323.872951 eV Core-core repulsion = 17588.615837 eV Total energy + Delta-G solvation = -2735.257115 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.64761 -38.35029 -36.61751 -34.84218 -32.67833 -32.33512 -30.70759 -29.66277 -27.51936 -25.64075 -24.72837 -23.36372 -21.92270 -21.19948 -20.16485 -18.84060 -18.25395 -17.07418 -16.40032 -16.22287 -15.70449 -15.35902 -15.03781 -14.99446 -14.60741 -14.44848 -14.16918 -13.86582 -13.62698 -13.38529 -13.25105 -13.01549 -12.75088 -12.49603 -12.40730 -12.16959 -11.89933 -11.69698 -11.57126 -11.47619 -11.38945 -11.31143 -11.09169 -10.69353 -10.07827 -9.54475 -8.58127 -8.18648 -6.18091 0.55188 0.60418 1.35594 1.37728 1.48301 2.40600 2.87521 3.01153 3.19322 3.87269 3.92435 4.02644 4.15036 4.19884 4.23342 4.24790 4.37163 4.45572 4.49993 4.60459 4.65433 4.76821 4.81853 4.86453 4.99832 5.00872 5.06436 5.10380 5.12056 5.13850 5.25592 5.28024 5.35139 5.47405 5.52462 5.60153 5.69628 5.72934 5.80820 6.08720 6.34411 6.46338 6.67024 6.88413 7.42162 8.99216 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.022035 B = 0.007039 C = 0.006593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.404033 B = 3977.023473 C = 4245.637806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.095 3.905 3 H 0.059 0.941 4 C -0.001 4.001 5 C -0.489 4.489 6 H 0.025 0.975 7 C -0.002 4.002 8 N -0.959 5.959 9 Si 0.945 3.055 10 H -0.269 1.269 11 H -0.290 1.290 12 H -0.246 1.246 13 N -0.487 5.487 14 C 0.068 3.932 15 C -0.120 4.120 16 C -0.100 4.100 17 C -0.072 4.072 18 C -0.110 4.110 19 C -0.106 4.106 20 C -0.147 4.147 21 C -0.113 4.113 22 C -0.190 4.190 23 C 0.096 3.904 24 H 0.065 0.935 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.022 0.978 28 H 0.023 0.977 29 H 0.261 0.739 30 H 0.072 0.928 31 H 0.047 0.953 32 H 0.082 0.918 33 H 0.042 0.958 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.045 0.955 38 H 0.143 0.857 39 H 0.146 0.854 40 H 0.140 0.860 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.574 0.674 13.668 18.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.013 4.013 3 H 0.077 0.923 4 C -0.038 4.038 5 C -0.527 4.527 6 H 0.043 0.957 7 C -0.197 4.197 8 N -0.602 5.602 9 Si 0.770 3.230 10 H -0.194 1.194 11 H -0.216 1.216 12 H -0.169 1.169 13 N -0.203 5.203 14 C -0.057 4.057 15 C -0.158 4.158 16 C -0.137 4.137 17 C -0.110 4.110 18 C -0.112 4.112 19 C -0.125 4.125 20 C -0.165 4.165 21 C -0.131 4.131 22 C -0.210 4.210 23 C 0.000 4.000 24 H 0.083 0.917 25 H 0.089 0.911 26 H 0.091 0.909 27 H 0.040 0.960 28 H 0.041 0.959 29 H 0.069 0.931 30 H 0.091 0.909 31 H 0.066 0.934 32 H 0.101 0.899 33 H 0.061 0.939 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.064 0.936 38 H 0.161 0.839 39 H 0.163 0.837 40 H 0.158 0.842 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -11.961 0.393 13.416 17.978 hybrid contribution -0.172 -0.040 -1.015 1.030 sum -12.132 0.353 12.401 17.352 Atomic orbital electron populations 1.22647 0.95292 1.03039 1.02904 1.21660 0.93146 0.96845 0.89612 0.92269 1.19594 0.94523 0.96098 0.93630 1.21204 0.91923 1.28787 1.10791 0.95667 1.25946 0.95458 0.98070 1.00197 1.70095 1.08306 1.46132 1.35621 0.85736 0.79344 0.78613 0.79331 1.19437 1.21586 1.16948 1.59371 1.52737 1.06641 1.01513 1.21822 0.93932 0.89919 0.99983 1.21166 1.00019 0.97973 0.96597 1.21206 0.98773 0.97583 0.96163 1.20687 0.96910 0.91797 1.01588 1.19735 0.99091 0.98520 0.93820 1.21247 0.99357 0.94183 0.97685 1.21371 0.98720 0.97504 0.98923 1.21289 0.99437 0.99387 0.92987 1.22026 1.01316 0.96977 1.00682 1.19104 0.95906 0.94116 0.90922 0.91654 0.91142 0.90938 0.96006 0.95861 0.93062 0.90916 0.93434 0.89926 0.93931 0.91580 0.90160 0.89905 0.93607 0.83928 0.83651 0.84231 0.84931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.35 7.55 71.98 0.54 -4.81 16 2 C 0.09 3.75 1.72 44.91 0.08 3.83 16 3 H 0.06 2.53 6.71 -2.39 -0.02 2.52 16 4 C 0.00 -0.04 3.58 29.85 0.11 0.07 16 5 C -0.49 -28.84 9.37 25.60 0.24 -28.60 16 6 H 0.02 1.69 7.99 -2.91 -0.02 1.67 16 7 C 0.00 -0.12 5.47 84.65 0.46 0.35 16 8 N -0.96 -62.37 13.96 21.45 0.30 -62.07 16 9 Si 0.95 45.34 27.56 68.60 1.89 47.24 16 10 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 11 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 12 H -0.25 -10.82 6.41 99.48 0.64 -10.18 16 13 N -0.49 -18.96 3.79 -674.24 -2.55 -21.51 16 14 C 0.07 2.24 3.94 85.90 0.34 2.58 16 15 C -0.12 -3.64 5.49 29.77 0.16 -3.48 16 16 C -0.10 -2.65 5.67 30.25 0.17 -2.48 16 17 C -0.07 -2.26 5.54 30.15 0.17 -2.09 16 18 C -0.11 -3.54 5.02 -19.74 -0.10 -3.64 16 19 C -0.11 -2.80 9.69 22.28 0.22 -2.58 16 20 C -0.15 -3.50 10.05 22.32 0.22 -3.28 16 21 C -0.11 -2.91 10.03 22.26 0.22 -2.69 16 22 C -0.19 -5.96 7.72 22.46 0.17 -5.78 16 23 C 0.10 3.43 4.90 37.88 0.19 3.61 16 24 H 0.06 1.84 6.49 -2.39 -0.02 1.82 16 25 H 0.07 1.89 5.77 -2.39 -0.01 1.88 16 26 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.02 1.01 5.75 -2.39 -0.01 1.00 16 28 H 0.02 1.05 7.80 -2.39 -0.02 1.03 16 29 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 30 H 0.07 2.41 5.38 -2.39 -0.01 2.40 16 31 H 0.05 1.40 7.70 -2.39 -0.02 1.38 16 32 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.04 1.58 8.02 -2.39 -0.02 1.57 16 34 H 0.07 1.61 7.88 -2.39 -0.02 1.59 16 35 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.08 2.13 7.92 -2.39 -0.02 2.11 16 37 H 0.05 1.82 7.86 -2.38 -0.02 1.80 16 38 H 0.14 2.94 7.98 -2.91 -0.02 2.92 16 39 H 0.15 2.51 8.06 -2.91 -0.02 2.49 16 40 H 0.14 2.80 8.06 -2.91 -0.02 2.77 16 41 H 0.13 4.01 4.51 -2.91 -0.01 4.00 16 Total: -1.00 -70.27 308.28 3.76 -66.51 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: 0.93 Total: 18.83 kcal Atomic # 6 Polarization: -52.19 SS G_CDS: 3.19 Total: -49.00 kcal Atomic # 7 Polarization: -81.32 SS G_CDS: -2.25 Total: -83.58 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 1.89 Total: 47.24 kcal Total: -70.27 3.76 -66.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695840679.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.833 kcal (2) G-P(sol) polarization free energy of solvation -70.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds