Wall clock time and date at job start Mon Mar 30 2020 06:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47410 * 2 1 4 4 C 1.53001 * 109.47099 * 239.99544 * 2 1 3 5 5 C 1.50697 * 109.47185 * 175.00515 * 4 2 1 6 6 H 1.08005 * 120.00036 * 359.97438 * 5 4 2 7 7 C 1.37880 * 120.00451 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99491 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00228 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47081 * 60.00121 * 9 7 5 11 11 H 1.48495 * 109.47076 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47159 * 300.00043 * 9 7 5 13 13 N 1.46908 * 109.46798 * 119.99885 * 2 1 3 14 14 C 1.46894 * 110.99862 * 268.70168 * 13 2 1 15 15 H 1.08999 * 109.25257 * 331.35733 * 14 13 2 16 16 C 1.52737 * 109.25485 * 90.82835 * 14 13 2 17 17 C 1.53327 * 108.37437 * 171.35952 * 16 14 13 18 18 C 1.52731 * 108.37422 * 290.07308 * 17 16 14 19 19 C 1.50641 * 110.58793 * 51.05904 * 18 17 16 20 20 C 1.38913 * 117.74852 * 162.52773 * 19 18 17 21 21 C 1.37927 * 120.54287 * 179.80615 * 20 19 18 22 22 C 1.38268 * 119.77340 * 359.95975 * 21 20 19 23 23 C 1.37924 * 119.77181 * 0.10197 * 22 21 20 24 24 C 1.37661 * 122.56713 * 342.46897 * 19 18 17 25 25 H 1.09005 * 109.46934 * 66.25095 * 1 2 3 26 26 H 1.09001 * 109.47347 * 186.24664 * 1 2 3 27 27 H 1.08998 * 109.47383 * 306.25364 * 1 2 3 28 28 H 1.08997 * 109.47241 * 55.00317 * 4 2 1 29 29 H 1.09002 * 109.47232 * 295.00623 * 4 2 1 30 30 H 0.97001 * 119.99578 * 180.02562 * 8 7 5 31 31 H 1.00897 * 111.00011 * 144.74771 * 13 2 1 32 32 H 1.09001 * 109.68537 * 291.08063 * 16 14 13 33 33 H 1.08993 * 109.68493 * 51.59815 * 16 14 13 34 34 H 1.08997 * 109.68134 * 49.79591 * 17 16 14 35 35 H 1.09007 * 109.68196 * 170.35182 * 17 16 14 36 36 H 1.08999 * 109.25437 * 171.34006 * 18 17 16 37 37 H 1.09003 * 109.25581 * 290.77323 * 18 17 16 38 38 H 1.07993 * 119.73008 * 359.78526 * 20 19 18 39 39 H 1.08003 * 120.11514 * 179.97438 * 21 20 19 40 40 H 1.08005 * 120.11362 * 180.12654 * 22 21 20 41 41 H 1.08001 * 119.73045 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5419 -0.6151 -1.3126 6 1 4.0789 -0.0857 -0.5395 7 6 4.2304 -1.1929 -2.3582 8 7 3.5764 -1.8372 -3.2999 9 14 6.0920 -1.0606 -2.4371 10 1 6.6844 -1.6868 -1.2279 11 1 6.5870 -1.7608 -3.6494 12 1 6.4845 0.3703 -2.4964 13 7 2.0196 -0.6925 1.1995 14 6 2.2243 0.2519 2.3059 15 1 2.4653 1.2343 1.8998 16 6 0.9419 0.3481 3.1298 17 6 1.2397 1.1628 4.3941 18 6 2.1420 0.3298 5.3022 19 6 3.3324 -0.1863 4.5367 20 6 4.4251 -0.6366 5.2668 21 6 5.5440 -1.1248 4.6248 22 6 5.5790 -1.1675 3.2432 23 6 4.4956 -0.7197 2.5165 24 6 3.3687 -0.2255 3.1612 25 1 -0.3633 0.4139 -0.9407 26 1 -0.3634 -1.0216 0.1118 27 1 -0.3634 0.6077 0.8287 28 1 1.6054 -0.2619 -2.1369 29 1 1.7515 -1.7716 -1.2055 30 1 4.0608 -2.2440 -4.0352 31 1 2.8654 -1.2056 1.0009 32 1 0.1671 0.8458 2.5464 33 1 0.6075 -0.6516 3.4068 34 1 1.7461 2.0892 4.1232 35 1 0.3079 1.3910 4.9118 36 1 2.4880 0.9482 6.1304 37 1 1.5751 -0.5136 5.6965 38 1 4.3985 -0.6039 6.3459 39 1 6.3898 -1.4727 5.1992 40 1 6.4515 -1.5506 2.7348 41 1 4.5235 -0.7538 1.4374 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695842267.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:35 Heat of formation + Delta-G solvation = 1.196918 kcal Electronic energy + Delta-G solvation = -19745.740072 eV Core-core repulsion = 17010.000398 eV Total energy + Delta-G solvation = -2735.739674 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.99941 -36.85830 -35.29810 -32.98579 -31.82469 -30.08204 -29.20798 -27.51271 -26.97602 -23.25985 -22.90750 -22.43133 -21.25976 -19.59919 -18.95895 -16.57656 -16.37806 -15.35680 -15.27223 -14.72050 -14.53108 -14.23342 -13.91605 -13.60055 -13.17257 -12.91106 -12.57357 -12.24053 -12.08047 -11.83787 -11.60158 -11.41701 -11.22146 -11.18774 -10.98207 -10.78843 -10.74602 -10.54514 -10.35368 -10.15406 -9.97834 -9.13741 -9.09950 -8.58430 -8.43311 -8.37546 -7.58970 -6.05191 -4.08868 1.59001 1.61859 3.28229 3.33859 3.35270 3.97602 4.40286 4.77894 4.84053 4.86496 5.13193 5.22932 5.27971 5.32601 5.39416 5.43978 5.59876 5.71102 5.73045 5.89011 5.94320 5.97052 6.04331 6.13480 6.21933 6.25609 6.31605 6.34618 6.40659 6.52528 6.66867 6.70649 6.80531 6.92079 6.96505 6.99335 7.25398 7.54187 7.61990 7.94671 8.08071 8.29687 8.35069 8.97289 9.55391 11.05566 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.018133 B = 0.007227 C = 0.005345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.775894 B = 3873.650678 C = 5236.927071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.086 3.914 3 H 0.033 0.967 4 C 0.017 3.983 5 C -0.527 4.527 6 H 0.051 0.949 7 C 0.063 3.937 8 N -0.889 5.889 9 Si 0.886 3.114 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.678 5.678 14 C 0.126 3.874 15 H 0.053 0.947 16 C -0.106 4.106 17 C -0.121 4.121 18 C -0.077 4.077 19 C -0.075 4.075 20 C -0.128 4.128 21 C -0.126 4.126 22 C -0.122 4.122 23 C -0.115 4.115 24 C -0.071 4.071 25 H 0.047 0.953 26 H 0.054 0.946 27 H 0.039 0.961 28 H 0.022 0.978 29 H 0.025 0.975 30 H 0.262 0.738 31 H 0.357 0.643 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.115 0.885 39 H 0.116 0.884 40 H 0.120 0.880 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.437 3.976 16.000 16.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.024 4.024 3 H 0.051 0.949 4 C -0.020 4.020 5 C -0.565 4.565 6 H 0.069 0.931 7 C -0.139 4.139 8 N -0.527 5.527 9 Si 0.713 3.287 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.203 1.203 13 N -0.314 5.314 14 C 0.016 3.984 15 H 0.070 0.930 16 C -0.144 4.144 17 C -0.159 4.159 18 C -0.114 4.114 19 C -0.076 4.076 20 C -0.147 4.147 21 C -0.144 4.144 22 C -0.140 4.140 23 C -0.133 4.133 24 C -0.071 4.071 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.058 0.942 28 H 0.040 0.960 29 H 0.044 0.956 30 H 0.071 0.929 31 H 0.182 0.818 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.133 0.867 39 H 0.134 0.866 40 H 0.138 0.862 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.031 3.669 16.004 16.544 hybrid contribution 2.043 0.413 -0.504 2.145 sum 0.012 4.082 15.499 16.028 Atomic orbital electron populations 1.21899 0.96737 1.01256 0.99585 1.21739 0.93535 0.95902 0.91199 0.94949 1.19337 0.95378 0.96225 0.91065 1.21135 0.92219 1.34701 1.08418 0.93098 1.24974 0.98119 0.95141 0.95678 1.69948 1.35585 1.35345 1.11870 0.86757 0.86039 0.78249 0.77621 1.20073 1.21198 1.20299 1.60777 1.38526 1.25947 1.06185 1.20422 0.91656 0.94792 0.91541 0.92982 1.21661 0.97183 1.00616 0.94990 1.21579 0.99065 0.98649 0.96580 1.20442 0.94202 0.99386 0.97352 1.19562 0.95632 0.99564 0.92805 1.21045 0.93697 1.00696 0.99213 1.21002 0.98081 1.00614 0.94675 1.21078 0.98652 1.00180 0.94075 1.21489 0.92934 0.97643 1.01246 1.19846 0.95546 0.98692 0.93064 0.93439 0.92667 0.94186 0.95997 0.95645 0.92851 0.81841 0.91455 0.91057 0.91975 0.91665 0.91349 0.90831 0.86673 0.86557 0.86227 0.84746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 9.25 37.16 0.34 -2.11 16 2 C 0.09 1.78 2.61 -67.71 -0.18 1.60 16 3 H 0.03 0.69 7.24 -51.93 -0.38 0.32 16 4 C 0.02 0.44 4.52 -27.88 -0.13 0.31 16 5 C -0.53 -14.23 8.10 -34.44 -0.28 -14.51 16 6 H 0.05 1.33 6.60 -52.48 -0.35 0.98 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.21 13.29 55.43 0.74 -25.47 16 9 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 N -0.68 -13.22 6.16 -101.13 -0.62 -13.85 16 14 C 0.13 2.11 2.54 -69.04 -0.18 1.94 16 15 H 0.05 0.93 7.23 -51.93 -0.38 0.55 16 16 C -0.11 -1.51 5.25 -26.70 -0.14 -1.65 16 17 C -0.12 -1.40 5.98 -26.70 -0.16 -1.56 16 18 C -0.08 -0.88 5.67 -28.05 -0.16 -1.04 16 19 C -0.08 -1.07 5.74 -104.61 -0.60 -1.67 16 20 C -0.13 -1.68 9.61 -39.45 -0.38 -2.05 16 21 C -0.13 -1.68 10.05 -39.68 -0.40 -2.08 16 22 C -0.12 -1.87 10.05 -39.69 -0.40 -2.26 16 23 C -0.11 -1.99 8.76 -39.45 -0.35 -2.34 16 24 C -0.07 -1.17 5.54 -104.62 -0.58 -1.75 16 25 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.04 0.63 5.95 -51.93 -0.31 0.32 16 28 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.26 7.33 8.31 -40.82 -0.34 7.00 16 31 H 0.36 7.61 4.54 -39.29 -0.18 7.43 16 32 H 0.07 0.94 6.01 -51.93 -0.31 0.63 16 33 H 0.07 1.06 8.10 -51.93 -0.42 0.64 16 34 H 0.06 0.73 8.10 -51.93 -0.42 0.31 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.67 8.13 -51.93 -0.42 0.24 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.12 1.20 8.05 -52.49 -0.42 0.78 16 39 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 40 H 0.12 1.67 8.06 -52.48 -0.42 1.25 16 41 H 0.13 2.61 5.65 -52.49 -0.30 2.31 16 LS Contribution 318.31 15.07 4.80 4.80 Total: -1.00 -28.71 318.31 -10.18 -38.89 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -6.40 Total: 6.96 kcal Atomic # 6 Polarization: -23.83 SS G_CDS: -3.67 Total: -27.50 kcal Atomic # 7 Polarization: -39.43 SS G_CDS: 0.11 Total: -39.32 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.71 -10.18 -38.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695842267.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.091 kcal (2) G-P(sol) polarization free energy of solvation -28.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds