Wall clock time and date at job start Mon Mar 30 2020 06:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47410 * 2 1 4 4 C 1.53001 * 109.47099 * 239.99544 * 2 1 3 5 5 C 1.50697 * 109.47185 * 175.00515 * 4 2 1 6 6 H 1.08005 * 120.00036 * 359.97438 * 5 4 2 7 7 C 1.37880 * 120.00451 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99491 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00228 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47081 * 60.00121 * 9 7 5 11 11 H 1.48495 * 109.47076 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47159 * 300.00043 * 9 7 5 13 13 N 1.46908 * 109.46798 * 119.99885 * 2 1 3 14 14 C 1.46894 * 110.99862 * 268.70168 * 13 2 1 15 15 H 1.08999 * 109.25257 * 331.35733 * 14 13 2 16 16 C 1.52737 * 109.25485 * 90.82835 * 14 13 2 17 17 C 1.53327 * 108.37437 * 171.35952 * 16 14 13 18 18 C 1.52731 * 108.37422 * 290.07308 * 17 16 14 19 19 C 1.50641 * 110.58793 * 51.05904 * 18 17 16 20 20 C 1.38913 * 117.74852 * 162.52773 * 19 18 17 21 21 C 1.37927 * 120.54287 * 179.80615 * 20 19 18 22 22 C 1.38268 * 119.77340 * 359.95975 * 21 20 19 23 23 C 1.37924 * 119.77181 * 0.10197 * 22 21 20 24 24 C 1.37661 * 122.56713 * 342.46897 * 19 18 17 25 25 H 1.09005 * 109.46934 * 66.25095 * 1 2 3 26 26 H 1.09001 * 109.47347 * 186.24664 * 1 2 3 27 27 H 1.08998 * 109.47383 * 306.25364 * 1 2 3 28 28 H 1.08997 * 109.47241 * 55.00317 * 4 2 1 29 29 H 1.09002 * 109.47232 * 295.00623 * 4 2 1 30 30 H 0.97001 * 119.99578 * 180.02562 * 8 7 5 31 31 H 1.00897 * 111.00011 * 144.74771 * 13 2 1 32 32 H 1.09001 * 109.68537 * 291.08063 * 16 14 13 33 33 H 1.08993 * 109.68493 * 51.59815 * 16 14 13 34 34 H 1.08997 * 109.68134 * 49.79591 * 17 16 14 35 35 H 1.09007 * 109.68196 * 170.35182 * 17 16 14 36 36 H 1.08999 * 109.25437 * 171.34006 * 18 17 16 37 37 H 1.09003 * 109.25581 * 290.77323 * 18 17 16 38 38 H 1.07993 * 119.73008 * 359.78526 * 20 19 18 39 39 H 1.08003 * 120.11514 * 179.97438 * 21 20 19 40 40 H 1.08005 * 120.11362 * 180.12654 * 22 21 20 41 41 H 1.08001 * 119.73045 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5419 -0.6151 -1.3126 6 1 4.0789 -0.0857 -0.5395 7 6 4.2304 -1.1929 -2.3582 8 7 3.5764 -1.8372 -3.2999 9 14 6.0920 -1.0606 -2.4371 10 1 6.6844 -1.6868 -1.2279 11 1 6.5870 -1.7608 -3.6494 12 1 6.4845 0.3703 -2.4964 13 7 2.0196 -0.6925 1.1995 14 6 2.2243 0.2519 2.3059 15 1 2.4653 1.2343 1.8998 16 6 0.9419 0.3481 3.1298 17 6 1.2397 1.1628 4.3941 18 6 2.1420 0.3298 5.3022 19 6 3.3324 -0.1863 4.5367 20 6 4.4251 -0.6366 5.2668 21 6 5.5440 -1.1248 4.6248 22 6 5.5790 -1.1675 3.2432 23 6 4.4956 -0.7197 2.5165 24 6 3.3687 -0.2255 3.1612 25 1 -0.3633 0.4139 -0.9407 26 1 -0.3634 -1.0216 0.1118 27 1 -0.3634 0.6077 0.8287 28 1 1.6054 -0.2619 -2.1369 29 1 1.7515 -1.7716 -1.2055 30 1 4.0608 -2.2440 -4.0352 31 1 2.8654 -1.2056 1.0009 32 1 0.1671 0.8458 2.5464 33 1 0.6075 -0.6516 3.4068 34 1 1.7461 2.0892 4.1232 35 1 0.3079 1.3910 4.9118 36 1 2.4880 0.9482 6.1304 37 1 1.5751 -0.5136 5.6965 38 1 4.3985 -0.6039 6.3459 39 1 6.3898 -1.4727 5.1992 40 1 6.4515 -1.5506 2.7348 41 1 4.5235 -0.7538 1.4374 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695842267.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:35 Heat of formation + Delta-G solvation = -14.135079 kcal Electronic energy + Delta-G solvation = -19746.404917 eV Core-core repulsion = 17010.000398 eV Total energy + Delta-G solvation = -2736.404520 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.15996 -38.31493 -36.54317 -34.84229 -33.37587 -31.17309 -30.58085 -29.26308 -28.37277 -25.11558 -24.16658 -23.52301 -22.49101 -21.23759 -20.12163 -18.57284 -17.78709 -16.68920 -16.52047 -16.41093 -15.89092 -15.67815 -15.09353 -14.92340 -14.41103 -14.20944 -13.97584 -13.72259 -13.51423 -13.30948 -13.24265 -12.83169 -12.73732 -12.57795 -12.48814 -12.38673 -12.26638 -12.01657 -11.77107 -11.63023 -11.16025 -11.13583 -10.82093 -10.61121 -9.79208 -9.53424 -9.08819 -8.22967 -6.33486 0.46110 0.47919 1.34847 1.36425 1.44239 2.35819 2.83395 3.08726 3.46773 3.71424 3.81750 4.05566 4.19209 4.19559 4.26002 4.33581 4.44342 4.45449 4.57010 4.61535 4.66888 4.71888 4.84596 4.94447 5.05086 5.07758 5.10186 5.13002 5.18118 5.25310 5.31847 5.41383 5.44670 5.48845 5.57059 5.61872 5.67405 5.79454 5.81087 6.14943 6.18328 6.43305 6.60836 6.81092 7.35009 8.88455 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.018133 B = 0.007227 C = 0.005345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.775894 B = 3873.650678 C = 5236.927071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.095 3.905 3 H 0.024 0.976 4 C 0.025 3.975 5 C -0.534 4.534 6 H 0.054 0.946 7 C 0.009 3.991 8 N -0.927 5.927 9 Si 0.952 3.048 10 H -0.265 1.265 11 H -0.282 1.282 12 H -0.271 1.271 13 N -0.680 5.680 14 C 0.126 3.874 15 H 0.036 0.964 16 C -0.101 4.101 17 C -0.115 4.115 18 C -0.076 4.076 19 C -0.078 4.078 20 C -0.124 4.124 21 C -0.121 4.121 22 C -0.137 4.137 23 C -0.142 4.142 24 C -0.093 4.093 25 H 0.049 0.951 26 H 0.050 0.950 27 H 0.067 0.933 28 H -0.004 1.004 29 H -0.004 1.004 30 H 0.264 0.736 31 H 0.343 0.657 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.152 0.848 39 H 0.148 0.852 40 H 0.124 0.876 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.992 4.719 19.364 19.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.015 4.015 3 H 0.042 0.958 4 C -0.013 4.013 5 C -0.572 4.572 6 H 0.072 0.928 7 C -0.190 4.190 8 N -0.567 5.567 9 Si 0.777 3.223 10 H -0.190 1.190 11 H -0.207 1.207 12 H -0.196 1.196 13 N -0.314 5.314 14 C 0.016 3.984 15 H 0.053 0.947 16 C -0.139 4.139 17 C -0.153 4.153 18 C -0.112 4.112 19 C -0.078 4.078 20 C -0.142 4.142 21 C -0.138 4.138 22 C -0.155 4.155 23 C -0.161 4.161 24 C -0.094 4.094 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.085 0.915 28 H 0.015 0.985 29 H 0.015 0.985 30 H 0.072 0.928 31 H 0.166 0.834 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.111 0.889 36 H 0.114 0.886 37 H 0.104 0.896 38 H 0.170 0.830 39 H 0.166 0.834 40 H 0.142 0.858 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.599 4.427 19.385 19.948 hybrid contribution 1.910 0.171 -1.513 2.443 sum 0.311 4.598 17.872 18.456 Atomic orbital electron populations 1.21806 0.94250 1.01616 1.00907 1.21559 0.95461 0.94610 0.89874 0.95779 1.19203 0.94883 0.94713 0.92478 1.21451 0.93208 1.34262 1.08321 0.92803 1.25834 1.03082 0.94776 0.95310 1.70080 1.37538 1.36481 1.12614 0.85690 0.80154 0.78499 0.77943 1.18970 1.20739 1.19616 1.60893 1.37808 1.26497 1.06222 1.20502 0.93736 0.93120 0.90998 0.94666 1.21616 0.95429 1.00910 0.95989 1.21571 1.00489 0.97932 0.95321 1.20538 0.93060 1.00131 0.97504 1.19952 0.97247 0.98746 0.91867 1.21491 0.92707 0.99000 1.01013 1.21374 0.99312 0.99420 0.93741 1.21243 0.98245 1.00567 0.95421 1.21359 0.94771 1.00146 0.99835 1.19883 0.94992 1.00115 0.94371 0.93178 0.93077 0.91460 0.98525 0.98531 0.92762 0.83450 0.91369 0.91640 0.92265 0.88921 0.88632 0.89566 0.83025 0.83409 0.85767 0.88163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.62 9.25 71.98 0.67 -3.95 16 2 C 0.09 4.08 2.61 44.91 0.12 4.20 16 3 H 0.02 1.07 7.24 -2.39 -0.02 1.06 16 4 C 0.02 1.32 4.52 29.85 0.14 1.46 16 5 C -0.53 -30.21 8.10 25.60 0.21 -30.00 16 6 H 0.05 2.95 6.60 -2.91 -0.02 2.94 16 7 C 0.01 0.49 5.46 84.66 0.46 0.96 16 8 N -0.93 -56.64 13.29 21.45 0.28 -56.36 16 9 Si 0.95 44.58 29.54 68.60 2.03 46.61 16 10 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 11 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 12 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 13 N -0.68 -27.55 6.16 -473.87 -2.92 -30.47 16 14 C 0.13 4.27 2.54 44.06 0.11 4.39 16 15 H 0.04 1.30 7.23 -2.39 -0.02 1.28 16 16 C -0.10 -2.72 5.25 30.62 0.16 -2.56 16 17 C -0.12 -2.30 5.98 30.61 0.18 -2.12 16 18 C -0.08 -1.43 5.67 29.74 0.17 -1.26 16 19 C -0.08 -2.01 5.74 -19.86 -0.11 -2.12 16 20 C -0.12 -2.78 9.61 22.36 0.21 -2.56 16 21 C -0.12 -2.88 10.05 22.20 0.22 -2.66 16 22 C -0.14 -4.13 10.05 22.20 0.22 -3.91 16 23 C -0.14 -5.11 8.76 22.36 0.20 -4.92 16 24 C -0.09 -3.05 5.54 -19.86 -0.11 -3.16 16 25 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 26 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.07 2.05 5.95 -2.39 -0.01 2.03 16 28 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 29 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 30 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 31 H 0.34 15.55 4.54 -89.70 -0.41 15.14 16 32 H 0.07 1.78 6.01 -2.39 -0.01 1.77 16 33 H 0.06 1.84 8.10 -2.39 -0.02 1.82 16 34 H 0.06 1.23 8.10 -2.39 -0.02 1.21 16 35 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 36 H 0.10 1.35 8.13 -2.39 -0.02 1.33 16 37 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.15 2.29 8.05 -2.91 -0.02 2.27 16 39 H 0.15 2.57 8.06 -2.91 -0.02 2.54 16 40 H 0.12 3.47 8.06 -2.91 -0.02 3.45 16 41 H 0.10 4.20 5.65 -2.91 -0.02 4.18 16 Total: -1.00 -64.89 318.31 2.83 -62.05 By element: Atomic # 1 Polarization: 25.78 SS G_CDS: 0.60 Total: 26.38 kcal Atomic # 6 Polarization: -51.06 SS G_CDS: 2.84 Total: -48.22 kcal Atomic # 7 Polarization: -84.19 SS G_CDS: -2.64 Total: -86.83 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -64.89 2.83 -62.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695842267.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.917 kcal (2) G-P(sol) polarization free energy of solvation -64.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds