Wall clock time and date at job start Mon Mar 30 2020 06:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.46776 * 2 1 4 4 C 1.52997 * 109.47151 * 240.00006 * 2 1 3 5 5 C 1.50696 * 109.47161 * 175.00261 * 4 2 1 6 6 H 1.08000 * 120.00339 * 359.97438 * 5 4 2 7 7 C 1.37880 * 120.00188 * 179.97438 * 5 4 2 8 8 N 1.31513 * 120.00142 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00094 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47176 * 180.02562 * 9 7 5 11 11 H 1.48501 * 109.47390 * 300.00300 * 9 7 5 12 12 H 1.48506 * 109.46750 * 60.00450 * 9 7 5 13 13 N 1.46898 * 109.47038 * 119.99613 * 2 1 3 14 14 C 1.46901 * 111.00017 * 274.29763 * 13 2 1 15 15 H 1.08999 * 109.24842 * 34.67337 * 14 13 2 16 16 C 1.52722 * 109.25099 * 275.24582 * 14 13 2 17 17 C 1.53324 * 108.40119 * 188.66272 * 16 14 13 18 18 C 1.52737 * 108.37899 * 69.86467 * 17 16 14 19 19 C 1.50636 * 110.57278 * 308.84498 * 18 17 16 20 20 C 1.38909 * 117.74750 * 197.51351 * 19 18 17 21 21 C 1.37930 * 120.54630 * 180.56775 * 20 19 18 22 22 C 1.38263 * 119.76762 * 359.97438 * 21 20 19 23 23 C 1.37933 * 119.77360 * 359.88121 * 22 21 20 24 24 C 1.37659 * 122.56233 * 17.84868 * 19 18 17 25 25 H 1.08997 * 109.47653 * 295.87111 * 1 2 3 26 26 H 1.09006 * 109.46899 * 55.86470 * 1 2 3 27 27 H 1.09001 * 109.47219 * 175.86500 * 1 2 3 28 28 H 1.08997 * 109.47316 * 54.99792 * 4 2 1 29 29 H 1.09007 * 109.46799 * 295.00061 * 4 2 1 30 30 H 0.96996 * 120.00514 * 179.97438 * 8 7 5 31 31 H 1.00906 * 110.99813 * 38.25487 * 13 2 1 32 32 H 1.09006 * 109.68011 * 308.39090 * 16 14 13 33 33 H 1.09007 * 109.67935 * 68.93467 * 16 14 13 34 34 H 1.08997 * 109.67804 * 310.14164 * 17 16 14 35 35 H 1.09000 * 109.68730 * 189.58843 * 17 16 14 36 36 H 1.08998 * 109.25744 * 188.56198 * 18 17 16 37 37 H 1.08997 * 109.25372 * 69.12510 * 18 17 16 38 38 H 1.08010 * 119.72643 * 0.58522 * 20 19 18 39 39 H 1.07998 * 120.11608 * 180.02562 * 21 20 19 40 40 H 1.08000 * 120.11182 * 179.85489 * 22 21 20 41 41 H 1.08003 * 119.72607 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5418 -0.6150 -1.3127 6 1 4.0789 -0.0855 -0.5396 7 6 4.2304 -1.1936 -2.3577 8 7 3.5765 -1.8378 -3.2995 9 14 6.0920 -1.0612 -2.4367 10 1 6.5871 -1.7614 -3.6492 11 1 6.4845 0.3697 -2.4971 12 1 6.6845 -1.6864 -1.2269 13 7 2.0196 -0.6924 1.1995 14 6 2.0982 0.2267 2.3427 15 1 1.2822 0.9468 2.2816 16 6 3.4306 0.9718 2.2992 17 6 3.5884 1.7581 3.6059 18 6 3.8136 0.7630 4.7426 19 6 2.7546 -0.3081 4.7259 20 6 2.5819 -1.0649 5.8779 21 6 1.6368 -2.0685 5.9222 22 6 0.8540 -2.3238 4.8115 23 6 1.0219 -1.5715 3.6677 24 6 1.9722 -0.5593 3.6215 25 1 -0.3634 0.4484 0.9246 26 1 -0.3633 0.5767 -0.8507 27 1 -0.3634 -1.0250 -0.0741 28 1 1.6054 -0.2618 -2.1369 29 1 1.7516 -1.7715 -1.2055 30 1 4.0608 -2.2446 -4.0349 31 1 1.4427 -1.4913 1.4167 32 1 4.2478 0.2571 2.1998 33 1 3.4391 1.6596 1.4535 34 1 2.6846 2.3363 3.7978 35 1 4.4445 2.4285 3.5300 36 1 3.7759 1.2910 5.6954 37 1 4.7940 0.3010 4.6269 38 1 3.1926 -0.8655 6.7462 39 1 1.5082 -2.6523 6.8217 40 1 0.1139 -3.1099 4.8393 41 1 0.4097 -1.7714 2.8006 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695842274.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:38 Heat of formation + Delta-G solvation = 5.158701 kcal Electronic energy + Delta-G solvation = -19598.801997 eV Core-core repulsion = 16863.234119 eV Total energy + Delta-G solvation = -2735.567878 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.08755 -36.95236 -35.31599 -32.98504 -31.77004 -30.10978 -29.31677 -27.34897 -26.94769 -23.33783 -22.93159 -22.51842 -21.38243 -19.56702 -19.11371 -16.68718 -16.05943 -15.43637 -15.33443 -14.79922 -14.44672 -14.25190 -13.96477 -13.40359 -13.13113 -13.00205 -12.62386 -12.42605 -12.18913 -11.86148 -11.71922 -11.53077 -11.40302 -11.27807 -11.00716 -10.74288 -10.53503 -10.50525 -10.24132 -10.11843 -9.87214 -9.20420 -8.95461 -8.70684 -8.51105 -8.19969 -7.47699 -5.82735 -3.79749 1.46778 1.47774 3.43866 3.47556 3.51107 3.84225 4.60881 4.71915 4.79744 4.82245 5.01604 5.11059 5.21922 5.31119 5.43484 5.49938 5.54377 5.61321 5.67715 5.79479 5.80452 5.92558 5.97805 6.02623 6.06394 6.07961 6.18394 6.21757 6.39042 6.50687 6.58152 6.64361 6.66129 6.74077 6.83856 7.08146 7.10886 7.61759 7.74052 8.07098 8.11385 8.22570 8.65889 9.25186 9.81060 11.29549 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.020394 B = 0.005821 C = 0.005317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.630926 B = 4809.020709 C = 5264.837438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.088 3.912 3 H 0.065 0.935 4 C 0.034 3.966 5 C -0.485 4.485 6 H 0.059 0.941 7 C 0.049 3.951 8 N -0.905 5.905 9 Si 0.888 3.112 10 H -0.291 1.291 11 H -0.280 1.280 12 H -0.278 1.278 13 N -0.658 5.658 14 C 0.127 3.873 15 H 0.046 0.954 16 C -0.106 4.106 17 C -0.120 4.120 18 C -0.080 4.080 19 C -0.070 4.070 20 C -0.124 4.124 21 C -0.127 4.127 22 C -0.123 4.123 23 C -0.117 4.117 24 C -0.063 4.063 25 H 0.037 0.963 26 H 0.056 0.944 27 H 0.051 0.949 28 H 0.016 0.984 29 H 0.016 0.984 30 H 0.257 0.743 31 H 0.332 0.668 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.119 0.881 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.447 3.880 17.509 18.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.022 4.022 3 H 0.083 0.917 4 C -0.003 4.003 5 C -0.524 4.524 6 H 0.077 0.923 7 C -0.150 4.150 8 N -0.547 5.547 9 Si 0.717 3.283 10 H -0.217 1.217 11 H -0.206 1.206 12 H -0.204 1.204 13 N -0.290 5.290 14 C 0.017 3.983 15 H 0.064 0.936 16 C -0.145 4.145 17 C -0.158 4.158 18 C -0.116 4.116 19 C -0.071 4.071 20 C -0.142 4.142 21 C -0.145 4.145 22 C -0.141 4.141 23 C -0.136 4.136 24 C -0.064 4.064 25 H 0.056 0.944 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.035 0.965 29 H 0.034 0.966 30 H 0.066 0.934 31 H 0.153 0.847 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.137 0.863 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.754 3.849 17.158 17.980 hybrid contribution 0.016 -0.088 0.088 0.126 sum -3.737 3.761 17.246 18.042 Atomic orbital electron populations 1.22580 0.99677 1.01368 1.00431 1.21864 0.89735 0.98258 0.92303 0.91657 1.19095 0.96274 0.95310 0.89636 1.21116 0.91857 1.32708 1.06695 0.92298 1.24999 0.97853 0.96011 0.96108 1.69951 1.35201 1.37103 1.12402 0.86724 0.86623 0.77903 0.77065 1.21698 1.20577 1.20420 1.60745 1.57741 1.08431 1.02080 1.20325 0.97271 0.93248 0.87443 0.93638 1.21564 0.97740 0.98902 0.96244 1.21578 1.01608 0.97479 0.95122 1.20479 0.97215 0.94823 0.99125 1.19604 0.96867 0.97497 0.93106 1.21104 0.98933 0.96542 0.97652 1.20990 0.96804 0.98269 0.98412 1.21004 0.99925 0.99741 0.93439 1.21139 0.98490 0.95917 0.98018 1.19791 0.95251 0.96374 0.94964 0.94439 0.92477 0.93012 0.96532 0.96598 0.93363 0.84735 0.90403 0.91276 0.92159 0.91474 0.91305 0.90542 0.86505 0.86473 0.86325 0.86242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.06 9.15 37.16 0.34 -2.72 16 2 C 0.09 1.77 2.33 -67.72 -0.16 1.61 16 3 H 0.07 1.34 7.18 -51.93 -0.37 0.97 16 4 C 0.03 0.88 4.65 -27.89 -0.13 0.75 16 5 C -0.49 -13.70 8.84 -34.44 -0.30 -14.01 16 6 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 7 C 0.05 1.44 5.46 -17.82 -0.10 1.34 16 8 N -0.91 -27.72 13.29 55.43 0.74 -26.98 16 9 Si 0.89 22.37 29.54 -169.99 -5.02 17.35 16 10 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 11 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 12 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 13 N -0.66 -12.45 5.76 -101.14 -0.58 -13.03 16 14 C 0.13 2.04 2.33 -69.04 -0.16 1.88 16 15 H 0.05 0.72 7.13 -51.93 -0.37 0.35 16 16 C -0.11 -1.69 5.39 -26.71 -0.14 -1.83 16 17 C -0.12 -1.48 5.98 -26.70 -0.16 -1.64 16 18 C -0.08 -0.94 5.67 -28.05 -0.16 -1.10 16 19 C -0.07 -0.95 5.74 -104.62 -0.60 -1.55 16 20 C -0.12 -1.50 9.61 -39.45 -0.38 -1.88 16 21 C -0.13 -1.47 10.05 -39.68 -0.40 -1.87 16 22 C -0.12 -1.52 10.05 -39.68 -0.40 -1.92 16 23 C -0.12 -1.65 8.85 -39.44 -0.35 -1.99 16 24 C -0.06 -0.95 5.55 -104.62 -0.58 -1.53 16 25 H 0.04 0.56 7.43 -51.93 -0.39 0.17 16 26 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 31 H 0.33 5.98 5.79 -39.29 -0.23 5.76 16 32 H 0.08 1.39 8.10 -51.93 -0.42 0.97 16 33 H 0.07 1.15 7.55 -51.92 -0.39 0.76 16 34 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.67 8.13 -51.93 -0.42 0.25 16 37 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.12 1.14 8.05 -52.48 -0.42 0.71 16 39 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 40 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 41 H 0.12 1.61 6.53 -52.48 -0.34 1.27 16 LS Contribution 324.56 15.07 4.89 4.89 Total: -1.00 -30.71 324.56 -10.36 -41.06 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -6.70 Total: 3.17 kcal Atomic # 6 Polarization: -22.78 SS G_CDS: -3.68 Total: -26.46 kcal Atomic # 7 Polarization: -40.17 SS G_CDS: 0.15 Total: -40.01 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.71 -10.36 -41.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695842274.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.223 kcal (2) G-P(sol) polarization free energy of solvation -30.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds