Wall clock time and date at job start Mon Mar 30 2020 06:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.46776 * 2 1 4 4 C 1.52997 * 109.47151 * 240.00006 * 2 1 3 5 5 C 1.50696 * 109.47161 * 175.00261 * 4 2 1 6 6 H 1.08000 * 120.00339 * 359.97438 * 5 4 2 7 7 C 1.37880 * 120.00188 * 179.97438 * 5 4 2 8 8 N 1.31513 * 120.00142 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00094 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47176 * 180.02562 * 9 7 5 11 11 H 1.48501 * 109.47390 * 300.00300 * 9 7 5 12 12 H 1.48506 * 109.46750 * 60.00450 * 9 7 5 13 13 N 1.46898 * 109.47038 * 119.99613 * 2 1 3 14 14 C 1.46901 * 111.00017 * 274.29763 * 13 2 1 15 15 H 1.08999 * 109.24842 * 34.67337 * 14 13 2 16 16 C 1.52722 * 109.25099 * 275.24582 * 14 13 2 17 17 C 1.53324 * 108.40119 * 188.66272 * 16 14 13 18 18 C 1.52737 * 108.37899 * 69.86467 * 17 16 14 19 19 C 1.50636 * 110.57278 * 308.84498 * 18 17 16 20 20 C 1.38909 * 117.74750 * 197.51351 * 19 18 17 21 21 C 1.37930 * 120.54630 * 180.56775 * 20 19 18 22 22 C 1.38263 * 119.76762 * 359.97438 * 21 20 19 23 23 C 1.37933 * 119.77360 * 359.88121 * 22 21 20 24 24 C 1.37659 * 122.56233 * 17.84868 * 19 18 17 25 25 H 1.08997 * 109.47653 * 295.87111 * 1 2 3 26 26 H 1.09006 * 109.46899 * 55.86470 * 1 2 3 27 27 H 1.09001 * 109.47219 * 175.86500 * 1 2 3 28 28 H 1.08997 * 109.47316 * 54.99792 * 4 2 1 29 29 H 1.09007 * 109.46799 * 295.00061 * 4 2 1 30 30 H 0.96996 * 120.00514 * 179.97438 * 8 7 5 31 31 H 1.00906 * 110.99813 * 38.25487 * 13 2 1 32 32 H 1.09006 * 109.68011 * 308.39090 * 16 14 13 33 33 H 1.09007 * 109.67935 * 68.93467 * 16 14 13 34 34 H 1.08997 * 109.67804 * 310.14164 * 17 16 14 35 35 H 1.09000 * 109.68730 * 189.58843 * 17 16 14 36 36 H 1.08998 * 109.25744 * 188.56198 * 18 17 16 37 37 H 1.08997 * 109.25372 * 69.12510 * 18 17 16 38 38 H 1.08010 * 119.72643 * 0.58522 * 20 19 18 39 39 H 1.07998 * 120.11608 * 180.02562 * 21 20 19 40 40 H 1.08000 * 120.11182 * 179.85489 * 22 21 20 41 41 H 1.08003 * 119.72607 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5418 -0.6150 -1.3127 6 1 4.0789 -0.0855 -0.5396 7 6 4.2304 -1.1936 -2.3577 8 7 3.5765 -1.8378 -3.2995 9 14 6.0920 -1.0612 -2.4367 10 1 6.5871 -1.7614 -3.6492 11 1 6.4845 0.3697 -2.4971 12 1 6.6845 -1.6864 -1.2269 13 7 2.0196 -0.6924 1.1995 14 6 2.0982 0.2267 2.3427 15 1 1.2822 0.9468 2.2816 16 6 3.4306 0.9718 2.2992 17 6 3.5884 1.7581 3.6059 18 6 3.8136 0.7630 4.7426 19 6 2.7546 -0.3081 4.7259 20 6 2.5819 -1.0649 5.8779 21 6 1.6368 -2.0685 5.9222 22 6 0.8540 -2.3238 4.8115 23 6 1.0219 -1.5715 3.6677 24 6 1.9722 -0.5593 3.6215 25 1 -0.3634 0.4484 0.9246 26 1 -0.3633 0.5767 -0.8507 27 1 -0.3634 -1.0250 -0.0741 28 1 1.6054 -0.2618 -2.1369 29 1 1.7516 -1.7715 -1.2055 30 1 4.0608 -2.2446 -4.0349 31 1 1.4427 -1.4913 1.4167 32 1 4.2478 0.2571 2.1998 33 1 3.4391 1.6596 1.4535 34 1 2.6846 2.3363 3.7978 35 1 4.4445 2.4285 3.5300 36 1 3.7759 1.2910 5.6954 37 1 4.7940 0.3010 4.6269 38 1 3.1926 -0.8655 6.7462 39 1 1.5082 -2.6523 6.8217 40 1 0.1139 -3.1099 4.8393 41 1 0.4097 -1.7714 2.8006 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695842274.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:38 Heat of formation + Delta-G solvation = -11.572769 kcal Electronic energy + Delta-G solvation = -19599.527528 eV Core-core repulsion = 16863.234119 eV Total energy + Delta-G solvation = -2736.293409 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.14805 -38.32080 -36.50220 -34.85650 -33.31275 -31.13014 -30.56138 -29.21641 -28.21864 -25.13250 -24.14504 -23.63792 -22.53393 -21.19935 -20.19310 -18.40660 -17.64559 -16.68303 -16.46041 -16.36252 -16.00541 -15.43584 -15.16561 -14.59978 -14.48451 -14.20438 -14.12716 -13.80675 -13.51548 -13.31368 -13.22393 -12.93352 -12.81570 -12.59615 -12.46756 -12.35284 -12.25392 -11.92128 -11.73258 -11.48025 -11.12159 -11.07935 -11.04195 -10.46975 -9.73522 -9.50297 -8.91243 -8.08129 -6.12199 0.49123 0.50951 1.40517 1.43779 1.50907 2.47951 2.86147 3.23852 3.43561 3.72196 3.81555 4.04121 4.15150 4.20647 4.25204 4.31420 4.37415 4.44217 4.51391 4.54184 4.58308 4.68050 4.81942 4.91142 5.01374 5.05412 5.11631 5.13659 5.19051 5.21029 5.28301 5.35175 5.49116 5.51704 5.64026 5.65422 5.69866 5.81768 5.91410 6.16519 6.35922 6.51022 6.71688 7.01280 7.52833 9.04077 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.020394 B = 0.005821 C = 0.005317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.630926 B = 4809.020709 C = 5264.837438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.099 3.901 3 H 0.060 0.940 4 C 0.039 3.961 5 C -0.494 4.494 6 H 0.058 0.942 7 C -0.007 4.007 8 N -0.942 5.942 9 Si 0.955 3.045 10 H -0.287 1.287 11 H -0.268 1.268 12 H -0.274 1.274 13 N -0.676 5.676 14 C 0.133 3.867 15 H 0.048 0.952 16 C -0.106 4.106 17 C -0.112 4.112 18 C -0.078 4.078 19 C -0.083 4.083 20 C -0.127 4.127 21 C -0.125 4.125 22 C -0.129 4.129 23 C -0.134 4.134 24 C -0.088 4.088 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.051 0.949 28 H -0.008 1.008 29 H -0.012 1.012 30 H 0.258 0.742 31 H 0.335 0.665 32 H 0.051 0.949 33 H 0.052 0.948 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.096 0.904 37 H 0.075 0.925 38 H 0.144 0.856 39 H 0.147 0.853 40 H 0.139 0.861 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.946 4.371 20.216 21.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.011 4.011 3 H 0.078 0.922 4 C 0.002 3.998 5 C -0.533 4.533 6 H 0.076 0.924 7 C -0.203 4.203 8 N -0.584 5.584 9 Si 0.781 3.219 10 H -0.213 1.213 11 H -0.193 1.193 12 H -0.200 1.200 13 N -0.308 5.308 14 C 0.023 3.977 15 H 0.066 0.934 16 C -0.144 4.144 17 C -0.150 4.150 18 C -0.115 4.115 19 C -0.083 4.083 20 C -0.145 4.145 21 C -0.143 4.143 22 C -0.147 4.147 23 C -0.153 4.153 24 C -0.089 4.089 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.070 0.930 28 H 0.010 0.990 29 H 0.006 0.994 30 H 0.066 0.934 31 H 0.156 0.844 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.087 0.913 35 H 0.100 0.900 36 H 0.115 0.885 37 H 0.094 0.906 38 H 0.162 0.838 39 H 0.164 0.836 40 H 0.156 0.844 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -3.257 4.353 19.881 20.611 hybrid contribution -0.166 -0.282 -0.717 0.788 sum -3.423 4.071 19.164 19.889 Atomic orbital electron populations 1.22429 0.96931 1.01779 1.01830 1.21504 0.91878 0.96940 0.90730 0.92204 1.18973 0.95259 0.93985 0.91583 1.21456 0.93288 1.32128 1.06419 0.92406 1.25857 1.02797 0.95798 0.95852 1.70087 1.37077 1.38180 1.13091 0.85660 0.80768 0.78420 0.77097 1.21273 1.19337 1.19979 1.60601 1.58084 1.09334 1.02817 1.20270 0.97302 0.92879 0.87201 0.93444 1.21527 0.96722 0.98332 0.97866 1.21534 1.02670 0.97475 0.93307 1.20519 0.96561 0.94386 0.99994 1.19882 0.96951 0.98299 0.93207 1.21448 0.99096 0.96041 0.97888 1.21394 0.95820 0.97986 0.99067 1.21301 1.00472 0.99827 0.93093 1.21238 0.98778 0.96477 0.98797 1.19772 0.96872 0.97350 0.94858 0.91962 0.92220 0.92958 0.98970 0.99389 0.93359 0.84436 0.93063 0.92963 0.91338 0.89987 0.88545 0.90645 0.83838 0.83562 0.84353 0.86681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.75 9.15 71.98 0.66 -5.09 16 2 C 0.10 4.10 2.33 44.91 0.10 4.20 16 3 H 0.06 2.52 7.18 -2.39 -0.02 2.50 16 4 C 0.04 2.11 4.65 29.85 0.14 2.25 16 5 C -0.49 -28.71 8.84 25.60 0.23 -28.49 16 6 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 7 C -0.01 -0.44 5.46 84.66 0.46 0.02 16 8 N -0.94 -59.15 13.29 21.45 0.28 -58.86 16 9 Si 0.95 46.50 29.54 68.60 2.03 48.53 16 10 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 11 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 12 H -0.27 -13.10 7.11 99.48 0.71 -12.39 16 13 N -0.68 -26.14 5.76 -473.91 -2.73 -28.87 16 14 C 0.13 4.27 2.33 44.05 0.10 4.38 16 15 H 0.05 1.49 7.13 -2.39 -0.02 1.47 16 16 C -0.11 -3.38 5.39 30.61 0.16 -3.22 16 17 C -0.11 -2.59 5.98 30.62 0.18 -2.40 16 18 C -0.08 -1.64 5.67 29.74 0.17 -1.47 16 19 C -0.08 -2.08 5.74 -19.86 -0.11 -2.19 16 20 C -0.13 -2.66 9.61 22.36 0.21 -2.44 16 21 C -0.12 -2.50 10.05 22.20 0.22 -2.27 16 22 C -0.13 -2.92 10.05 22.20 0.22 -2.70 16 23 C -0.13 -3.67 8.85 22.36 0.20 -3.47 16 24 C -0.09 -2.56 5.55 -19.86 -0.11 -2.67 16 25 H 0.06 1.79 7.43 -2.39 -0.02 1.77 16 26 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 27 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 28 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 29 H -0.01 -0.72 8.14 -2.38 -0.02 -0.74 16 30 H 0.26 15.38 8.31 -92.71 -0.77 14.60 16 31 H 0.33 12.38 5.79 -89.69 -0.52 11.86 16 32 H 0.05 1.87 8.10 -2.38 -0.02 1.85 16 33 H 0.05 1.78 7.55 -2.38 -0.02 1.76 16 34 H 0.07 1.48 8.10 -2.39 -0.02 1.46 16 35 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.10 1.52 8.13 -2.39 -0.02 1.50 16 37 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.14 2.18 8.05 -2.91 -0.02 2.16 16 39 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 40 H 0.14 2.48 8.06 -2.91 -0.02 2.45 16 41 H 0.12 3.11 6.53 -2.91 -0.02 3.10 16 Total: -1.00 -67.41 324.56 2.90 -64.51 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: 0.48 Total: 20.27 kcal Atomic # 6 Polarization: -48.41 SS G_CDS: 2.84 Total: -45.57 kcal Atomic # 7 Polarization: -85.29 SS G_CDS: -2.44 Total: -87.73 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.53 kcal Total: -67.41 2.90 -64.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695842274.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.937 kcal (2) G-P(sol) polarization free energy of solvation -67.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds