Wall clock time and date at job start Mon Mar 30 2020 06:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 C 1.53004 * 109.47083 * 120.00077 * 2 1 3 5 5 C 1.50702 * 109.47006 * 184.99905 * 4 2 1 6 6 H 1.07997 * 119.99830 * 0.02562 * 5 4 2 7 7 C 1.37880 * 120.00036 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99914 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99835 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47425 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46753 * 120.00006 * 9 7 5 12 12 H 1.48502 * 109.47295 * 239.99904 * 9 7 5 13 13 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 14 14 C 1.39678 * 119.99747 * 84.71969 * 13 2 1 15 15 C 1.38660 * 119.80870 * 0.02562 * 14 13 2 16 16 C 1.38089 * 119.68524 * 179.62619 * 15 14 13 17 17 C 1.38015 * 119.85460 * 0.65153 * 16 15 14 18 18 C 1.38936 * 120.71029 * 359.75694 * 17 16 15 19 19 C 1.37579 * 119.72245 * 359.81715 * 18 17 16 20 20 C 1.50623 * 122.60188 * 180.42484 * 19 18 17 21 21 C 1.52734 * 110.59150 * 342.31278 * 20 19 18 22 22 C 1.53330 * 108.36918 * 51.06438 * 21 20 19 23 23 C 1.50638 * 117.73465 * 179.63915 * 18 17 16 24 24 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 25 25 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 27 27 H 1.08993 * 109.47108 * 304.99684 * 4 2 1 28 28 H 1.08998 * 109.47048 * 65.00196 * 4 2 1 29 29 H 0.96995 * 119.99815 * 179.97438 * 8 7 5 30 30 H 0.97001 * 120.00384 * 265.00562 * 13 2 1 31 31 H 1.08000 * 120.15402 * 359.87807 * 15 14 13 32 32 H 1.07998 * 120.07195 * 180.38298 * 16 15 14 33 33 H 1.08002 * 119.65217 * 179.79208 * 17 16 15 34 34 H 1.09001 * 109.25384 * 102.60113 * 20 19 18 35 35 H 1.09003 * 109.24996 * 222.03083 * 20 19 18 36 36 H 1.08992 * 109.68508 * 170.78235 * 21 20 19 37 37 H 1.08998 * 109.68232 * 291.34790 * 21 20 19 38 38 H 1.09002 * 109.68236 * 49.85546 * 22 21 20 39 39 H 1.08998 * 109.68362 * 170.41410 * 22 21 20 40 40 H 1.09007 * 109.24928 * 42.18414 * 23 18 17 41 41 H 1.08997 * 109.25984 * 282.75857 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5419 -0.6150 1.3127 6 1 4.0789 -0.0855 0.5396 7 6 4.2305 -1.1936 2.3578 8 7 3.5765 -1.8379 3.2995 9 14 6.0922 -1.0624 2.4360 10 1 6.5838 -0.2918 1.2656 11 1 6.4872 -0.3669 3.6872 12 1 6.6856 -2.4236 2.4178 13 7 2.0184 -0.6906 -1.1962 14 6 2.1462 0.0048 -2.4007 15 6 1.8102 1.3488 -2.4597 16 6 1.9450 2.0358 -3.6500 17 6 2.3996 1.3783 -4.7751 18 6 2.7296 0.0297 -4.7240 19 6 2.6059 -0.6584 -3.5391 20 6 2.9540 -2.1180 -3.4080 21 6 3.0168 -2.7808 -4.7827 22 6 3.9252 -1.9371 -5.6848 23 6 3.2109 -0.6229 -5.9935 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6054 -0.2618 2.1369 28 1 1.7517 -1.7715 1.2056 29 1 4.0609 -2.2452 4.0344 30 1 2.2490 -1.6318 -1.1527 31 1 1.4488 1.8569 -1.5779 32 1 1.6910 3.0842 -3.7015 33 1 2.5005 1.9179 -5.7052 34 1 3.9230 -2.2139 -2.9182 35 1 2.1955 -2.6154 -2.8035 36 1 3.4260 -3.7864 -4.6870 37 1 2.0163 -2.8302 -5.2124 38 1 4.8647 -1.7325 -5.1714 39 1 4.1226 -2.4743 -6.6124 40 1 3.9004 0.0495 -6.5042 41 1 2.3574 -0.8214 -6.6417 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695842674.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:06 Heat of formation + Delta-G solvation = -7.622809 kcal Electronic energy + Delta-G solvation = -19494.719561 eV Core-core repulsion = 16758.597434 eV Total energy + Delta-G solvation = -2736.122126 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.84996 -36.87726 -35.33217 -33.16845 -31.94341 -29.99169 -29.50114 -27.46812 -27.11661 -23.49596 -23.23141 -22.60516 -21.07397 -19.93718 -18.75164 -16.87443 -16.28734 -15.57939 -15.31203 -14.63419 -14.50211 -14.06654 -13.71873 -13.65152 -13.25100 -12.91912 -12.78608 -12.39125 -12.14937 -11.84433 -11.72657 -11.44298 -11.40642 -11.29455 -11.10724 -10.79287 -10.78165 -10.59359 -10.33586 -10.24980 -9.96328 -9.53276 -9.35404 -9.03216 -8.43760 -8.14683 -6.69012 -6.06158 -4.08025 1.84513 2.11229 3.27631 3.35932 3.41367 4.16667 4.29068 4.42338 4.83819 4.91930 5.00506 5.30709 5.34108 5.40637 5.44531 5.61515 5.67373 5.71989 5.79201 5.84286 5.90992 5.99608 6.01864 6.06998 6.11354 6.16448 6.20434 6.32210 6.43085 6.44898 6.54676 6.65726 6.81021 6.88348 7.00817 7.10306 7.34023 7.51843 7.57246 7.91674 8.12248 8.33747 8.48612 8.98791 9.56814 11.04875 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.018616 B = 0.006021 C = 0.005303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.734623 B = 4649.253440 C = 5278.512310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.146 3.854 3 H 0.067 0.933 4 C 0.015 3.985 5 C -0.514 4.514 6 H 0.058 0.942 7 C 0.057 3.943 8 N -0.895 5.895 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.715 5.715 14 C 0.237 3.763 15 C -0.212 4.212 16 C -0.072 4.072 17 C -0.202 4.202 18 C -0.033 4.033 19 C -0.162 4.162 20 C -0.073 4.073 21 C -0.115 4.115 22 C -0.119 4.119 23 C -0.077 4.077 24 H 0.045 0.955 25 H 0.050 0.950 26 H 0.057 0.943 27 H 0.030 0.970 28 H 0.020 0.980 29 H 0.260 0.740 30 H 0.399 0.601 31 H 0.120 0.880 32 H 0.111 0.889 33 H 0.107 0.893 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.069 0.931 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.189 1.735 -15.807 16.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.041 3.959 3 H 0.085 0.915 4 C -0.022 4.022 5 C -0.552 4.552 6 H 0.076 0.924 7 C -0.144 4.144 8 N -0.535 5.535 9 Si 0.717 3.283 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.340 5.340 14 C 0.129 3.871 15 C -0.235 4.235 16 C -0.091 4.091 17 C -0.223 4.223 18 C -0.034 4.034 19 C -0.167 4.167 20 C -0.110 4.110 21 C -0.152 4.152 22 C -0.156 4.156 23 C -0.114 4.114 24 H 0.064 0.936 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.048 0.952 28 H 0.038 0.962 29 H 0.070 0.930 30 H 0.235 0.765 31 H 0.138 0.862 32 H 0.129 0.871 33 H 0.125 0.875 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.235 1.731 -15.420 15.851 hybrid contribution 1.117 -0.206 0.333 1.183 sum -2.118 1.525 -15.088 15.312 Atomic orbital electron populations 1.22290 0.97794 1.01454 1.00744 1.21200 0.91175 0.97199 0.86286 0.91463 1.19391 0.96350 0.95697 0.90740 1.21220 0.91773 1.34188 1.08054 0.92407 1.25002 0.98336 0.95333 0.95698 1.69964 1.35424 1.36008 1.12100 0.86569 0.85934 0.77761 0.77987 1.19732 1.21027 1.21062 1.45081 1.70048 1.12520 1.06375 1.17953 0.91623 0.91329 0.86145 1.20580 1.10718 0.93408 0.98826 1.20678 0.97291 0.98616 0.92526 1.20655 1.08813 0.94434 0.98371 1.19206 0.97251 0.93386 0.93562 1.18956 1.09465 0.95855 0.92399 1.20232 1.01643 0.91887 0.97213 1.21490 0.99852 0.98323 0.95554 1.21535 0.98987 0.95718 0.99398 1.20425 0.99695 0.96374 0.94897 0.93617 0.93046 0.92350 0.95156 0.96178 0.93039 0.76486 0.86236 0.87058 0.87527 0.91096 0.91594 0.91893 0.91970 0.91647 0.92030 0.91264 0.91153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 9.40 37.16 0.35 -2.45 16 2 C 0.15 2.91 2.21 -67.93 -0.15 2.76 16 3 H 0.07 1.38 6.48 -51.93 -0.34 1.04 16 4 C 0.02 0.38 4.52 -27.88 -0.13 0.25 16 5 C -0.51 -13.99 8.84 -34.44 -0.30 -14.30 16 6 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 7 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 8 N -0.90 -26.23 13.29 55.43 0.74 -25.50 16 9 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 10 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 N -0.72 -13.52 4.83 -52.07 -0.25 -13.77 16 14 C 0.24 4.24 6.61 -83.64 -0.55 3.69 16 15 C -0.21 -3.61 8.80 -39.48 -0.35 -3.96 16 16 C -0.07 -1.09 10.04 -39.72 -0.40 -1.49 16 17 C -0.20 -2.92 9.60 -39.40 -0.38 -3.30 16 18 C -0.03 -0.49 5.74 -104.63 -0.60 -1.09 16 19 C -0.16 -2.64 5.75 -104.42 -0.60 -3.24 16 20 C -0.07 -1.06 4.87 -28.06 -0.14 -1.19 16 21 C -0.11 -1.35 5.98 -26.70 -0.16 -1.51 16 22 C -0.12 -1.32 5.98 -26.70 -0.16 -1.48 16 23 C -0.08 -0.90 5.67 -28.05 -0.16 -1.06 16 24 H 0.04 0.72 7.63 -51.93 -0.40 0.33 16 25 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 26 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.26 7.22 8.31 -40.82 -0.34 6.89 16 30 H 0.40 7.59 6.64 -40.82 -0.27 7.32 16 31 H 0.12 2.01 6.04 -52.49 -0.32 1.69 16 32 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 33 H 0.11 1.30 8.05 -52.49 -0.42 0.88 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.07 0.96 7.00 -51.93 -0.36 0.59 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.72 8.10 -51.93 -0.42 0.29 16 38 H 0.06 0.78 8.10 -51.93 -0.42 0.36 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.73 8.13 -51.92 -0.42 0.31 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 323.84 15.07 4.88 4.88 Total: -1.00 -28.89 323.84 -10.19 -39.08 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -6.72 Total: 5.57 kcal Atomic # 6 Polarization: -23.03 SS G_CDS: -3.82 Total: -26.85 kcal Atomic # 7 Polarization: -39.75 SS G_CDS: 0.48 Total: -39.27 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -28.89 -10.19 -39.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695842674.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.458 kcal (2) G-P(sol) polarization free energy of solvation -28.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds