Wall clock time and date at job start Mon Mar 30 2020 06:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 C 1.53004 * 109.47083 * 120.00077 * 2 1 3 5 5 C 1.50702 * 109.47006 * 184.99905 * 4 2 1 6 6 H 1.07997 * 119.99830 * 0.02562 * 5 4 2 7 7 C 1.37880 * 120.00036 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99914 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99835 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47425 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46753 * 120.00006 * 9 7 5 12 12 H 1.48502 * 109.47295 * 239.99904 * 9 7 5 13 13 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 14 14 C 1.39678 * 119.99747 * 84.71969 * 13 2 1 15 15 C 1.38660 * 119.80870 * 0.02562 * 14 13 2 16 16 C 1.38089 * 119.68524 * 179.62619 * 15 14 13 17 17 C 1.38015 * 119.85460 * 0.65153 * 16 15 14 18 18 C 1.38936 * 120.71029 * 359.75694 * 17 16 15 19 19 C 1.37579 * 119.72245 * 359.81715 * 18 17 16 20 20 C 1.50623 * 122.60188 * 180.42484 * 19 18 17 21 21 C 1.52734 * 110.59150 * 342.31278 * 20 19 18 22 22 C 1.53330 * 108.36918 * 51.06438 * 21 20 19 23 23 C 1.50638 * 117.73465 * 179.63915 * 18 17 16 24 24 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 25 25 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 27 27 H 1.08993 * 109.47108 * 304.99684 * 4 2 1 28 28 H 1.08998 * 109.47048 * 65.00196 * 4 2 1 29 29 H 0.96995 * 119.99815 * 179.97438 * 8 7 5 30 30 H 0.97001 * 120.00384 * 265.00562 * 13 2 1 31 31 H 1.08000 * 120.15402 * 359.87807 * 15 14 13 32 32 H 1.07998 * 120.07195 * 180.38298 * 16 15 14 33 33 H 1.08002 * 119.65217 * 179.79208 * 17 16 15 34 34 H 1.09001 * 109.25384 * 102.60113 * 20 19 18 35 35 H 1.09003 * 109.24996 * 222.03083 * 20 19 18 36 36 H 1.08992 * 109.68508 * 170.78235 * 21 20 19 37 37 H 1.08998 * 109.68232 * 291.34790 * 21 20 19 38 38 H 1.09002 * 109.68236 * 49.85546 * 22 21 20 39 39 H 1.08998 * 109.68362 * 170.41410 * 22 21 20 40 40 H 1.09007 * 109.24928 * 42.18414 * 23 18 17 41 41 H 1.08997 * 109.25984 * 282.75857 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5419 -0.6150 1.3127 6 1 4.0789 -0.0855 0.5396 7 6 4.2305 -1.1936 2.3578 8 7 3.5765 -1.8379 3.2995 9 14 6.0922 -1.0624 2.4360 10 1 6.5838 -0.2918 1.2656 11 1 6.4872 -0.3669 3.6872 12 1 6.6856 -2.4236 2.4178 13 7 2.0184 -0.6906 -1.1962 14 6 2.1462 0.0048 -2.4007 15 6 1.8102 1.3488 -2.4597 16 6 1.9450 2.0358 -3.6500 17 6 2.3996 1.3783 -4.7751 18 6 2.7296 0.0297 -4.7240 19 6 2.6059 -0.6584 -3.5391 20 6 2.9540 -2.1180 -3.4080 21 6 3.0168 -2.7808 -4.7827 22 6 3.9252 -1.9371 -5.6848 23 6 3.2109 -0.6229 -5.9935 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6054 -0.2618 2.1369 28 1 1.7517 -1.7715 1.2056 29 1 4.0609 -2.2452 4.0344 30 1 2.2490 -1.6318 -1.1527 31 1 1.4488 1.8569 -1.5779 32 1 1.6910 3.0842 -3.7015 33 1 2.5005 1.9179 -5.7052 34 1 3.9230 -2.2139 -2.9182 35 1 2.1955 -2.6154 -2.8035 36 1 3.4260 -3.7864 -4.6870 37 1 2.0163 -2.8302 -5.2124 38 1 4.8647 -1.7325 -5.1714 39 1 4.1226 -2.4743 -6.6124 40 1 3.9004 0.0495 -6.5042 41 1 2.3574 -0.8214 -6.6417 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695842674.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:05 Heat of formation + Delta-G solvation = -21.346690 kcal Electronic energy + Delta-G solvation = -19495.314673 eV Core-core repulsion = 16758.597434 eV Total energy + Delta-G solvation = -2736.717238 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.04207 -38.25803 -36.53582 -34.99900 -33.51526 -31.12278 -30.77049 -29.26677 -28.43829 -25.18847 -24.51121 -23.75875 -22.43447 -21.30033 -19.92377 -18.56178 -18.07022 -16.97534 -16.52057 -16.39854 -15.69065 -15.39237 -15.04143 -14.71154 -14.42313 -14.37014 -14.27562 -13.69331 -13.58150 -13.35306 -13.23381 -13.12899 -12.68966 -12.68168 -12.49923 -12.39868 -12.32640 -11.96996 -11.73887 -11.36708 -11.31009 -11.17959 -11.03452 -10.64389 -10.57662 -9.32422 -8.23052 -8.04595 -6.30857 0.64172 0.88245 1.34136 1.36193 1.48209 2.37387 2.73094 3.06555 3.12470 3.83323 3.90177 4.07644 4.17106 4.29832 4.34306 4.35932 4.48736 4.55862 4.60769 4.65058 4.72603 4.77265 4.88348 4.98195 5.02217 5.04310 5.06906 5.15559 5.19848 5.22483 5.25175 5.39959 5.45713 5.49544 5.53572 5.66661 5.77830 5.82098 5.93397 6.18951 6.23573 6.69290 6.83053 7.02162 7.37759 8.88806 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.018616 B = 0.006021 C = 0.005303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.734623 B = 4649.253440 C = 5278.512310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.159 3.841 3 H 0.059 0.941 4 C 0.023 3.977 5 C -0.522 4.522 6 H 0.050 0.950 7 C 0.006 3.994 8 N -0.929 5.929 9 Si 0.954 3.046 10 H -0.271 1.271 11 H -0.278 1.278 12 H -0.278 1.278 13 N -0.724 5.724 14 C 0.211 3.789 15 C -0.231 4.231 16 C -0.076 4.076 17 C -0.200 4.200 18 C -0.039 4.039 19 C -0.176 4.176 20 C -0.073 4.073 21 C -0.111 4.111 22 C -0.117 4.117 23 C -0.076 4.076 24 H 0.059 0.941 25 H 0.049 0.951 26 H 0.065 0.935 27 H 0.009 0.991 28 H 0.000 1.000 29 H 0.263 0.737 30 H 0.394 0.606 31 H 0.114 0.886 32 H 0.136 0.864 33 H 0.136 0.864 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.053 0.947 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.590 2.287 -18.382 18.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.054 3.946 3 H 0.077 0.923 4 C -0.014 4.014 5 C -0.560 4.560 6 H 0.068 0.932 7 C -0.192 4.192 8 N -0.570 5.570 9 Si 0.780 3.220 10 H -0.196 1.196 11 H -0.203 1.203 12 H -0.204 1.204 13 N -0.351 5.351 14 C 0.105 3.895 15 C -0.254 4.254 16 C -0.095 4.095 17 C -0.220 4.220 18 C -0.040 4.040 19 C -0.180 4.180 20 C -0.110 4.110 21 C -0.148 4.148 22 C -0.154 4.154 23 C -0.113 4.113 24 H 0.078 0.922 25 H 0.069 0.931 26 H 0.084 0.916 27 H 0.027 0.973 28 H 0.018 0.982 29 H 0.072 0.928 30 H 0.229 0.771 31 H 0.132 0.868 32 H 0.154 0.846 33 H 0.154 0.846 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.072 0.928 39 H 0.106 0.894 40 H 0.104 0.896 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.638 2.301 -18.024 18.361 hybrid contribution 0.922 -0.338 1.068 1.450 sum -1.717 1.963 -16.957 17.156 Atomic orbital electron populations 1.22163 0.95489 1.01716 1.01781 1.20873 0.92898 0.95890 0.84967 0.92325 1.19238 0.95122 0.94766 0.92311 1.21466 0.93220 1.33682 1.07666 0.93204 1.25797 1.02881 0.95091 0.95436 1.70069 1.37204 1.36949 1.12759 0.85557 0.80517 0.77922 0.78003 1.19585 1.20341 1.20367 1.44917 1.71369 1.12231 1.06561 1.18236 0.93148 0.91931 0.86166 1.20724 1.11600 0.93346 0.99698 1.21006 0.96674 0.99849 0.91928 1.21070 1.07203 0.94475 0.99237 1.19670 0.96250 0.93802 0.94241 1.19248 1.09498 0.96671 0.92626 1.20230 1.00319 0.91532 0.98919 1.21490 1.00620 0.98825 0.93889 1.21544 0.98038 0.95672 1.00186 1.20514 1.00666 0.96646 0.93456 0.92161 0.93147 0.91608 0.97253 0.98200 0.92816 0.77074 0.86806 0.84571 0.84643 0.92793 0.92430 0.90708 0.91368 0.92830 0.89368 0.89612 0.89437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.25 9.40 71.98 0.68 -4.58 16 2 C 0.16 6.54 2.21 44.99 0.10 6.64 16 3 H 0.06 2.49 6.48 -2.39 -0.02 2.47 16 4 C 0.02 1.17 4.52 29.85 0.13 1.31 16 5 C -0.52 -29.24 8.84 25.60 0.23 -29.01 16 6 H 0.05 2.82 7.74 -2.91 -0.02 2.80 16 7 C 0.01 0.33 5.46 84.66 0.46 0.80 16 8 N -0.93 -55.57 13.29 21.45 0.28 -55.28 16 9 Si 0.95 44.88 29.54 68.60 2.03 46.91 16 10 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 11 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 12 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 13 N -0.72 -28.32 4.83 -318.64 -1.54 -29.86 16 14 C 0.21 7.61 6.61 38.31 0.25 7.86 16 15 C -0.23 -7.78 8.80 22.34 0.20 -7.58 16 16 C -0.08 -2.14 10.04 22.18 0.22 -1.92 16 17 C -0.20 -5.20 9.60 22.38 0.21 -4.99 16 18 C -0.04 -1.07 5.74 -19.87 -0.11 -1.18 16 19 C -0.18 -5.64 5.75 -19.73 -0.11 -5.75 16 20 C -0.07 -2.12 4.87 29.74 0.14 -1.97 16 21 C -0.11 -2.42 5.98 30.62 0.18 -2.24 16 22 C -0.12 -2.26 5.98 30.62 0.18 -2.08 16 23 C -0.08 -1.51 5.67 29.74 0.17 -1.34 16 24 H 0.06 1.89 7.63 -2.39 -0.02 1.87 16 25 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 27 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 29 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 30 H 0.39 15.77 6.64 -92.71 -0.62 15.15 16 31 H 0.11 3.86 6.04 -2.91 -0.02 3.84 16 32 H 0.14 3.06 8.06 -2.91 -0.02 3.04 16 33 H 0.14 2.73 8.05 -2.91 -0.02 2.70 16 34 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.06 1.73 7.00 -2.39 -0.02 1.71 16 36 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.07 1.42 8.10 -2.39 -0.02 1.40 16 38 H 0.05 1.17 8.10 -2.39 -0.02 1.15 16 39 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.09 1.45 8.13 -2.38 -0.02 1.43 16 41 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -62.55 323.84 4.09 -58.46 By element: Atomic # 1 Polarization: 25.43 SS G_CDS: 0.38 Total: 25.81 kcal Atomic # 6 Polarization: -48.97 SS G_CDS: 2.94 Total: -46.04 kcal Atomic # 7 Polarization: -83.89 SS G_CDS: -1.25 Total: -85.14 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -62.55 4.09 -58.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695842674.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.111 kcal (2) G-P(sol) polarization free energy of solvation -62.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds