Wall clock time and date at job start Mon Mar 30 2020 06:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.53000 * 109.47060 * 120.00319 * 2 1 3 5 5 C 1.50703 * 109.46801 * 184.99876 * 4 2 1 6 6 H 1.07998 * 120.00413 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99680 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00285 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99651 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47312 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47105 * 120.00272 * 9 7 5 12 12 H 1.48501 * 109.47040 * 239.99861 * 9 7 5 13 13 N 1.46896 * 109.46848 * 240.00028 * 2 1 3 14 14 C 1.46901 * 110.99913 * 85.00348 * 13 2 1 15 15 H 1.09002 * 109.67815 * 325.50748 * 14 13 2 16 16 C 1.53329 * 109.68171 * 204.99792 * 14 13 2 17 17 C 1.52733 * 108.38790 * 170.40393 * 16 14 13 18 18 C 1.50633 * 110.59042 * 51.10241 * 17 16 14 19 19 C 1.38905 * 117.75811 * 162.27425 * 18 17 16 20 20 C 1.37926 * 120.54640 * 179.76287 * 19 18 17 21 21 C 1.38262 * 119.77344 * 359.95773 * 20 19 18 22 22 C 1.37931 * 119.77352 * 0.12426 * 21 20 19 23 23 C 1.37661 * 122.55848 * 342.22360 * 18 17 16 24 24 C 1.50629 * 122.56772 * 0.72945 * 23 18 17 25 25 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 26 26 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47069 * 304.99600 * 4 2 1 29 29 H 1.08991 * 109.47625 * 64.99919 * 4 2 1 30 30 H 0.96998 * 119.99928 * 179.97438 * 8 7 5 31 31 H 1.00896 * 111.00728 * 321.04492 * 13 2 1 32 32 H 1.09002 * 109.68131 * 290.12797 * 16 14 13 33 33 H 1.09005 * 109.67951 * 50.68103 * 16 14 13 34 34 H 1.09002 * 109.25215 * 171.38981 * 17 16 14 35 35 H 1.09004 * 109.25400 * 290.81759 * 17 16 14 36 36 H 1.08004 * 119.72440 * 359.78287 * 19 18 17 37 37 H 1.08003 * 120.11423 * 179.97438 * 20 19 18 38 38 H 1.08008 * 120.11625 * 180.13751 * 21 20 19 39 39 H 1.07994 * 119.73108 * 180.02562 * 22 21 20 40 40 H 1.09001 * 109.25621 * 221.92611 * 24 23 18 41 41 H 1.09005 * 109.25401 * 102.49766 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6150 1.3126 6 1 4.0789 -0.0855 0.5396 7 6 4.2303 -1.1928 2.3582 8 7 3.5763 -1.8362 3.3004 9 14 6.0920 -1.0603 2.4372 10 1 6.5836 -0.2899 1.2667 11 1 6.4861 -0.3641 3.6883 12 1 6.6862 -2.4211 2.4198 13 7 2.0196 -0.6925 -1.1994 14 6 2.0824 0.2226 -2.3468 15 1 1.2641 0.9404 -2.2891 16 6 1.9771 -0.5765 -3.6511 17 6 1.8036 0.4074 -4.8064 18 6 2.8637 1.4763 -4.7556 19 6 3.0906 2.2176 -5.9081 20 6 4.0443 3.2139 -5.9244 21 6 4.7805 3.4782 -4.7843 22 6 4.5580 2.7421 -3.6393 23 6 3.6000 1.7362 -3.6219 24 6 3.4183 0.9629 -2.3421 25 1 -0.3634 0.5137 0.8900 26 1 -0.3635 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.6054 -0.2618 2.1370 29 1 1.7516 -1.7715 1.2056 30 1 4.0607 -2.2430 4.0358 31 1 1.4495 -1.4979 -1.4101 32 1 2.8862 -1.1595 -3.7989 33 1 1.1162 -1.2435 -3.6045 34 1 1.8805 -0.1306 -5.7513 35 1 0.8203 0.8728 -4.7375 36 1 2.5152 2.0125 -6.7988 37 1 4.2153 3.7858 -6.8245 38 1 5.5272 4.2586 -4.7902 39 1 5.1332 2.9494 -2.7491 40 1 3.4440 1.6527 -1.4985 41 1 4.2288 0.2411 -2.2401 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695843807.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:30 Heat of formation + Delta-G solvation = -0.236883 kcal Electronic energy + Delta-G solvation = -19314.816888 eV Core-core repulsion = 16579.015039 eV Total energy + Delta-G solvation = -2735.801849 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.96984 -37.34199 -34.87249 -32.62351 -32.19875 -30.56451 -28.97970 -27.37605 -26.95602 -23.56365 -22.92761 -22.05036 -21.76777 -19.57024 -19.06439 -16.49267 -16.09724 -15.61400 -15.36020 -14.62721 -14.45345 -14.12267 -14.01605 -13.34657 -13.17278 -12.98857 -12.81872 -12.43984 -12.21917 -12.01789 -11.75505 -11.53510 -11.34907 -11.30522 -11.06512 -10.76574 -10.67568 -10.47458 -10.24850 -10.16345 -9.93058 -9.20606 -8.92614 -8.68552 -8.42571 -8.21982 -7.53398 -5.84199 -3.81238 1.42647 1.46156 3.40281 3.47760 3.52424 3.82064 4.58030 4.60066 4.70573 4.92384 5.03334 5.06271 5.23243 5.32877 5.34775 5.48111 5.53437 5.66249 5.69524 5.74961 5.81546 5.88712 5.94425 6.02126 6.05539 6.11851 6.19658 6.21635 6.36359 6.50651 6.54323 6.57344 6.65424 6.67803 6.84356 7.08266 7.11569 7.62450 7.74384 8.07769 8.11304 8.23171 8.64873 9.24342 9.79850 11.28124 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.020402 B = 0.005520 C = 0.004639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.059415 B = 5071.610372 C = 6034.622561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.089 3.911 3 H 0.063 0.937 4 C 0.033 3.967 5 C -0.484 4.484 6 H 0.059 0.941 7 C 0.049 3.951 8 N -0.905 5.905 9 Si 0.887 3.113 10 H -0.274 1.274 11 H -0.288 1.288 12 H -0.287 1.287 13 N -0.660 5.660 14 C 0.092 3.908 15 H 0.038 0.962 16 C -0.120 4.120 17 C -0.076 4.076 18 C -0.081 4.081 19 C -0.123 4.123 20 C -0.132 4.132 21 C -0.124 4.124 22 C -0.121 4.121 23 C -0.062 4.062 24 C -0.073 4.073 25 H 0.055 0.945 26 H 0.036 0.964 27 H 0.050 0.950 28 H 0.016 0.984 29 H 0.016 0.984 30 H 0.256 0.744 31 H 0.332 0.668 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.118 0.882 39 H 0.122 0.878 40 H 0.075 0.925 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.192 7.321 -17.482 19.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.020 4.020 3 H 0.082 0.918 4 C -0.005 4.005 5 C -0.523 4.523 6 H 0.078 0.922 7 C -0.150 4.150 8 N -0.546 5.546 9 Si 0.716 3.284 10 H -0.198 1.198 11 H -0.215 1.215 12 H -0.214 1.214 13 N -0.291 5.291 14 C -0.019 4.019 15 H 0.056 0.944 16 C -0.158 4.158 17 C -0.114 4.114 18 C -0.081 4.081 19 C -0.141 4.141 20 C -0.150 4.150 21 C -0.142 4.142 22 C -0.139 4.139 23 C -0.062 4.062 24 C -0.110 4.110 25 H 0.074 0.926 26 H 0.055 0.945 27 H 0.069 0.931 28 H 0.034 0.966 29 H 0.035 0.965 30 H 0.065 0.935 31 H 0.151 0.849 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.134 0.866 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.140 0.860 40 H 0.094 0.906 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.495 7.305 -17.150 18.807 hybrid contribution 0.157 0.187 -0.080 0.257 sum -2.337 7.491 -17.231 18.934 Atomic orbital electron populations 1.22559 0.99664 1.01126 1.00533 1.21822 0.89757 0.98119 0.92326 0.91849 1.19114 0.96265 0.95364 0.89726 1.21190 0.91885 1.32550 1.06643 0.92248 1.25003 0.97855 0.96036 0.96107 1.69973 1.35001 1.37236 1.12402 0.86613 0.86684 0.77546 0.77578 1.19846 1.21489 1.21350 1.60517 1.57876 1.08348 1.02317 1.21387 0.96001 0.94232 0.90243 0.94434 1.21747 1.02542 0.97514 0.94019 1.20442 0.96902 0.94832 0.99207 1.19640 0.97764 0.97586 0.93086 1.21101 0.98750 0.96623 0.97629 1.20978 0.97209 0.98568 0.98200 1.21036 0.99935 0.99918 0.93344 1.21244 0.98207 0.95961 0.98468 1.19866 0.95131 0.95895 0.95316 1.20532 0.98900 0.98516 0.93061 0.92574 0.94479 0.93058 0.96595 0.96540 0.93466 0.84915 0.90819 0.91666 0.90969 0.91006 0.86589 0.86547 0.86415 0.86040 0.90610 0.89230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.02 9.15 37.16 0.34 -2.68 16 2 C 0.09 1.78 2.35 -67.72 -0.16 1.62 16 3 H 0.06 1.31 7.28 -51.93 -0.38 0.93 16 4 C 0.03 0.83 4.65 -27.88 -0.13 0.70 16 5 C -0.48 -13.56 8.84 -34.44 -0.30 -13.86 16 6 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 7 C 0.05 1.42 5.46 -17.82 -0.10 1.32 16 8 N -0.90 -27.55 13.29 55.43 0.74 -26.82 16 9 Si 0.89 22.20 29.54 -169.99 -5.02 17.18 16 10 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 12 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 13 N -0.66 -12.01 5.78 -99.71 -0.58 -12.58 16 14 C 0.09 1.40 2.31 -67.68 -0.16 1.25 16 15 H 0.04 0.59 7.09 -51.93 -0.37 0.22 16 16 C -0.12 -1.53 5.36 -26.70 -0.14 -1.68 16 17 C -0.08 -0.86 5.67 -28.05 -0.16 -1.02 16 18 C -0.08 -1.04 5.74 -104.62 -0.60 -1.64 16 19 C -0.12 -1.41 9.61 -39.45 -0.38 -1.79 16 20 C -0.13 -1.46 10.05 -39.69 -0.40 -1.86 16 21 C -0.12 -1.46 10.05 -39.69 -0.40 -1.86 16 22 C -0.12 -1.63 9.61 -39.44 -0.38 -2.01 16 23 C -0.06 -0.88 5.74 -104.61 -0.60 -1.48 16 24 C -0.07 -1.17 5.14 -28.06 -0.14 -1.31 16 25 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 26 H 0.04 0.55 7.44 -51.93 -0.39 0.16 16 27 H 0.05 0.84 8.13 -51.93 -0.42 0.41 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.33 5.63 7.98 -39.29 -0.31 5.32 16 32 H 0.07 1.00 8.10 -51.93 -0.42 0.58 16 33 H 0.06 0.75 7.94 -51.93 -0.41 0.34 16 34 H 0.07 0.70 8.12 -51.93 -0.42 0.28 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.12 1.07 8.05 -52.48 -0.42 0.65 16 37 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 38 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 39 H 0.12 1.55 8.05 -52.49 -0.42 1.13 16 40 H 0.08 1.30 7.62 -51.93 -0.40 0.91 16 41 H 0.09 1.59 8.14 -51.93 -0.42 1.16 16 LS Contribution 328.33 15.07 4.95 4.95 Total: -1.00 -30.38 328.33 -10.49 -40.86 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -6.86 Total: 2.71 kcal Atomic # 6 Polarization: -22.59 SS G_CDS: -3.71 Total: -26.30 kcal Atomic # 7 Polarization: -39.56 SS G_CDS: 0.16 Total: -39.40 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.38 -10.49 -40.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695843807.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.627 kcal (2) G-P(sol) polarization free energy of solvation -30.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds