Wall clock time and date at job start Mon Mar 30 2020 06:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.53000 * 109.47060 * 120.00319 * 2 1 3 5 5 C 1.50703 * 109.46801 * 184.99876 * 4 2 1 6 6 H 1.07998 * 120.00413 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99680 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00285 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99651 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47312 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47105 * 120.00272 * 9 7 5 12 12 H 1.48501 * 109.47040 * 239.99861 * 9 7 5 13 13 N 1.46896 * 109.46848 * 240.00028 * 2 1 3 14 14 C 1.46901 * 110.99913 * 85.00348 * 13 2 1 15 15 H 1.09002 * 109.67815 * 325.50748 * 14 13 2 16 16 C 1.53329 * 109.68171 * 204.99792 * 14 13 2 17 17 C 1.52733 * 108.38790 * 170.40393 * 16 14 13 18 18 C 1.50633 * 110.59042 * 51.10241 * 17 16 14 19 19 C 1.38905 * 117.75811 * 162.27425 * 18 17 16 20 20 C 1.37926 * 120.54640 * 179.76287 * 19 18 17 21 21 C 1.38262 * 119.77344 * 359.95773 * 20 19 18 22 22 C 1.37931 * 119.77352 * 0.12426 * 21 20 19 23 23 C 1.37661 * 122.55848 * 342.22360 * 18 17 16 24 24 C 1.50629 * 122.56772 * 0.72945 * 23 18 17 25 25 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 26 26 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47069 * 304.99600 * 4 2 1 29 29 H 1.08991 * 109.47625 * 64.99919 * 4 2 1 30 30 H 0.96998 * 119.99928 * 179.97438 * 8 7 5 31 31 H 1.00896 * 111.00728 * 321.04492 * 13 2 1 32 32 H 1.09002 * 109.68131 * 290.12797 * 16 14 13 33 33 H 1.09005 * 109.67951 * 50.68103 * 16 14 13 34 34 H 1.09002 * 109.25215 * 171.38981 * 17 16 14 35 35 H 1.09004 * 109.25400 * 290.81759 * 17 16 14 36 36 H 1.08004 * 119.72440 * 359.78287 * 19 18 17 37 37 H 1.08003 * 120.11423 * 179.97438 * 20 19 18 38 38 H 1.08008 * 120.11625 * 180.13751 * 21 20 19 39 39 H 1.07994 * 119.73108 * 180.02562 * 22 21 20 40 40 H 1.09001 * 109.25621 * 221.92611 * 24 23 18 41 41 H 1.09005 * 109.25401 * 102.49766 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6150 1.3126 6 1 4.0789 -0.0855 0.5396 7 6 4.2303 -1.1928 2.3582 8 7 3.5763 -1.8362 3.3004 9 14 6.0920 -1.0603 2.4372 10 1 6.5836 -0.2899 1.2667 11 1 6.4861 -0.3641 3.6883 12 1 6.6862 -2.4211 2.4198 13 7 2.0196 -0.6925 -1.1994 14 6 2.0824 0.2226 -2.3468 15 1 1.2641 0.9404 -2.2891 16 6 1.9771 -0.5765 -3.6511 17 6 1.8036 0.4074 -4.8064 18 6 2.8637 1.4763 -4.7556 19 6 3.0906 2.2176 -5.9081 20 6 4.0443 3.2139 -5.9244 21 6 4.7805 3.4782 -4.7843 22 6 4.5580 2.7421 -3.6393 23 6 3.6000 1.7362 -3.6219 24 6 3.4183 0.9629 -2.3421 25 1 -0.3634 0.5137 0.8900 26 1 -0.3635 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.6054 -0.2618 2.1370 29 1 1.7516 -1.7715 1.2056 30 1 4.0607 -2.2430 4.0358 31 1 1.4495 -1.4979 -1.4101 32 1 2.8862 -1.1595 -3.7989 33 1 1.1162 -1.2435 -3.6045 34 1 1.8805 -0.1306 -5.7513 35 1 0.8203 0.8728 -4.7375 36 1 2.5152 2.0125 -6.7988 37 1 4.2153 3.7858 -6.8245 38 1 5.5272 4.2586 -4.7902 39 1 5.1332 2.9494 -2.7491 40 1 3.4440 1.6527 -1.4985 41 1 4.2288 0.2411 -2.2401 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695843807.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:29 Heat of formation + Delta-G solvation = -16.780183 kcal Electronic energy + Delta-G solvation = -19315.534259 eV Core-core repulsion = 16579.015039 eV Total energy + Delta-G solvation = -2736.519220 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.98437 -38.66493 -36.23029 -34.53490 -33.35919 -31.88070 -30.04050 -29.22908 -28.24869 -25.15395 -24.37069 -23.01355 -22.91524 -21.22226 -20.17121 -18.38894 -17.37986 -16.78477 -16.56002 -16.38756 -15.62709 -15.55942 -15.13199 -14.58427 -14.49508 -14.35563 -13.95915 -13.77476 -13.64885 -13.31077 -13.22157 -13.16398 -12.85326 -12.59553 -12.40202 -12.36826 -12.19197 -11.99103 -11.75343 -11.47605 -11.23540 -11.07405 -11.02775 -10.48008 -9.62012 -9.40289 -8.99215 -8.08892 -6.12720 0.50342 0.50741 1.39409 1.40555 1.53161 2.47207 2.88412 3.21497 3.33895 3.72919 3.90064 4.09631 4.14351 4.21436 4.24376 4.32584 4.36445 4.46659 4.51359 4.58129 4.62737 4.71417 4.78953 4.89088 4.98939 5.04003 5.09404 5.11919 5.17890 5.23489 5.26702 5.34636 5.44517 5.54104 5.63702 5.65475 5.72653 5.83689 5.92002 6.18588 6.36916 6.53332 6.79832 7.01547 7.52557 9.03636 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.020402 B = 0.005520 C = 0.004639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.059415 B = 5071.610372 C = 6034.622561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.101 3.899 3 H 0.052 0.948 4 C 0.038 3.962 5 C -0.493 4.493 6 H 0.056 0.944 7 C -0.006 4.006 8 N -0.941 5.941 9 Si 0.953 3.047 10 H -0.267 1.267 11 H -0.282 1.282 12 H -0.283 1.283 13 N -0.677 5.677 14 C 0.096 3.904 15 H 0.041 0.959 16 C -0.114 4.114 17 C -0.072 4.072 18 C -0.090 4.090 19 C -0.124 4.124 20 C -0.129 4.129 21 C -0.129 4.129 22 C -0.141 4.141 23 C -0.086 4.086 24 C -0.065 4.065 25 H 0.053 0.947 26 H 0.063 0.937 27 H 0.055 0.945 28 H -0.010 1.010 29 H -0.008 1.008 30 H 0.258 0.742 31 H 0.340 0.660 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.145 0.855 37 H 0.147 0.853 38 H 0.138 0.862 39 H 0.114 0.886 40 H 0.050 0.950 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.416 8.139 -20.419 22.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.009 4.009 3 H 0.070 0.930 4 C 0.000 4.000 5 C -0.531 4.531 6 H 0.074 0.926 7 C -0.202 4.202 8 N -0.584 5.584 9 Si 0.779 3.221 10 H -0.192 1.192 11 H -0.208 1.208 12 H -0.209 1.209 13 N -0.308 5.308 14 C -0.013 4.013 15 H 0.059 0.941 16 C -0.152 4.152 17 C -0.109 4.109 18 C -0.090 4.090 19 C -0.142 4.142 20 C -0.146 4.146 21 C -0.147 4.147 22 C -0.159 4.159 23 C -0.087 4.087 24 C -0.103 4.103 25 H 0.072 0.928 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.008 0.992 29 H 0.010 0.990 30 H 0.067 0.933 31 H 0.159 0.841 32 H 0.080 0.920 33 H 0.101 0.899 34 H 0.114 0.886 35 H 0.103 0.897 36 H 0.163 0.837 37 H 0.165 0.835 38 H 0.156 0.844 39 H 0.132 0.868 40 H 0.069 0.931 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.721 8.129 -20.102 21.854 hybrid contribution 0.244 -0.033 0.804 0.841 sum -2.477 8.096 -19.299 21.074 Atomic orbital electron populations 1.22408 0.96761 1.01867 1.01751 1.21448 0.91990 0.96561 0.90919 0.92975 1.18997 0.95125 0.94227 0.91622 1.21508 0.93379 1.31919 1.06319 0.92608 1.25829 1.02642 0.95848 0.95868 1.70096 1.36871 1.38303 1.13105 0.85576 0.81021 0.77670 0.77824 1.19169 1.20791 1.20867 1.60332 1.58360 1.09291 1.02862 1.21386 0.95438 0.94046 0.90458 0.94070 1.21694 1.02735 0.97734 0.93017 1.20473 0.96944 0.94139 0.99339 1.19894 0.97838 0.98267 0.92967 1.21450 0.98807 0.96040 0.97919 1.21395 0.96185 0.98237 0.98817 1.21318 1.00450 0.99973 0.92940 1.21355 0.98566 0.96705 0.99290 1.19780 0.96919 0.96846 0.95140 1.20368 0.98564 0.97667 0.93721 0.92753 0.91805 0.92550 0.99206 0.98961 0.93345 0.84083 0.92009 0.89925 0.88581 0.89663 0.83716 0.83534 0.84379 0.86796 0.93101 0.91990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.55 9.15 71.98 0.66 -4.89 16 2 C 0.10 4.10 2.35 44.92 0.11 4.21 16 3 H 0.05 2.23 7.28 -2.39 -0.02 2.21 16 4 C 0.04 2.00 4.65 29.85 0.14 2.14 16 5 C -0.49 -28.51 8.84 25.60 0.23 -28.28 16 6 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 7 C -0.01 -0.37 5.46 84.66 0.46 0.09 16 8 N -0.94 -58.78 13.29 21.45 0.28 -58.50 16 9 Si 0.95 46.49 29.54 68.60 2.03 48.52 16 10 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 11 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 12 H -0.28 -13.53 7.11 99.48 0.71 -12.83 16 13 N -0.68 -24.88 5.78 -469.37 -2.71 -27.59 16 14 C 0.10 2.93 2.31 44.94 0.10 3.03 16 15 H 0.04 1.23 7.09 -2.39 -0.02 1.22 16 16 C -0.11 -2.71 5.36 30.62 0.16 -2.54 16 17 C -0.07 -1.39 5.67 29.74 0.17 -1.23 16 18 C -0.09 -2.12 5.74 -19.86 -0.11 -2.24 16 19 C -0.12 -2.42 9.61 22.36 0.21 -2.20 16 20 C -0.13 -2.41 10.05 22.20 0.22 -2.19 16 21 C -0.13 -2.80 10.05 22.20 0.22 -2.57 16 22 C -0.14 -3.81 9.61 22.36 0.21 -3.59 16 23 C -0.09 -2.47 5.74 -19.86 -0.11 -2.59 16 24 C -0.07 -2.18 5.14 29.74 0.15 -2.03 16 25 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.06 1.76 7.44 -2.39 -0.02 1.74 16 27 H 0.06 1.79 8.13 -2.39 -0.02 1.77 16 28 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 29 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 30 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 31 H 0.34 11.41 7.98 -89.70 -0.72 10.69 16 32 H 0.06 1.62 8.10 -2.39 -0.02 1.60 16 33 H 0.08 1.68 7.94 -2.38 -0.02 1.66 16 34 H 0.10 1.45 8.12 -2.39 -0.02 1.43 16 35 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 36 H 0.15 1.96 8.05 -2.91 -0.02 1.94 16 37 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 38 H 0.14 2.33 8.06 -2.91 -0.02 2.30 16 39 H 0.11 3.08 8.05 -2.91 -0.02 3.06 16 40 H 0.05 1.88 7.62 -2.39 -0.02 1.86 16 41 H 0.06 2.34 8.14 -2.38 -0.02 2.32 16 Total: -1.00 -67.22 328.33 2.70 -64.52 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: 0.27 Total: 17.94 kcal Atomic # 6 Polarization: -47.71 SS G_CDS: 2.83 Total: -44.89 kcal Atomic # 7 Polarization: -83.66 SS G_CDS: -2.43 Total: -86.09 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Total: -67.22 2.70 -64.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695843807.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.736 kcal (2) G-P(sol) polarization free energy of solvation -67.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds