Wall clock time and date at job start Mon Mar 30 2020 07:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46734 * 2 1 4 4 C 1.53004 * 109.47161 * 240.00641 * 2 1 3 5 5 C 1.50701 * 109.47211 * 175.00101 * 4 2 1 6 6 H 1.08002 * 119.99761 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99694 * 180.27574 * 5 4 2 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 4 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 4 10 10 H 1.48504 * 109.47209 * 89.99886 * 9 7 5 11 11 H 1.48501 * 109.47358 * 209.99377 * 9 7 5 12 12 H 1.48496 * 109.47341 * 329.99989 * 9 7 5 13 13 S 1.81399 * 109.47359 * 120.00032 * 2 1 3 14 14 O 1.42102 * 110.54189 * 56.62834 * 13 2 1 15 15 O 1.42101 * 110.54292 * 193.37431 * 13 2 1 16 16 C 1.76191 * 104.45040 * 305.00216 * 13 2 1 17 17 C 1.33392 * 125.20682 * 89.71857 * 16 13 2 18 18 C 1.38422 * 114.92192 * 179.85877 * 17 16 13 19 19 C 1.33387 * 114.92157 * 0.42919 * 18 17 16 20 20 S 1.75883 * 109.59447 * 359.77295 * 19 18 17 21 21 H 1.09000 * 109.46927 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.46944 * 299.99471 * 1 2 3 23 23 H 1.09001 * 109.47261 * 59.99525 * 1 2 3 24 24 H 1.09000 * 109.47211 * 54.99128 * 4 2 1 25 25 H 1.09007 * 109.46376 * 294.99670 * 4 2 1 26 26 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 27 27 H 1.07999 * 122.53606 * 0.02562 * 17 16 13 28 28 H 1.08002 * 122.53934 * 180.20094 * 18 17 16 29 29 H 1.07997 * 125.20215 * 179.78572 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5419 -0.6148 -1.3128 6 1 4.0789 -0.0854 -0.5396 7 6 4.2298 -1.1880 -2.3612 8 7 3.5759 -1.8323 -3.3029 9 14 6.0908 -1.0495 -2.4440 10 1 6.7049 -2.2018 -1.7365 11 1 6.5248 -1.0524 -3.8642 12 1 6.5224 0.2156 -1.7971 13 16 2.1347 -0.8551 1.4811 14 8 1.6108 -2.1746 1.5439 15 8 3.5214 -0.6078 1.6684 16 6 1.3586 -0.0152 2.8214 17 6 0.1757 -0.3355 3.3481 18 6 -0.2315 0.4676 4.3995 19 6 0.6166 1.4458 4.7207 20 16 2.0216 1.3787 3.6647 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 1.6052 -0.2616 -2.1370 25 1 1.7516 -1.7714 -1.2057 26 1 4.0598 -2.2352 -4.0406 27 1 -0.4181 -1.1608 2.9838 28 1 -1.1668 0.3162 4.9178 29 1 0.4640 2.1682 5.5088 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695891600.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:20 Heat of formation + Delta-G solvation = -48.273917 kcal Electronic energy + Delta-G solvation = -15560.442395 eV Core-core repulsion = 12895.536381 eV Total energy + Delta-G solvation = -2664.906014 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 260.033 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -37.82299 -36.32389 -35.21690 -34.86606 -32.22766 -29.89945 -27.57783 -24.37296 -23.55494 -21.36018 -19.88362 -18.86957 -17.50964 -16.53544 -16.08802 -15.75451 -14.77744 -14.72100 -14.32886 -13.55181 -13.01196 -12.92146 -12.69554 -12.48354 -12.31652 -11.87803 -11.62057 -11.35995 -11.27610 -11.07496 -10.93043 -10.70848 -10.68111 -10.54664 -9.87356 -9.51347 -9.26712 -9.08531 -8.56607 -8.44069 -6.10897 -4.17810 0.46629 0.80203 1.50317 1.83295 2.48407 3.34960 3.40926 3.47136 3.61645 4.43445 4.52543 4.80151 4.85496 5.20291 5.26876 5.32893 5.40496 5.49892 5.71899 5.86007 5.94142 6.09800 6.25481 6.41015 6.41453 7.35444 7.40109 7.87880 8.11957 8.92471 9.52099 10.99632 Molecular weight = 260.03amu Principal moments of inertia in cm(-1) A = 0.035090 B = 0.006834 C = 0.006284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.746256 B = 4096.044710 C = 4454.701996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.535 4.535 3 H 0.129 0.871 4 C 0.035 3.965 5 C -0.561 4.561 6 H 0.078 0.922 7 C 0.068 3.932 8 N -0.889 5.889 9 Si 0.895 3.105 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.268 1.268 13 S 2.518 3.482 14 O -0.940 6.940 15 O -0.927 6.927 16 C -0.763 4.763 17 C -0.013 4.013 18 C -0.161 4.161 19 C -0.192 4.192 20 S 0.208 5.792 21 H 0.070 0.930 22 H 0.056 0.944 23 H 0.076 0.924 24 H 0.048 0.952 25 H 0.035 0.965 26 H 0.265 0.735 27 H 0.154 0.846 28 H 0.146 0.854 29 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.553 7.146 13.063 17.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.648 4.648 3 H 0.147 0.853 4 C -0.003 4.003 5 C -0.599 4.599 6 H 0.096 0.904 7 C -0.135 4.135 8 N -0.526 5.526 9 Si 0.722 3.278 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.193 1.193 13 S 2.694 3.306 14 O -0.938 6.938 15 O -0.924 6.924 16 C -0.961 4.961 17 C -0.047 4.047 18 C -0.192 4.192 19 C -0.330 4.330 20 S 0.474 5.526 21 H 0.089 0.911 22 H 0.075 0.925 23 H 0.095 0.905 24 H 0.066 0.934 25 H 0.054 0.946 26 H 0.074 0.926 27 H 0.172 0.828 28 H 0.163 0.837 29 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -6.632 7.255 12.924 16.237 hybrid contribution -0.899 -0.066 0.166 0.916 sum -7.531 7.189 13.089 16.725 Atomic orbital electron populations 1.21703 0.91871 1.03384 1.03033 1.29969 1.04460 1.13180 1.17230 0.85318 1.19095 0.96650 0.95541 0.89029 1.21582 0.91230 1.36809 1.10261 0.90385 1.24963 0.99081 0.94321 0.95131 1.69956 1.36087 1.34879 1.11710 0.86527 0.84976 0.79282 0.77053 1.20107 1.21116 1.19283 1.05504 0.74667 0.75369 0.75044 1.93481 1.80885 1.33154 1.86273 1.93522 1.28560 1.85513 1.84816 1.36293 1.13489 1.18009 1.28289 1.20072 0.93058 0.98050 0.93503 1.20401 1.02014 0.96929 0.99876 1.26185 0.98642 1.03472 1.04660 1.84260 1.18976 1.23573 1.25802 0.91073 0.92499 0.90455 0.93371 0.94637 0.92586 0.82813 0.83673 0.81352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 8.98 37.16 0.33 -1.84 15 2 C -0.53 -10.42 2.87 -26.73 -0.08 -10.49 15 3 H 0.13 2.28 8.14 -51.92 -0.42 1.86 15 4 C 0.04 0.88 4.45 -27.88 -0.12 0.76 15 5 C -0.56 -15.78 8.36 -34.44 -0.29 -16.06 15 6 H 0.08 2.17 6.37 -52.49 -0.33 1.84 15 7 C 0.07 1.97 5.46 -17.82 -0.10 1.87 15 8 N -0.89 -26.28 13.29 55.43 0.74 -25.54 15 9 Si 0.89 22.18 29.54 -169.99 -5.02 17.16 15 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 15 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 15 12 H -0.27 -6.52 7.11 56.52 0.40 -6.11 15 13 S 2.52 51.68 4.46 -107.50 -0.48 51.20 15 14 O -0.94 -21.20 17.63 -57.54 -1.01 -22.21 15 15 O -0.93 -21.88 16.09 -57.54 -0.93 -22.80 15 16 C -0.76 -12.24 5.40 29.04 0.16 -12.08 15 17 C -0.01 -0.18 8.96 -41.21 -0.37 -0.55 15 18 C -0.16 -1.74 10.18 -41.21 -0.42 -2.16 15 19 C -0.19 -2.00 11.23 29.04 0.33 -1.67 15 20 S 0.21 2.84 23.14 -107.50 -2.49 0.35 15 21 H 0.07 1.08 8.14 -51.93 -0.42 0.65 15 22 H 0.06 0.71 6.66 -51.93 -0.35 0.36 15 23 H 0.08 1.10 8.14 -51.93 -0.42 0.68 15 24 H 0.05 1.22 8.14 -51.93 -0.42 0.80 15 25 H 0.04 0.94 8.14 -51.93 -0.42 0.52 15 26 H 0.26 7.35 8.31 -40.82 -0.34 7.01 15 27 H 0.15 1.86 8.02 -52.49 -0.42 1.44 15 28 H 0.15 1.12 8.06 -52.49 -0.42 0.70 15 29 H 0.17 1.17 8.06 -52.49 -0.42 0.75 15 LS Contribution 277.53 15.07 4.18 4.18 Total: -1.00 -33.49 277.53 -8.76 -42.25 By element: Atomic # 1 Polarization: 0.84 SS G_CDS: -3.19 Total: -2.36 kcal Atomic # 6 Polarization: -41.68 SS G_CDS: -0.56 Total: -42.23 kcal Atomic # 7 Polarization: -26.28 SS G_CDS: 0.74 Total: -25.54 kcal Atomic # 8 Polarization: -43.07 SS G_CDS: -1.94 Total: -45.01 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Atomic # 16 Polarization: 54.52 SS G_CDS: -2.97 Total: 51.56 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -33.49 -8.76 -42.25 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695891600.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.022 kcal (2) G-P(sol) polarization free energy of solvation -33.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds