Wall clock time and date at job start Mon Mar 30 2020 07:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46734 * 2 1 4 4 C 1.53004 * 109.47161 * 240.00641 * 2 1 3 5 5 C 1.50701 * 109.47211 * 175.00101 * 4 2 1 6 6 H 1.08002 * 119.99761 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99694 * 180.27574 * 5 4 2 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 4 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 4 10 10 H 1.48504 * 109.47209 * 89.99886 * 9 7 5 11 11 H 1.48501 * 109.47358 * 209.99377 * 9 7 5 12 12 H 1.48496 * 109.47341 * 329.99989 * 9 7 5 13 13 S 1.81399 * 109.47359 * 120.00032 * 2 1 3 14 14 O 1.42102 * 110.54189 * 56.62834 * 13 2 1 15 15 O 1.42101 * 110.54292 * 193.37431 * 13 2 1 16 16 C 1.76191 * 104.45040 * 305.00216 * 13 2 1 17 17 C 1.33392 * 125.20682 * 89.71857 * 16 13 2 18 18 C 1.38422 * 114.92192 * 179.85877 * 17 16 13 19 19 C 1.33387 * 114.92157 * 0.42919 * 18 17 16 20 20 S 1.75883 * 109.59447 * 359.77295 * 19 18 17 21 21 H 1.09000 * 109.46927 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.46944 * 299.99471 * 1 2 3 23 23 H 1.09001 * 109.47261 * 59.99525 * 1 2 3 24 24 H 1.09000 * 109.47211 * 54.99128 * 4 2 1 25 25 H 1.09007 * 109.46376 * 294.99670 * 4 2 1 26 26 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 27 27 H 1.07999 * 122.53606 * 0.02562 * 17 16 13 28 28 H 1.08002 * 122.53934 * 180.20094 * 18 17 16 29 29 H 1.07997 * 125.20215 * 179.78572 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5419 -0.6148 -1.3128 6 1 4.0789 -0.0854 -0.5396 7 6 4.2298 -1.1880 -2.3612 8 7 3.5759 -1.8323 -3.3029 9 14 6.0908 -1.0495 -2.4440 10 1 6.7049 -2.2018 -1.7365 11 1 6.5248 -1.0524 -3.8642 12 1 6.5224 0.2156 -1.7971 13 16 2.1347 -0.8551 1.4811 14 8 1.6108 -2.1746 1.5439 15 8 3.5214 -0.6078 1.6684 16 6 1.3586 -0.0152 2.8214 17 6 0.1757 -0.3355 3.3481 18 6 -0.2315 0.4676 4.3995 19 6 0.6166 1.4458 4.7207 20 16 2.0216 1.3787 3.6647 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 1.6052 -0.2616 -2.1370 25 1 1.7516 -1.7714 -1.2057 26 1 4.0598 -2.2352 -4.0406 27 1 -0.4181 -1.1608 2.9838 28 1 -1.1668 0.3162 4.9178 29 1 0.4640 2.1682 5.5088 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695891600.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:20 Heat of formation + Delta-G solvation = -72.069190 kcal Electronic energy + Delta-G solvation = -15561.474236 eV Core-core repulsion = 12895.536381 eV Total energy + Delta-G solvation = -2665.937854 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 260.033 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.82683 -37.96353 -36.91385 -36.64164 -34.21962 -30.98661 -29.36920 -25.42024 -25.39182 -23.05458 -21.03616 -20.02427 -18.97817 -18.66329 -17.57546 -17.03145 -16.59777 -16.33894 -15.58215 -15.04579 -14.39099 -14.27498 -14.04446 -13.82724 -13.61067 -13.48412 -13.33246 -13.06519 -12.97829 -12.72865 -12.56089 -12.38666 -12.32689 -11.80218 -11.72236 -11.32858 -11.06807 -10.62904 -10.23330 -9.57400 -8.30104 -6.42979 -0.86665 -0.41476 0.43591 0.90238 1.35798 1.39143 1.50109 1.57053 2.15603 2.36962 2.94537 3.05373 3.34482 3.87822 3.95942 4.05907 4.36322 4.40048 4.49368 4.78488 4.83581 4.92259 5.05521 5.17376 5.31826 5.33138 5.37289 5.69226 5.99215 6.74636 7.29909 8.81165 Molecular weight = 260.03amu Principal moments of inertia in cm(-1) A = 0.035090 B = 0.006834 C = 0.006284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.746256 B = 4096.044710 C = 4454.701996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.530 4.530 3 H 0.144 0.856 4 C 0.035 3.965 5 C -0.578 4.578 6 H 0.074 0.926 7 C 0.014 3.986 8 N -0.920 5.920 9 Si 0.949 3.051 10 H -0.276 1.276 11 H -0.270 1.270 12 H -0.261 1.261 13 S 2.515 3.485 14 O -0.977 6.977 15 O -0.974 6.974 16 C -0.794 4.794 17 C 0.002 3.998 18 C -0.165 4.165 19 C -0.155 4.155 20 S 0.177 5.823 21 H 0.069 0.931 22 H 0.092 0.908 23 H 0.090 0.910 24 H 0.038 0.962 25 H 0.009 0.991 26 H 0.269 0.731 27 H 0.164 0.836 28 H 0.187 0.813 29 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.036 8.854 15.204 20.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.644 4.644 3 H 0.162 0.838 4 C -0.003 4.003 5 C -0.616 4.616 6 H 0.092 0.908 7 C -0.186 4.186 8 N -0.559 5.559 9 Si 0.773 3.227 10 H -0.201 1.201 11 H -0.194 1.194 12 H -0.185 1.185 13 S 2.699 3.301 14 O -0.974 6.974 15 O -0.971 6.971 16 C -0.997 4.997 17 C -0.034 4.034 18 C -0.195 4.195 19 C -0.292 4.292 20 S 0.442 5.558 21 H 0.088 0.912 22 H 0.111 0.889 23 H 0.109 0.891 24 H 0.056 0.944 25 H 0.027 0.973 26 H 0.078 0.922 27 H 0.182 0.818 28 H 0.204 0.796 29 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -8.086 8.935 15.015 19.253 hybrid contribution -0.568 -0.536 -0.351 0.856 sum -8.654 8.399 14.664 18.986 Atomic orbital electron populations 1.21782 0.88508 1.04123 1.05447 1.29825 1.07422 1.12865 1.14255 0.83770 1.18913 0.95255 0.94646 0.91514 1.21989 0.93161 1.36456 1.10007 0.90752 1.25821 1.03574 0.94179 0.95013 1.70042 1.37772 1.35764 1.12343 0.85683 0.79820 0.79377 0.77856 1.20141 1.19444 1.18489 1.04802 0.74063 0.75211 0.76062 1.93426 1.81157 1.35678 1.87149 1.93454 1.31699 1.86155 1.85788 1.35302 1.15303 1.20543 1.28545 1.20509 0.91717 0.97850 0.93285 1.20746 1.03608 0.96115 0.99064 1.26709 0.95721 1.03275 1.03517 1.84404 1.21464 1.22780 1.27187 0.91247 0.88945 0.89113 0.94405 0.97270 0.92229 0.81848 0.79591 0.77055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.14 8.98 71.98 0.65 -3.50 15 2 C -0.53 -20.86 2.87 30.59 0.09 -20.77 15 3 H 0.14 5.14 8.14 -2.39 -0.02 5.12 15 4 C 0.04 1.82 4.45 29.85 0.13 1.95 15 5 C -0.58 -33.58 8.36 25.60 0.21 -33.37 15 6 H 0.07 4.28 6.37 -2.91 -0.02 4.26 15 7 C 0.01 0.83 5.46 84.65 0.46 1.30 15 8 N -0.92 -55.86 13.29 21.45 0.28 -55.57 15 9 Si 0.95 46.08 29.54 68.60 2.03 48.11 15 10 H -0.28 -13.32 7.11 99.48 0.71 -12.61 15 11 H -0.27 -12.31 7.11 99.48 0.71 -11.60 15 12 H -0.26 -12.23 7.11 99.48 0.71 -11.53 15 13 S 2.52 105.70 4.46 -56.49 -0.25 105.45 15 14 O -0.98 -45.57 17.63 -127.65 -2.25 -47.82 15 15 O -0.97 -47.89 16.09 -127.65 -2.05 -49.95 15 16 C -0.79 -24.42 5.40 66.72 0.36 -24.06 15 17 C 0.00 0.04 8.96 21.22 0.19 0.23 15 18 C -0.17 -2.71 10.18 21.22 0.22 -2.50 15 19 C -0.15 -2.44 11.23 66.72 0.75 -1.69 15 20 S 0.18 4.46 23.14 -56.49 -1.31 3.15 15 21 H 0.07 2.06 8.14 -2.39 -0.02 2.04 15 22 H 0.09 2.05 6.66 -2.38 -0.02 2.04 15 23 H 0.09 2.44 8.14 -2.39 -0.02 2.42 15 24 H 0.04 1.99 8.14 -2.39 -0.02 1.97 15 25 H 0.01 0.51 8.14 -2.38 -0.02 0.49 15 26 H 0.27 15.24 8.31 -92.71 -0.77 14.47 15 27 H 0.16 3.51 8.02 -2.91 -0.02 3.49 15 28 H 0.19 1.62 8.06 -2.91 -0.02 1.59 15 29 H 0.21 1.51 8.06 -2.91 -0.02 1.48 15 Total: -1.00 -76.06 277.53 0.65 -75.41 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: 1.15 Total: 3.63 kcal Atomic # 6 Polarization: -85.46 SS G_CDS: 3.06 Total: -82.40 kcal Atomic # 7 Polarization: -55.86 SS G_CDS: 0.28 Total: -55.57 kcal Atomic # 8 Polarization: -93.47 SS G_CDS: -4.30 Total: -97.77 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Atomic # 16 Polarization: 110.16 SS G_CDS: -1.56 Total: 108.60 kcal Total: -76.06 0.65 -75.41 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695891600.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.340 kcal (2) G-P(sol) polarization free energy of solvation -76.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds