Wall clock time and date at job start Mon Mar 30 2020 07:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46832 * 2 1 4 4 C 1.53002 * 109.47274 * 119.99680 * 2 1 3 5 5 C 1.50696 * 109.47061 * 185.00619 * 4 2 1 6 6 H 1.07994 * 120.00287 * 359.97438 * 5 4 2 7 7 C 1.37876 * 119.99763 * 180.02562 * 5 4 2 8 8 N 1.31522 * 120.00246 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99903 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47331 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47111 * 119.99750 * 9 7 5 12 12 H 1.48500 * 109.47042 * 239.99638 * 9 7 5 13 13 S 1.81399 * 109.47445 * 240.00020 * 2 1 3 14 14 O 1.42096 * 110.54122 * 171.62019 * 13 2 1 15 15 O 1.42097 * 110.54031 * 308.37189 * 13 2 1 16 16 C 1.76202 * 104.44776 * 59.99577 * 13 2 1 17 17 C 1.33394 * 125.19832 * 89.72303 * 16 13 2 18 18 C 1.38429 * 114.91573 * 179.85953 * 17 16 13 19 19 C 1.33385 * 114.92320 * 0.42382 * 18 17 16 20 20 S 1.75883 * 125.20426 * 270.02288 * 16 13 2 21 21 H 1.09004 * 109.46832 * 179.97438 * 1 2 3 22 22 H 1.08992 * 109.47199 * 299.99612 * 1 2 3 23 23 H 1.09001 * 109.46962 * 60.00164 * 1 2 3 24 24 H 1.09007 * 109.46999 * 305.00822 * 4 2 1 25 25 H 1.09001 * 109.47114 * 65.00016 * 4 2 1 26 26 H 0.96994 * 119.99826 * 180.02562 * 8 7 5 27 27 H 1.07997 * 122.54366 * 0.02562 * 17 16 13 28 28 H 1.08000 * 122.53575 * 180.20365 * 18 17 16 29 29 H 1.08004 * 125.20749 * 179.79113 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5419 -0.6147 1.3128 6 1 4.0790 -0.0859 0.5393 7 6 4.2305 -1.1932 2.3579 8 7 3.5765 -1.8376 3.2996 9 14 6.0922 -1.0618 2.4363 10 1 6.5839 -0.2924 1.2652 11 1 6.4871 -0.3662 3.6874 12 1 6.6857 -2.4230 2.4182 13 16 2.1348 -0.8551 -1.4811 14 8 3.5421 -0.7028 -1.6051 15 8 1.5223 -2.1313 -1.6050 16 6 1.4769 0.0751 -2.8252 17 6 2.0775 1.1137 -3.4083 18 6 1.3691 1.6874 -4.4501 19 6 0.1895 1.1204 -4.7071 20 16 -0.0752 -0.2191 -3.5983 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5137 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.6053 -0.2617 2.1370 25 1 1.7518 -1.7715 1.2057 26 1 4.0609 -2.2443 4.0350 27 1 3.0443 1.4776 -3.0934 28 1 1.7417 2.5325 -5.0099 29 1 -0.4980 1.4353 -5.4784 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695891605.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:22 Heat of formation + Delta-G solvation = -47.674102 kcal Electronic energy + Delta-G solvation = -15562.783629 eV Core-core repulsion = 12897.903625 eV Total energy + Delta-G solvation = -2664.880004 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 260.033 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -37.78688 -36.33694 -35.21410 -34.86471 -32.21158 -29.87360 -27.62068 -24.34511 -23.55229 -21.33937 -19.96113 -18.76740 -17.56786 -16.54101 -15.92872 -15.90086 -14.81510 -14.60535 -14.36188 -13.57310 -13.01266 -12.88931 -12.69162 -12.51302 -12.28827 -11.86888 -11.63517 -11.35088 -11.28784 -11.07102 -10.92379 -10.74292 -10.68376 -10.50959 -9.86978 -9.52413 -9.24387 -9.07079 -8.54531 -8.43836 -6.10107 -4.16393 0.46675 0.80470 1.49329 1.81712 2.49430 3.33061 3.41072 3.50548 3.61559 4.44350 4.52758 4.80266 4.85264 5.20800 5.27600 5.35519 5.40864 5.51021 5.73045 5.87380 5.94866 6.10292 6.26456 6.41195 6.42817 7.34582 7.39997 7.89435 8.12608 8.94178 9.53274 11.00554 Molecular weight = 260.03amu Principal moments of inertia in cm(-1) A = 0.036944 B = 0.006712 C = 0.006216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.715025 B = 4170.890992 C = 4503.259511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.534 4.534 3 H 0.129 0.871 4 C 0.035 3.965 5 C -0.557 4.557 6 H 0.080 0.920 7 C 0.067 3.933 8 N -0.890 5.890 9 Si 0.893 3.107 10 H -0.265 1.265 11 H -0.283 1.283 12 H -0.281 1.281 13 S 2.517 3.483 14 O -0.921 6.921 15 O -0.945 6.945 16 C -0.762 4.762 17 C -0.012 4.012 18 C -0.160 4.160 19 C -0.192 4.192 20 S 0.202 5.798 21 H 0.072 0.928 22 H 0.078 0.922 23 H 0.055 0.945 24 H 0.048 0.952 25 H 0.034 0.966 26 H 0.264 0.736 27 H 0.156 0.844 28 H 0.146 0.854 29 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.251 7.384 -13.108 17.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.648 4.648 3 H 0.147 0.853 4 C -0.004 4.004 5 C -0.595 4.595 6 H 0.098 0.902 7 C -0.136 4.136 8 N -0.528 5.528 9 Si 0.720 3.280 10 H -0.189 1.189 11 H -0.209 1.209 12 H -0.207 1.207 13 S 2.693 3.307 14 O -0.918 6.918 15 O -0.942 6.942 16 C -0.960 4.960 17 C -0.046 4.046 18 C -0.191 4.191 19 C -0.329 4.329 20 S 0.468 5.532 21 H 0.091 0.909 22 H 0.097 0.903 23 H 0.074 0.926 24 H 0.067 0.933 25 H 0.052 0.948 26 H 0.073 0.927 27 H 0.174 0.826 28 H 0.164 0.836 29 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -8.924 5.512 -12.897 16.624 hybrid contribution 1.650 1.868 -0.235 2.504 sum -7.274 7.380 -13.132 16.728 Atomic orbital electron populations 1.21724 0.91901 1.03533 1.03006 1.29961 1.04398 1.13230 1.17214 0.85292 1.19098 0.96752 0.95451 0.89059 1.21628 0.91131 1.36495 1.10226 0.90201 1.24974 0.99081 0.94381 0.95187 1.69970 1.35977 1.34968 1.11863 0.86487 0.85050 0.78293 0.78160 1.18885 1.20900 1.20653 1.05549 0.74995 0.75125 0.75041 1.93526 1.27039 1.85922 1.85304 1.93487 1.78399 1.36376 1.85928 1.36297 1.11297 1.19968 1.28432 1.20117 0.99854 0.91627 0.92960 1.20418 0.95269 1.03207 1.00227 1.26179 1.01663 1.00596 1.04476 1.84154 1.13868 1.29160 1.26059 0.90948 0.90345 0.92622 0.93347 0.94802 0.92675 0.82638 0.83635 0.81345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 9.00 37.16 0.33 -1.92 15 2 C -0.53 -10.38 2.83 -26.73 -0.08 -10.46 15 3 H 0.13 2.24 8.14 -51.92 -0.42 1.82 15 4 C 0.03 0.87 4.45 -27.88 -0.12 0.74 15 5 C -0.56 -15.58 8.26 -34.44 -0.28 -15.86 15 6 H 0.08 2.20 6.30 -52.49 -0.33 1.87 15 7 C 0.07 1.92 5.46 -17.82 -0.10 1.82 15 8 N -0.89 -26.32 13.29 55.43 0.74 -25.58 15 9 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 15 10 H -0.26 -6.49 7.11 56.52 0.40 -6.09 15 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 15 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 15 13 S 2.52 51.48 4.54 -107.50 -0.49 50.99 15 14 O -0.92 -21.59 15.69 -57.54 -0.90 -22.50 15 15 O -0.94 -21.28 17.66 -57.54 -1.02 -22.29 15 16 C -0.76 -12.27 5.49 29.04 0.16 -12.11 15 17 C -0.01 -0.17 9.78 -41.20 -0.40 -0.57 15 18 C -0.16 -1.77 10.18 -41.21 -0.42 -2.19 15 19 C -0.19 -1.99 11.23 29.04 0.33 -1.67 15 20 S 0.20 2.68 22.42 -107.50 -2.41 0.27 15 21 H 0.07 1.14 8.11 -51.93 -0.42 0.72 15 22 H 0.08 1.13 8.14 -51.93 -0.42 0.71 15 23 H 0.05 0.72 6.80 -51.93 -0.35 0.37 15 24 H 0.05 1.22 8.14 -51.92 -0.42 0.80 15 25 H 0.03 0.89 8.14 -51.93 -0.42 0.47 15 26 H 0.26 7.32 8.31 -40.82 -0.34 6.98 15 27 H 0.16 2.01 8.01 -52.49 -0.42 1.58 15 28 H 0.15 1.18 8.06 -52.49 -0.42 0.75 15 29 H 0.17 1.16 8.06 -52.48 -0.42 0.74 15 LS Contribution 277.34 15.07 4.18 4.18 Total: -1.00 -33.49 277.34 -8.70 -42.19 By element: Atomic # 1 Polarization: 1.09 SS G_CDS: -3.20 Total: -2.11 kcal Atomic # 6 Polarization: -41.63 SS G_CDS: -0.58 Total: -42.21 kcal Atomic # 7 Polarization: -26.32 SS G_CDS: 0.74 Total: -25.58 kcal Atomic # 8 Polarization: -42.87 SS G_CDS: -1.92 Total: -44.79 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Atomic # 16 Polarization: 54.16 SS G_CDS: -2.90 Total: 51.26 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -33.49 -8.70 -42.19 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695891605.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.483 kcal (2) G-P(sol) polarization free energy of solvation -33.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds