Wall clock time and date at job start Mon Mar 30 2020 07:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46832 * 2 1 4 4 C 1.53002 * 109.47274 * 119.99680 * 2 1 3 5 5 C 1.50696 * 109.47061 * 185.00619 * 4 2 1 6 6 H 1.07994 * 120.00287 * 359.97438 * 5 4 2 7 7 C 1.37876 * 119.99763 * 180.02562 * 5 4 2 8 8 N 1.31522 * 120.00246 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99903 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47331 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47111 * 119.99750 * 9 7 5 12 12 H 1.48500 * 109.47042 * 239.99638 * 9 7 5 13 13 S 1.81399 * 109.47445 * 240.00020 * 2 1 3 14 14 O 1.42096 * 110.54122 * 171.62019 * 13 2 1 15 15 O 1.42097 * 110.54031 * 308.37189 * 13 2 1 16 16 C 1.76202 * 104.44776 * 59.99577 * 13 2 1 17 17 C 1.33394 * 125.19832 * 89.72303 * 16 13 2 18 18 C 1.38429 * 114.91573 * 179.85953 * 17 16 13 19 19 C 1.33385 * 114.92320 * 0.42382 * 18 17 16 20 20 S 1.75883 * 125.20426 * 270.02288 * 16 13 2 21 21 H 1.09004 * 109.46832 * 179.97438 * 1 2 3 22 22 H 1.08992 * 109.47199 * 299.99612 * 1 2 3 23 23 H 1.09001 * 109.46962 * 60.00164 * 1 2 3 24 24 H 1.09007 * 109.46999 * 305.00822 * 4 2 1 25 25 H 1.09001 * 109.47114 * 65.00016 * 4 2 1 26 26 H 0.96994 * 119.99826 * 180.02562 * 8 7 5 27 27 H 1.07997 * 122.54366 * 0.02562 * 17 16 13 28 28 H 1.08000 * 122.53575 * 180.20365 * 18 17 16 29 29 H 1.08004 * 125.20749 * 179.79113 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5419 -0.6147 1.3128 6 1 4.0790 -0.0859 0.5393 7 6 4.2305 -1.1932 2.3579 8 7 3.5765 -1.8376 3.2996 9 14 6.0922 -1.0618 2.4363 10 1 6.5839 -0.2924 1.2652 11 1 6.4871 -0.3662 3.6874 12 1 6.6857 -2.4230 2.4182 13 16 2.1348 -0.8551 -1.4811 14 8 3.5421 -0.7028 -1.6051 15 8 1.5223 -2.1313 -1.6050 16 6 1.4769 0.0751 -2.8252 17 6 2.0775 1.1137 -3.4083 18 6 1.3691 1.6874 -4.4501 19 6 0.1895 1.1204 -4.7071 20 16 -0.0752 -0.2191 -3.5983 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5137 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.6053 -0.2617 2.1370 25 1 1.7518 -1.7715 1.2057 26 1 4.0609 -2.2443 4.0350 27 1 3.0443 1.4776 -3.0934 28 1 1.7417 2.5325 -5.0099 29 1 -0.4980 1.4353 -5.4784 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695891605.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:22 Heat of formation + Delta-G solvation = -71.333530 kcal Electronic energy + Delta-G solvation = -15563.809579 eV Core-core repulsion = 12897.903625 eV Total energy + Delta-G solvation = -2665.905954 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 260.033 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.79111 -37.98528 -36.91229 -36.64033 -34.20600 -30.95028 -29.42815 -25.50084 -25.29578 -23.05458 -21.11238 -19.89437 -19.07125 -18.66055 -17.50998 -17.04071 -16.66943 -16.25166 -15.59096 -15.06918 -14.39443 -14.27478 -14.02536 -13.84913 -13.67181 -13.44110 -13.34836 -13.05989 -12.97567 -12.72323 -12.55799 -12.37418 -12.34552 -11.80561 -11.72054 -11.31842 -11.06120 -10.61302 -10.24238 -9.54167 -8.28473 -6.40699 -0.86481 -0.42425 0.42974 0.88363 1.36267 1.39405 1.54161 1.56025 2.15261 2.38714 2.94697 3.06930 3.34386 3.87077 3.95487 4.05545 4.35035 4.39418 4.49072 4.75503 4.82049 4.91608 5.05264 5.15367 5.32167 5.32578 5.35771 5.71617 6.00481 6.77284 7.32013 8.83126 Molecular weight = 260.03amu Principal moments of inertia in cm(-1) A = 0.036944 B = 0.006712 C = 0.006216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.715025 B = 4170.890992 C = 4503.259511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.529 4.529 3 H 0.150 0.850 4 C 0.034 3.966 5 C -0.572 4.572 6 H 0.079 0.921 7 C 0.011 3.989 8 N -0.923 5.923 9 Si 0.950 3.050 10 H -0.263 1.263 11 H -0.266 1.266 12 H -0.278 1.278 13 S 2.515 3.485 14 O -0.966 6.966 15 O -0.981 6.981 16 C -0.795 4.795 17 C -0.002 4.002 18 C -0.168 4.168 19 C -0.155 4.155 20 S 0.189 5.811 21 H 0.065 0.935 22 H 0.093 0.907 23 H 0.088 0.912 24 H 0.038 0.962 25 H 0.006 0.994 26 H 0.268 0.732 27 H 0.159 0.841 28 H 0.184 0.816 29 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.963 9.667 -15.267 20.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.643 4.643 3 H 0.168 0.832 4 C -0.004 4.004 5 C -0.610 4.610 6 H 0.097 0.903 7 C -0.188 4.188 8 N -0.562 5.562 9 Si 0.774 3.226 10 H -0.187 1.187 11 H -0.191 1.191 12 H -0.203 1.203 13 S 2.698 3.302 14 O -0.963 6.963 15 O -0.978 6.978 16 C -0.998 4.998 17 C -0.037 4.037 18 C -0.198 4.198 19 C -0.293 4.293 20 S 0.454 5.546 21 H 0.084 0.916 22 H 0.112 0.888 23 H 0.107 0.893 24 H 0.056 0.944 25 H 0.024 0.976 26 H 0.077 0.923 27 H 0.176 0.824 28 H 0.201 0.799 29 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -9.614 7.763 -15.008 19.441 hybrid contribution 1.775 1.244 0.288 2.186 sum -7.840 9.006 -14.720 18.954 Atomic orbital electron populations 1.21794 0.88956 1.03957 1.05377 1.29820 1.06990 1.13212 1.14246 0.83229 1.18920 0.95476 0.94472 0.91531 1.22033 0.92943 1.36082 1.09962 0.90342 1.25851 1.03649 0.94262 0.95082 1.70063 1.37700 1.35933 1.12547 0.85610 0.79786 0.78472 0.78735 1.18710 1.19128 1.20324 1.04835 0.74209 0.75122 0.76045 1.93459 1.29861 1.86706 1.86317 1.93432 1.78617 1.39046 1.86746 1.35337 1.14035 1.21761 1.28672 1.20499 0.99891 0.90397 0.92944 1.20720 0.95168 1.04264 0.99606 1.26727 1.01668 0.97603 1.03267 1.84222 1.12114 1.31116 1.27143 0.91608 0.88801 0.89348 0.94390 0.97605 0.92331 0.82369 0.79885 0.76918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.37 9.00 71.98 0.65 -3.73 15 2 C -0.53 -20.75 2.83 30.60 0.09 -20.66 15 3 H 0.15 5.15 8.14 -2.39 -0.02 5.13 15 4 C 0.03 1.78 4.45 29.85 0.13 1.91 15 5 C -0.57 -32.93 8.26 25.60 0.21 -32.72 15 6 H 0.08 4.44 6.30 -2.91 -0.02 4.42 15 7 C 0.01 0.65 5.46 84.65 0.46 1.12 15 8 N -0.92 -56.04 13.29 21.45 0.28 -55.75 15 9 Si 0.95 45.80 29.54 68.60 2.03 47.83 15 10 H -0.26 -12.49 7.11 99.48 0.71 -11.78 15 11 H -0.27 -12.03 7.11 99.48 0.71 -11.33 15 12 H -0.28 -13.15 7.11 99.48 0.71 -12.44 15 13 S 2.51 105.35 4.54 -56.49 -0.26 105.09 15 14 O -0.97 -46.89 15.69 -127.65 -2.00 -48.89 15 15 O -0.98 -46.08 17.66 -127.65 -2.25 -48.33 15 16 C -0.79 -24.60 5.49 66.72 0.37 -24.23 15 17 C 0.00 -0.05 9.78 21.22 0.21 0.15 15 18 C -0.17 -2.92 10.18 21.22 0.22 -2.70 15 19 C -0.16 -2.43 11.23 66.72 0.75 -1.68 15 20 S 0.19 4.54 22.42 -56.49 -1.27 3.28 15 21 H 0.06 2.10 8.11 -2.38 -0.02 2.08 15 22 H 0.09 2.58 8.14 -2.39 -0.02 2.56 15 23 H 0.09 2.12 6.80 -2.39 -0.02 2.10 15 24 H 0.04 1.99 8.14 -2.38 -0.02 1.97 15 25 H 0.01 0.32 8.14 -2.39 -0.02 0.30 15 26 H 0.27 15.17 8.31 -92.71 -0.77 14.40 15 27 H 0.16 3.82 8.01 -2.91 -0.02 3.80 15 28 H 0.18 1.85 8.06 -2.91 -0.02 1.83 15 29 H 0.21 1.45 8.06 -2.91 -0.02 1.42 15 Total: -1.00 -75.61 277.34 0.76 -74.85 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: 1.15 Total: 4.47 kcal Atomic # 6 Polarization: -85.62 SS G_CDS: 3.08 Total: -82.54 kcal Atomic # 7 Polarization: -56.04 SS G_CDS: 0.28 Total: -55.75 kcal Atomic # 8 Polarization: -92.96 SS G_CDS: -4.26 Total: -97.22 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Atomic # 16 Polarization: 109.89 SS G_CDS: -1.52 Total: 108.37 kcal Total: -75.61 0.76 -74.85 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695891605.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.513 kcal (2) G-P(sol) polarization free energy of solvation -75.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds