Wall clock time and date at job start Mon Mar 30 2020 06:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99796 * 2 1 4 4 H 1.48498 * 109.47136 * 270.00392 * 3 2 1 5 5 H 1.48503 * 109.47098 * 30.00459 * 3 2 1 6 6 H 1.48504 * 109.46915 * 150.00313 * 3 2 1 7 7 C 1.37879 * 119.99907 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00229 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99824 * 179.97438 * 7 2 1 10 10 C 1.50695 * 109.47475 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99483 * 0.02562 * 10 9 7 12 12 C 1.46888 * 120.00110 * 180.27667 * 10 9 7 13 13 C 1.40177 * 120.19774 * 359.45376 * 12 10 9 14 14 F 1.35101 * 120.09580 * 359.97438 * 13 12 10 15 15 C 1.38173 * 119.80838 * 179.72094 * 13 12 10 16 16 C 1.38314 * 120.20650 * 0.54979 * 15 13 12 17 17 C 1.38579 * 120.40307 * 359.72608 * 16 15 13 18 18 F 1.35098 * 119.90674 * 179.97438 * 17 16 15 19 19 C 1.38202 * 120.18286 * 359.97438 * 17 16 15 20 20 Cl 1.73599 * 120.10419 * 180.02562 * 19 17 16 21 21 H 0.96997 * 120.00400 * 359.97438 * 1 2 3 22 22 H 1.09009 * 109.46601 * 59.99932 * 9 7 2 23 23 H 1.08998 * 109.47035 * 300.00439 * 9 7 2 24 24 H 1.08000 * 119.89692 * 180.25071 * 15 13 12 25 25 H 1.07998 * 119.79689 * 179.69652 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1941 -0.0011 10 6 4.0140 -2.6148 -0.0010 11 8 3.2258 -3.5367 -0.0010 12 6 5.4581 -2.8831 0.0046 13 6 6.3727 -1.8208 -0.0016 14 9 5.9288 -0.5448 -0.0134 15 6 7.7294 -2.0824 0.0096 16 6 8.1864 -3.3878 0.0155 17 6 7.2900 -4.4447 0.0159 18 9 7.7473 -5.7159 0.0212 19 6 5.9295 -4.2018 0.0110 20 17 4.8084 -5.5272 0.0123 21 1 -0.4850 0.8400 0.0004 22 1 3.8752 -0.6803 0.8889 23 1 3.8745 -0.6800 -0.8911 24 1 8.4352 -1.2650 0.0089 25 1 9.2482 -3.5847 0.0193 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705594546.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:45 Heat of formation + Delta-G solvation = -93.963799 kcal Electronic energy + Delta-G solvation = -16831.422219 eV Core-core repulsion = 13472.817756 eV Total energy + Delta-G solvation = -3358.604463 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 260.016 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.16735 -49.09050 -39.53739 -37.77706 -36.47868 -32.89765 -31.64870 -30.41975 -29.51003 -25.11952 -22.97231 -22.60731 -19.82335 -17.81513 -17.61824 -17.34550 -16.66216 -16.23593 -15.56808 -15.15574 -14.72411 -14.65697 -14.41291 -14.01788 -13.77445 -13.49616 -12.85743 -12.73537 -12.25108 -11.69841 -11.55057 -11.41350 -11.17639 -10.75233 -10.56049 -9.92314 -9.26327 -9.24843 -8.75973 -8.72852 -8.58979 -6.05542 -4.06079 0.29935 0.59667 1.91824 2.56295 3.27516 3.35816 3.36830 3.43508 3.70748 3.89235 4.22142 4.40944 4.46830 4.57362 4.98563 5.25806 5.31468 5.49089 5.56685 5.65776 6.26080 6.36192 6.65690 6.88717 7.57182 8.22987 8.51768 9.09506 9.52798 11.07199 Molecular weight = 260.02amu Principal moments of inertia in cm(-1) A = 0.029240 B = 0.007195 C = 0.005792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.351297 B = 3890.871177 C = 4833.047457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.072 3.928 3 Si 0.870 3.130 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.261 1.261 7 C -0.521 4.521 8 H 0.091 0.909 9 C -0.051 4.051 10 C 0.389 3.611 11 O -0.413 6.413 12 C -0.160 4.160 13 C 0.150 3.850 14 F -0.108 7.108 15 C -0.137 4.137 16 C -0.095 4.095 17 C 0.081 3.919 18 F -0.124 7.124 19 C -0.010 4.010 20 Cl -0.003 7.003 21 H 0.264 0.736 22 H 0.058 0.942 23 H 0.053 0.947 24 H 0.156 0.844 25 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.185 -5.053 0.053 19.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.130 4.130 3 Si 0.697 3.303 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.186 1.186 7 C -0.559 4.559 8 H 0.109 0.891 9 C -0.088 4.088 10 C 0.263 3.737 11 O -0.285 6.285 12 C -0.163 4.163 13 C 0.130 3.870 14 F -0.086 7.086 15 C -0.156 4.156 16 C -0.114 4.114 17 C 0.061 3.939 18 F -0.102 7.102 19 C -0.039 4.039 20 Cl 0.027 6.973 21 H 0.074 0.926 22 H 0.075 0.925 23 H 0.071 0.929 24 H 0.174 0.826 25 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 18.468 -5.559 0.056 19.286 hybrid contribution 0.437 0.908 -0.022 1.008 sum 18.905 -4.651 0.034 19.468 Atomic orbital electron populations 1.69896 1.06216 1.26920 1.50405 1.24950 0.94750 0.98797 0.94510 0.86933 0.80624 0.83979 0.78804 1.20024 1.21118 1.18584 1.21020 0.87854 0.95703 1.51342 0.89135 1.20142 0.99706 0.89779 0.99198 1.22731 0.84279 0.94103 0.72583 1.90528 1.57349 1.47248 1.33352 1.20997 0.99249 0.90428 1.05590 1.17724 0.91541 0.79105 0.98671 1.91643 1.89738 1.34531 1.92669 1.21048 0.93787 0.97772 1.03014 1.21051 1.00410 0.90477 0.99487 1.17263 0.90118 0.80241 1.06289 1.91551 1.88998 1.35744 1.93948 1.21090 0.89813 0.90791 1.02185 1.98447 1.60185 1.42928 1.95738 0.92561 0.92452 0.92891 0.82633 0.82641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.74 13.96 55.43 0.77 -26.97 15 2 C 0.07 2.09 5.47 -17.82 -0.10 1.99 15 3 Si 0.87 20.98 27.47 -169.99 -4.67 16.31 15 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 15 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 15 6 H -0.26 -5.90 6.54 56.52 0.37 -5.53 15 7 C -0.52 -15.10 9.48 -34.44 -0.33 -15.43 15 8 H 0.09 2.93 7.00 -52.49 -0.37 2.56 15 9 C -0.05 -1.21 2.72 -29.04 -0.08 -1.29 15 10 C 0.39 8.39 7.10 -30.81 -0.22 8.17 15 11 O -0.41 -9.93 13.08 5.55 0.07 -9.86 15 12 C -0.16 -2.70 5.88 -104.99 -0.62 -3.32 15 13 C 0.15 2.12 7.26 -38.88 -0.28 1.83 15 14 F -0.11 -1.70 13.76 2.25 0.03 -1.67 15 15 C -0.14 -1.35 10.01 -39.58 -0.40 -1.75 15 16 C -0.10 -0.88 10.01 -39.43 -0.39 -1.27 15 17 C 0.08 1.01 7.26 -39.47 -0.29 0.72 15 18 F -0.12 -1.53 16.83 2.25 0.04 -1.49 15 19 C -0.01 -0.16 6.36 -38.92 -0.25 -0.41 15 20 Cl 0.00 -0.05 25.69 -51.86 -1.33 -1.38 15 21 H 0.26 7.61 8.31 -40.82 -0.34 7.27 15 22 H 0.06 1.31 6.48 -51.92 -0.34 0.98 15 23 H 0.05 1.20 6.82 -51.93 -0.35 0.84 15 24 H 0.16 1.02 8.06 -52.49 -0.42 0.59 15 25 H 0.16 0.88 8.06 -52.49 -0.42 0.46 15 LS Contribution 247.80 15.07 3.73 3.73 Total: -1.00 -32.06 247.80 -5.37 -37.43 By element: Atomic # 1 Polarization: -4.29 SS G_CDS: -1.07 Total: -5.36 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: -2.95 Total: -10.75 kcal Atomic # 7 Polarization: -27.74 SS G_CDS: 0.77 Total: -26.97 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.07 Total: -9.86 kcal Atomic # 9 Polarization: -3.22 SS G_CDS: 0.07 Total: -3.16 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.67 Total: 16.31 kcal Atomic # 17 Polarization: -0.05 SS G_CDS: -1.33 Total: -1.38 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -32.06 -5.37 -37.43 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705594546.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.538 kcal (2) G-P(sol) polarization free energy of solvation -32.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds