Wall clock time and date at job start Mon Mar 30 2020 06:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99796 * 2 1 4 4 H 1.48498 * 109.47136 * 270.00392 * 3 2 1 5 5 H 1.48503 * 109.47098 * 30.00459 * 3 2 1 6 6 H 1.48504 * 109.46915 * 150.00313 * 3 2 1 7 7 C 1.37879 * 119.99907 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00229 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99824 * 179.97438 * 7 2 1 10 10 C 1.50695 * 109.47475 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99483 * 0.02562 * 10 9 7 12 12 C 1.46888 * 120.00110 * 180.27667 * 10 9 7 13 13 C 1.40177 * 120.19774 * 359.45376 * 12 10 9 14 14 F 1.35101 * 120.09580 * 359.97438 * 13 12 10 15 15 C 1.38173 * 119.80838 * 179.72094 * 13 12 10 16 16 C 1.38314 * 120.20650 * 0.54979 * 15 13 12 17 17 C 1.38579 * 120.40307 * 359.72608 * 16 15 13 18 18 F 1.35098 * 119.90674 * 179.97438 * 17 16 15 19 19 C 1.38202 * 120.18286 * 359.97438 * 17 16 15 20 20 Cl 1.73599 * 120.10419 * 180.02562 * 19 17 16 21 21 H 0.96997 * 120.00400 * 359.97438 * 1 2 3 22 22 H 1.09009 * 109.46601 * 59.99932 * 9 7 2 23 23 H 1.08998 * 109.47035 * 300.00439 * 9 7 2 24 24 H 1.08000 * 119.89692 * 180.25071 * 15 13 12 25 25 H 1.07998 * 119.79689 * 179.69652 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1941 -0.0011 10 6 4.0140 -2.6148 -0.0010 11 8 3.2258 -3.5367 -0.0010 12 6 5.4581 -2.8831 0.0046 13 6 6.3727 -1.8208 -0.0016 14 9 5.9288 -0.5448 -0.0134 15 6 7.7294 -2.0824 0.0096 16 6 8.1864 -3.3878 0.0155 17 6 7.2900 -4.4447 0.0159 18 9 7.7473 -5.7159 0.0212 19 6 5.9295 -4.2018 0.0110 20 17 4.8084 -5.5272 0.0123 21 1 -0.4850 0.8400 0.0004 22 1 3.8752 -0.6803 0.8889 23 1 3.8745 -0.6800 -0.8911 24 1 8.4352 -1.2650 0.0089 25 1 9.2482 -3.5847 0.0193 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705594546.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:45 Heat of formation + Delta-G solvation = -114.811885 kcal Electronic energy + Delta-G solvation = -16832.326260 eV Core-core repulsion = 13472.817756 eV Total energy + Delta-G solvation = -3359.508504 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 260.016 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -50.21051 -50.12225 -40.87417 -39.14734 -37.65550 -35.06296 -32.92898 -31.75736 -31.03405 -26.67448 -24.29756 -23.91148 -21.28607 -19.26393 -18.85979 -18.51962 -18.25950 -17.32612 -16.63054 -16.54431 -16.45520 -15.89148 -15.65674 -15.58663 -15.40183 -14.55395 -14.33088 -14.02579 -13.75786 -13.33468 -12.94148 -12.78033 -12.49128 -12.40286 -12.23384 -11.81718 -11.46982 -10.80830 -10.36819 -10.33193 -9.77455 -8.29334 -6.38039 -0.80475 -0.38066 0.78614 1.27984 1.38395 1.41260 1.53012 2.17753 2.36453 2.61089 2.88229 3.04182 3.09612 3.53409 3.60431 3.88070 4.35833 4.55377 4.62683 4.70570 4.81112 4.83787 4.99868 5.41922 5.51022 6.21741 6.64518 6.74311 7.25951 8.87803 Molecular weight = 260.02amu Principal moments of inertia in cm(-1) A = 0.029240 B = 0.007195 C = 0.005792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.351297 B = 3890.871177 C = 4833.047457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.007 3.993 3 Si 0.950 3.050 4 H -0.261 1.261 5 H -0.283 1.283 6 H -0.231 1.231 7 C -0.541 4.541 8 H 0.033 0.967 9 C -0.048 4.048 10 C 0.386 3.614 11 O -0.457 6.457 12 C -0.190 4.190 13 C 0.145 3.855 14 F -0.118 7.118 15 C -0.108 4.108 16 C -0.058 4.058 17 C 0.082 3.918 18 F -0.123 7.123 19 C -0.027 4.027 20 Cl -0.032 7.032 21 H 0.269 0.731 22 H 0.071 0.929 23 H 0.069 0.931 24 H 0.205 0.795 25 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.192 -3.202 0.069 24.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.190 4.190 3 Si 0.772 3.228 4 H -0.185 1.185 5 H -0.208 1.208 6 H -0.154 1.154 7 C -0.578 4.578 8 H 0.051 0.949 9 C -0.085 4.085 10 C 0.263 3.737 11 O -0.332 6.332 12 C -0.192 4.192 13 C 0.125 3.875 14 F -0.097 7.097 15 C -0.126 4.126 16 C -0.076 4.076 17 C 0.061 3.939 18 F -0.102 7.102 19 C -0.055 4.055 20 Cl -0.003 7.003 21 H 0.077 0.923 22 H 0.089 0.911 23 H 0.087 0.913 24 H 0.222 0.778 25 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 23.506 -3.722 0.071 23.799 hybrid contribution -1.055 0.245 -0.029 1.084 sum 22.451 -3.476 0.042 22.719 Atomic orbital electron populations 1.70082 1.08644 1.28425 1.51903 1.26065 0.95705 1.03699 0.93558 0.85672 0.80013 0.77333 0.79828 1.18524 1.20837 1.15364 1.21236 0.91036 0.93886 1.51671 0.94857 1.20073 0.95954 0.92157 1.00304 1.22784 0.86869 0.92721 0.71322 1.90515 1.59222 1.47824 1.35679 1.20430 0.96412 0.92284 1.10122 1.18002 0.92817 0.77763 0.98938 1.91604 1.90163 1.35072 1.92814 1.21562 0.92069 0.99405 0.99567 1.21678 1.02191 0.88825 0.94942 1.17475 0.89115 0.81245 1.06040 1.91563 1.88681 1.36024 1.93900 1.21227 0.90822 0.89537 1.03925 1.98432 1.61659 1.44143 1.96028 0.92263 0.91087 0.91282 0.77754 0.77372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.42 13.96 21.45 0.30 -61.12 15 2 C 0.01 0.39 5.47 84.65 0.46 0.86 15 3 Si 0.95 43.06 27.47 68.60 1.88 44.94 15 4 H -0.26 -11.18 7.11 99.48 0.71 -10.48 15 5 H -0.28 -12.62 7.11 99.48 0.71 -11.91 15 6 H -0.23 -9.26 6.54 99.48 0.65 -8.60 15 7 C -0.54 -32.89 9.48 25.60 0.24 -32.65 15 8 H 0.03 2.34 7.00 -2.92 -0.02 2.32 15 9 C -0.05 -2.29 2.72 29.10 0.08 -2.21 15 10 C 0.39 17.22 7.10 27.95 0.20 17.42 15 11 O -0.46 -23.64 13.08 -3.07 -0.04 -23.68 15 12 C -0.19 -6.26 5.88 -20.11 -0.12 -6.38 15 13 C 0.15 3.57 7.26 22.73 0.17 3.74 15 14 F -0.12 -3.30 13.76 44.97 0.62 -2.68 15 15 C -0.11 -1.42 10.01 22.27 0.22 -1.19 15 16 C -0.06 -0.69 10.01 22.37 0.22 -0.46 15 17 C 0.08 1.73 7.26 22.34 0.16 1.90 15 18 F -0.12 -2.67 16.83 44.97 0.76 -1.91 15 19 C -0.03 -0.80 6.36 22.70 0.14 -0.66 15 20 Cl -0.03 -1.12 25.69 -2.72 -0.07 -1.19 15 21 H 0.27 15.99 8.31 -92.71 -0.77 15.22 15 22 H 0.07 3.18 6.48 -2.38 -0.02 3.16 15 23 H 0.07 3.06 6.82 -2.39 -0.02 3.04 15 24 H 0.21 0.86 8.06 -2.91 -0.02 0.84 15 25 H 0.21 0.46 8.06 -2.91 -0.02 0.44 15 Total: -1.00 -77.69 247.80 6.43 -71.26 By element: Atomic # 1 Polarization: -7.17 SS G_CDS: 1.20 Total: -5.97 kcal Atomic # 6 Polarization: -21.42 SS G_CDS: 1.78 Total: -19.64 kcal Atomic # 7 Polarization: -61.42 SS G_CDS: 0.30 Total: -61.12 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: -0.04 Total: -23.68 kcal Atomic # 9 Polarization: -5.97 SS G_CDS: 1.38 Total: -4.59 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 1.88 Total: 44.94 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -0.07 Total: -1.19 kcal Total: -77.69 6.43 -71.26 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705594546.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.554 kcal (2) G-P(sol) polarization free energy of solvation -77.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds