Wall clock time and date at job start Mon Mar 30 2020 06:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46905 * 109.47129 * 2 1 4 4 C 1.46906 * 110.99688 * 282.37667 * 3 2 1 5 5 H 1.08990 * 109.47136 * 311.15438 * 4 3 2 6 6 C 1.50700 * 109.46995 * 71.15707 * 4 3 2 7 7 H 1.08001 * 120.00220 * 32.97007 * 6 4 3 8 8 C 1.37877 * 119.99635 * 212.96870 * 6 4 3 9 9 N 1.31507 * 120.00322 * 4.04787 * 8 6 4 10 10 Si 1.86805 * 119.99639 * 184.04178 * 8 6 4 11 11 H 1.48507 * 109.46789 * 180.02562 * 10 8 6 12 12 H 1.48498 * 109.46915 * 300.00028 * 10 8 6 13 13 H 1.48498 * 109.47344 * 60.00367 * 10 8 6 14 14 C 1.50705 * 109.46850 * 191.15348 * 4 3 2 15 15 C 1.38228 * 120.00132 * 311.41845 * 14 4 3 16 16 C 1.38236 * 119.99863 * 179.80854 * 15 14 4 17 17 C 1.38228 * 120.00302 * 0.40092 * 16 15 14 18 18 C 1.38240 * 119.99739 * 359.85027 * 17 16 15 19 19 C 1.38230 * 119.99827 * 131.69185 * 14 4 3 20 20 C 1.46899 * 111.00251 * 158.42224 * 3 2 1 21 21 C 1.53783 * 113.61080 * 37.08865 * 20 3 2 22 22 C 1.53784 * 87.07687 * 220.01749 * 21 20 3 23 23 C 1.53779 * 113.61350 * 299.59053 * 20 3 2 24 24 H 1.09003 * 109.47351 * 69.18396 * 1 2 3 25 25 H 1.09004 * 109.46942 * 189.18344 * 1 2 3 26 26 H 1.09004 * 109.47322 * 309.18173 * 1 2 3 27 27 H 1.08999 * 109.47489 * 239.99944 * 2 1 3 28 28 H 1.09002 * 109.47697 * 119.99639 * 2 1 3 29 29 H 0.97003 * 120.00002 * 354.50847 * 9 8 6 30 30 H 1.08008 * 120.00361 * 0.02562 * 15 14 4 31 31 H 1.08003 * 119.99843 * 180.23309 * 16 15 14 32 32 H 1.08000 * 120.00490 * 179.83019 * 17 16 15 33 33 H 1.07996 * 120.00354 * 179.97438 * 18 17 16 34 34 H 1.08008 * 120.00192 * 359.97438 * 19 14 4 35 35 H 1.09005 * 112.84743 * 168.38820 * 20 3 2 36 36 H 1.08994 * 113.61550 * 334.56080 * 21 20 3 37 37 H 1.09006 * 113.61684 * 105.47020 * 21 20 3 38 38 H 1.09008 * 113.61381 * 270.88045 * 22 21 20 39 39 H 1.08997 * 113.61354 * 139.98469 * 22 21 20 40 40 H 1.09001 * 113.61235 * 254.52237 * 23 20 3 41 41 H 1.08994 * 113.61465 * 25.34995 * 23 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.9179 1.9793 -1.3396 5 1 2.3459 1.2965 -2.0734 6 6 0.4688 2.2281 -1.6701 7 1 -0.2262 2.4916 -0.8866 8 6 0.0303 2.1194 -2.9727 9 7 0.8579 1.7214 -3.9141 10 14 -1.7394 2.5374 -3.4004 11 1 -1.9569 2.3392 -4.8561 12 1 -2.6553 1.6510 -2.6384 13 1 -2.0130 3.9535 -3.0469 14 6 2.6710 3.2844 -1.3687 15 6 2.4700 4.2207 -0.3719 16 6 3.1638 5.4161 -0.3964 17 6 4.0524 5.6786 -1.4222 18 6 4.2495 4.7444 -2.4219 19 6 3.5586 3.5474 -2.3952 20 6 3.3975 1.4563 0.5044 21 6 4.2733 0.2678 0.0738 22 6 4.8685 0.2943 1.4915 23 6 3.5525 0.9467 1.9469 24 1 -0.3634 0.3652 -0.9606 25 1 -0.3633 -1.0145 0.1640 26 1 -0.3634 0.6493 0.7966 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.7954 1.5810 -3.7081 30 1 1.7735 4.0169 0.4281 31 1 3.0095 6.1461 0.3844 32 1 4.5924 6.6137 -1.4429 33 1 4.9434 4.9496 -3.2236 34 1 3.7127 2.8175 -3.1762 35 1 3.8616 2.4275 0.3319 36 1 3.7054 -0.6365 -0.1444 37 1 4.9928 0.5157 -0.7066 38 1 5.7361 0.9470 1.5887 39 1 5.0337 -0.6967 1.9142 40 1 3.6903 1.7427 2.6787 41 1 2.7868 0.2290 2.2411 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706804548.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:12 Heat of formation + Delta-G solvation = 51.684216 kcal Electronic energy + Delta-G solvation = -20467.644653 eV Core-core repulsion = 17734.094272 eV Total energy + Delta-G solvation = -2733.550381 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.63696 -38.03998 -35.24217 -32.56953 -31.06714 -30.10991 -28.60332 -26.31270 -25.27260 -23.59159 -22.84812 -21.90611 -21.18377 -20.10357 -18.07893 -16.93660 -16.23292 -15.57927 -14.98239 -14.60730 -14.36623 -13.80157 -13.66745 -13.13345 -12.73641 -12.57408 -12.48921 -12.13262 -12.05292 -11.93619 -11.72566 -11.24102 -10.87380 -10.82770 -10.55232 -10.45327 -10.29074 -10.20542 -10.14709 -10.02760 -9.90136 -9.52678 -8.91563 -8.42435 -8.14401 -7.69210 -7.23759 -6.38112 -4.08033 2.17637 2.21656 3.40880 3.43546 3.60778 4.44585 4.55866 4.86046 5.04113 5.06252 5.26592 5.30420 5.44617 5.58084 5.65002 5.73694 5.84751 5.93553 6.05330 6.08509 6.14184 6.17006 6.23979 6.31322 6.35547 6.37753 6.42265 6.53096 6.63637 6.73881 6.78796 6.85251 6.94435 7.03426 7.21612 7.25830 7.46951 7.60484 7.74834 7.92400 8.07369 8.31980 8.56906 8.80336 9.56471 10.94450 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.014683 B = 0.010343 C = 0.007092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.541953 B = 2706.541645 C = 3947.282974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.073 3.927 3 N -0.516 5.516 4 C 0.229 3.771 5 H 0.019 0.981 6 C -0.560 4.560 7 H 0.062 0.938 8 C 0.021 3.979 9 N -0.905 5.905 10 Si 1.063 2.937 11 H -0.283 1.283 12 H -0.286 1.286 13 H -0.287 1.287 14 C -0.030 4.030 15 C -0.101 4.101 16 C -0.133 4.133 17 C -0.152 4.152 18 C -0.125 4.125 19 C -0.129 4.129 20 C 0.062 3.938 21 C -0.180 4.180 22 C -0.140 4.140 23 C -0.135 4.135 24 H 0.093 0.907 25 H 0.027 0.973 26 H 0.048 0.952 27 H 0.023 0.977 28 H 0.051 0.949 29 H 0.269 0.731 30 H 0.121 0.879 31 H 0.108 0.892 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.110 0.890 35 H 0.101 0.899 36 H 0.082 0.918 37 H 0.057 0.943 38 H 0.074 0.926 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.598 0.349 7.558 9.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.055 4.055 3 N -0.238 5.238 4 C 0.123 3.877 5 H 0.036 0.964 6 C -0.598 4.598 7 H 0.081 0.919 8 C -0.184 4.184 9 N -0.541 5.541 10 Si 0.892 3.108 11 H -0.209 1.209 12 H -0.212 1.212 13 H -0.213 1.213 14 C -0.031 4.031 15 C -0.119 4.119 16 C -0.151 4.151 17 C -0.170 4.170 18 C -0.143 4.143 19 C -0.147 4.147 20 C -0.048 4.048 21 C -0.219 4.219 22 C -0.178 4.178 23 C -0.172 4.172 24 H 0.112 0.888 25 H 0.046 0.954 26 H 0.068 0.932 27 H 0.041 0.959 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.139 0.861 31 H 0.126 0.874 32 H 0.124 0.876 33 H 0.125 0.875 34 H 0.128 0.872 35 H 0.119 0.881 36 H 0.100 0.900 37 H 0.076 0.924 38 H 0.092 0.908 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.167 0.621 6.609 7.838 hybrid contribution 1.712 -0.322 0.588 1.839 sum 5.879 0.299 7.197 9.298 Atomic orbital electron populations 1.22025 0.94995 0.98354 1.05092 1.21797 0.96514 0.89088 0.98101 1.62165 1.17305 1.17368 1.26993 1.18576 0.96032 0.87999 0.85103 0.96354 1.21757 0.92306 1.50255 0.95493 0.91940 1.25804 1.06120 0.93791 0.92711 1.70816 1.05870 1.41579 1.35872 0.83614 0.74377 0.76598 0.76258 1.20882 1.21226 1.21326 1.20590 0.91320 0.98774 0.92430 1.20949 0.98873 0.92820 0.99247 1.21036 0.98114 0.97356 0.98574 1.20829 1.00859 0.99073 0.96225 1.20941 1.00358 0.94591 0.98455 1.21016 0.97407 0.97349 0.98960 1.23288 0.89609 0.97453 0.94440 1.23668 1.00383 1.01310 0.96558 1.22695 0.97391 1.00335 0.97367 1.23093 0.96732 1.00036 0.97387 0.88832 0.95398 0.93243 0.95866 0.93113 0.91928 0.86143 0.87426 0.87587 0.87472 0.87233 0.88116 0.89971 0.92376 0.90765 0.92127 0.92023 0.90040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 9.09 37.15 0.34 -2.58 16 2 C 0.07 1.42 4.15 -3.82 -0.02 1.41 16 3 N -0.52 -10.53 4.16 -220.51 -0.92 -11.45 16 4 C 0.23 5.34 1.66 -70.01 -0.12 5.22 16 5 H 0.02 0.49 5.75 -51.93 -0.30 0.19 16 6 C -0.56 -14.36 5.19 -34.44 -0.18 -14.54 16 7 H 0.06 1.65 7.45 -52.49 -0.39 1.26 16 8 C 0.02 0.56 5.39 -17.82 -0.10 0.47 16 9 N -0.91 -25.76 13.62 55.43 0.76 -25.00 16 10 Si 1.06 24.39 29.91 -169.99 -5.08 19.31 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 13 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 14 C -0.03 -0.66 3.27 -104.63 -0.34 -1.00 16 15 C -0.10 -2.05 7.91 -39.59 -0.31 -2.36 16 16 C -0.13 -2.38 10.05 -39.59 -0.40 -2.78 16 17 C -0.15 -2.63 10.05 -39.58 -0.40 -3.03 16 18 C -0.13 -2.32 10.05 -39.58 -0.40 -2.72 16 19 C -0.13 -2.72 9.67 -39.59 -0.38 -3.11 16 20 C 0.06 1.10 3.27 -66.90 -0.22 0.88 16 21 C -0.18 -2.94 7.33 -25.92 -0.19 -3.13 16 22 C -0.14 -1.93 8.08 -25.92 -0.21 -2.14 16 23 C -0.13 -2.03 7.51 -25.92 -0.19 -2.22 16 24 H 0.09 2.15 5.56 -51.93 -0.29 1.86 16 25 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.02 0.49 7.05 -51.93 -0.37 0.12 16 28 H 0.05 0.88 5.51 -51.93 -0.29 0.59 16 29 H 0.27 7.61 6.29 -40.82 -0.26 7.36 16 30 H 0.12 2.50 7.98 -52.48 -0.42 2.08 16 31 H 0.11 1.64 8.06 -52.48 -0.42 1.22 16 32 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 33 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 34 H 0.11 2.38 7.77 -52.48 -0.41 1.97 16 35 H 0.10 1.92 5.59 -51.93 -0.29 1.63 16 36 H 0.08 1.38 5.85 -51.93 -0.30 1.08 16 37 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.07 0.96 8.14 -51.92 -0.42 0.53 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.08 1.23 6.34 -51.93 -0.33 0.90 16 LS Contribution 315.83 15.07 4.76 4.76 Total: -1.00 -27.15 315.83 -9.84 -36.99 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -6.24 Total: 7.03 kcal Atomic # 6 Polarization: -28.52 SS G_CDS: -3.11 Total: -31.63 kcal Atomic # 7 Polarization: -36.29 SS G_CDS: -0.16 Total: -36.45 kcal Atomic # 14 Polarization: 24.39 SS G_CDS: -5.08 Total: 19.31 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -27.15 -9.84 -36.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706804548.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.673 kcal (2) G-P(sol) polarization free energy of solvation -27.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds