Wall clock time and date at job start Mon Mar 30 2020 06:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46905 * 109.47129 * 2 1 4 4 C 1.46906 * 110.99688 * 282.37667 * 3 2 1 5 5 H 1.08990 * 109.47136 * 311.15438 * 4 3 2 6 6 C 1.50700 * 109.46995 * 71.15707 * 4 3 2 7 7 H 1.08001 * 120.00220 * 32.97007 * 6 4 3 8 8 C 1.37877 * 119.99635 * 212.96870 * 6 4 3 9 9 N 1.31507 * 120.00322 * 4.04787 * 8 6 4 10 10 Si 1.86805 * 119.99639 * 184.04178 * 8 6 4 11 11 H 1.48507 * 109.46789 * 180.02562 * 10 8 6 12 12 H 1.48498 * 109.46915 * 300.00028 * 10 8 6 13 13 H 1.48498 * 109.47344 * 60.00367 * 10 8 6 14 14 C 1.50705 * 109.46850 * 191.15348 * 4 3 2 15 15 C 1.38228 * 120.00132 * 311.41845 * 14 4 3 16 16 C 1.38236 * 119.99863 * 179.80854 * 15 14 4 17 17 C 1.38228 * 120.00302 * 0.40092 * 16 15 14 18 18 C 1.38240 * 119.99739 * 359.85027 * 17 16 15 19 19 C 1.38230 * 119.99827 * 131.69185 * 14 4 3 20 20 C 1.46899 * 111.00251 * 158.42224 * 3 2 1 21 21 C 1.53783 * 113.61080 * 37.08865 * 20 3 2 22 22 C 1.53784 * 87.07687 * 220.01749 * 21 20 3 23 23 C 1.53779 * 113.61350 * 299.59053 * 20 3 2 24 24 H 1.09003 * 109.47351 * 69.18396 * 1 2 3 25 25 H 1.09004 * 109.46942 * 189.18344 * 1 2 3 26 26 H 1.09004 * 109.47322 * 309.18173 * 1 2 3 27 27 H 1.08999 * 109.47489 * 239.99944 * 2 1 3 28 28 H 1.09002 * 109.47697 * 119.99639 * 2 1 3 29 29 H 0.97003 * 120.00002 * 354.50847 * 9 8 6 30 30 H 1.08008 * 120.00361 * 0.02562 * 15 14 4 31 31 H 1.08003 * 119.99843 * 180.23309 * 16 15 14 32 32 H 1.08000 * 120.00490 * 179.83019 * 17 16 15 33 33 H 1.07996 * 120.00354 * 179.97438 * 18 17 16 34 34 H 1.08008 * 120.00192 * 359.97438 * 19 14 4 35 35 H 1.09005 * 112.84743 * 168.38820 * 20 3 2 36 36 H 1.08994 * 113.61550 * 334.56080 * 21 20 3 37 37 H 1.09006 * 113.61684 * 105.47020 * 21 20 3 38 38 H 1.09008 * 113.61381 * 270.88045 * 22 21 20 39 39 H 1.08997 * 113.61354 * 139.98469 * 22 21 20 40 40 H 1.09001 * 113.61235 * 254.52237 * 23 20 3 41 41 H 1.08994 * 113.61465 * 25.34995 * 23 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.9179 1.9793 -1.3396 5 1 2.3459 1.2965 -2.0734 6 6 0.4688 2.2281 -1.6701 7 1 -0.2262 2.4916 -0.8866 8 6 0.0303 2.1194 -2.9727 9 7 0.8579 1.7214 -3.9141 10 14 -1.7394 2.5374 -3.4004 11 1 -1.9569 2.3392 -4.8561 12 1 -2.6553 1.6510 -2.6384 13 1 -2.0130 3.9535 -3.0469 14 6 2.6710 3.2844 -1.3687 15 6 2.4700 4.2207 -0.3719 16 6 3.1638 5.4161 -0.3964 17 6 4.0524 5.6786 -1.4222 18 6 4.2495 4.7444 -2.4219 19 6 3.5586 3.5474 -2.3952 20 6 3.3975 1.4563 0.5044 21 6 4.2733 0.2678 0.0738 22 6 4.8685 0.2943 1.4915 23 6 3.5525 0.9467 1.9469 24 1 -0.3634 0.3652 -0.9606 25 1 -0.3633 -1.0145 0.1640 26 1 -0.3634 0.6493 0.7966 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.7954 1.5810 -3.7081 30 1 1.7735 4.0169 0.4281 31 1 3.0095 6.1461 0.3844 32 1 4.5924 6.6137 -1.4429 33 1 4.9434 4.9496 -3.2236 34 1 3.7127 2.8175 -3.1762 35 1 3.8616 2.4275 0.3319 36 1 3.7054 -0.6365 -0.1444 37 1 4.9928 0.5157 -0.7066 38 1 5.7361 0.9470 1.5887 39 1 5.0337 -0.6967 1.9142 40 1 3.6903 1.7427 2.6787 41 1 2.7868 0.2290 2.2411 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706804548.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:12 Heat of formation + Delta-G solvation = 38.122974 kcal Electronic energy + Delta-G solvation = -20468.232712 eV Core-core repulsion = 17734.094272 eV Total energy + Delta-G solvation = -2734.138440 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.14010 -39.50103 -36.85928 -34.41308 -32.71778 -31.63794 -30.16997 -28.12128 -26.57040 -25.18222 -24.52181 -23.42258 -22.71072 -21.70841 -19.50192 -18.82926 -17.74104 -17.04528 -16.44309 -16.24291 -15.86994 -15.63641 -15.26780 -14.76107 -14.31095 -14.06945 -14.06287 -13.67602 -13.59063 -13.36826 -13.20421 -12.86181 -12.61534 -12.34048 -12.19725 -11.99559 -11.87554 -11.79902 -11.70949 -11.55812 -11.39512 -11.00988 -10.73344 -10.43362 -9.67532 -9.30160 -8.94853 -8.44707 -6.17105 0.63399 0.69172 1.52653 1.59427 1.77080 2.56431 2.98884 3.26776 3.35024 3.76964 3.81795 3.97054 4.08186 4.14742 4.21436 4.25885 4.37832 4.44269 4.58941 4.70132 4.77203 4.79086 4.81381 4.84319 4.86891 4.97820 5.01204 5.04179 5.14352 5.23418 5.28892 5.30826 5.36763 5.52228 5.69684 5.71449 5.78138 5.95954 6.02864 6.15156 6.30325 6.57622 6.60571 6.82081 7.54252 8.84195 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.014683 B = 0.010343 C = 0.007092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.541953 B = 2706.541645 C = 3947.282974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.075 3.925 3 N -0.518 5.518 4 C 0.238 3.762 5 H -0.022 1.022 6 C -0.550 4.550 7 H 0.052 0.948 8 C -0.027 4.027 9 N -0.938 5.938 10 Si 1.101 2.899 11 H -0.290 1.290 12 H -0.268 1.268 13 H -0.276 1.276 14 C -0.050 4.050 15 C -0.112 4.112 16 C -0.125 4.125 17 C -0.141 4.141 18 C -0.125 4.125 19 C -0.153 4.153 20 C 0.049 3.951 21 C -0.184 4.184 22 C -0.120 4.120 23 C -0.124 4.124 24 H 0.057 0.943 25 H 0.054 0.946 26 H 0.051 0.949 27 H -0.001 1.001 28 H 0.079 0.921 29 H 0.256 0.744 30 H 0.112 0.888 31 H 0.143 0.857 32 H 0.148 0.852 33 H 0.133 0.867 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.045 0.955 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.075 0.925 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.376 1.759 9.801 11.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.053 4.053 3 N -0.241 5.241 4 C 0.131 3.869 5 H -0.005 1.005 6 C -0.589 4.589 7 H 0.070 0.930 8 C -0.225 4.225 9 N -0.577 5.577 10 Si 0.924 3.076 11 H -0.216 1.216 12 H -0.193 1.193 13 H -0.202 1.202 14 C -0.051 4.051 15 C -0.131 4.131 16 C -0.143 4.143 17 C -0.159 4.159 18 C -0.143 4.143 19 C -0.172 4.172 20 C -0.060 4.060 21 C -0.224 4.224 22 C -0.158 4.158 23 C -0.162 4.162 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.017 0.983 28 H 0.098 0.902 29 H 0.067 0.933 30 H 0.130 0.870 31 H 0.161 0.839 32 H 0.166 0.834 33 H 0.151 0.849 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.092 0.908 37 H 0.064 0.936 38 H 0.106 0.894 39 H 0.100 0.900 40 H 0.094 0.906 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.953 2.028 8.886 10.373 hybrid contribution 1.563 -0.725 -0.049 1.723 sum 6.516 1.303 8.836 11.056 Atomic orbital electron populations 1.21897 0.95126 0.99825 1.02975 1.21828 0.96408 0.88838 0.98227 1.62127 1.19390 1.17586 1.24961 1.18305 0.94710 0.88369 0.85518 1.00472 1.21872 0.93501 1.48625 0.94856 0.92977 1.26908 1.08735 0.93738 0.93160 1.70907 1.05536 1.44661 1.36581 0.83132 0.71427 0.77220 0.75785 1.21601 1.19333 1.20211 1.20433 0.92589 0.98352 0.93776 1.20938 0.99640 0.93810 0.98703 1.21416 0.96828 0.96664 0.99407 1.21291 0.99935 0.99927 0.94724 1.21257 0.99942 0.93523 0.99620 1.21019 0.98934 0.98571 0.98644 1.23414 0.88249 0.97521 0.96811 1.23655 1.00156 1.00235 0.98333 1.22638 0.97053 1.01701 0.94389 1.23042 0.97443 1.00346 0.95380 0.92435 0.92756 0.93015 0.98307 0.90247 0.93294 0.86974 0.83920 0.83428 0.84919 0.89542 0.89354 0.90766 0.93580 0.89413 0.89963 0.90648 0.89804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.61 9.09 71.98 0.65 -4.95 16 2 C 0.07 2.96 4.15 86.30 0.36 3.32 16 3 N -0.52 -21.64 4.16 -851.57 -3.55 -25.19 16 4 C 0.24 11.66 1.66 43.42 0.07 11.73 16 5 H -0.02 -1.26 5.75 -2.39 -0.01 -1.27 16 6 C -0.55 -29.37 5.19 25.60 0.13 -29.24 16 7 H 0.05 2.83 7.45 -2.91 -0.02 2.81 16 8 C -0.03 -1.49 5.39 84.66 0.46 -1.03 16 9 N -0.94 -56.39 13.62 21.45 0.29 -56.10 16 10 Si 1.10 50.34 29.91 68.60 2.05 52.39 16 11 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 12 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 13 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 14 C -0.05 -2.28 3.27 -19.87 -0.06 -2.35 16 15 C -0.11 -4.53 7.91 22.27 0.18 -4.35 16 16 C -0.13 -4.13 10.05 22.27 0.22 -3.91 16 17 C -0.14 -4.38 10.05 22.27 0.22 -4.16 16 18 C -0.13 -4.46 10.05 22.27 0.22 -4.24 16 19 C -0.15 -6.69 9.67 22.27 0.22 -6.47 16 20 C 0.05 1.75 3.27 45.44 0.15 1.90 16 21 C -0.18 -6.04 7.33 31.12 0.23 -5.81 16 22 C -0.12 -2.99 8.08 31.12 0.25 -2.74 16 23 C -0.12 -3.46 7.51 31.12 0.23 -3.23 16 24 H 0.06 2.72 5.56 -2.39 -0.01 2.70 16 25 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 27 H 0.00 -0.06 7.05 -2.39 -0.02 -0.08 16 28 H 0.08 2.67 5.51 -2.39 -0.01 2.65 16 29 H 0.26 15.65 6.29 -92.71 -0.58 15.07 16 30 H 0.11 4.63 7.98 -2.91 -0.02 4.60 16 31 H 0.14 3.69 8.06 -2.91 -0.02 3.67 16 32 H 0.15 3.43 8.06 -2.91 -0.02 3.40 16 33 H 0.13 3.96 8.06 -2.91 -0.02 3.93 16 34 H 0.09 4.08 7.77 -2.91 -0.02 4.05 16 35 H 0.09 3.38 5.59 -2.38 -0.01 3.36 16 36 H 0.07 2.53 5.85 -2.39 -0.01 2.52 16 37 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 38 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 39 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.08 2.31 6.34 -2.39 -0.02 2.29 16 Total: -1.00 -62.05 315.83 3.51 -58.54 By element: Atomic # 1 Polarization: 24.70 SS G_CDS: 1.18 Total: 25.88 kcal Atomic # 6 Polarization: -59.06 SS G_CDS: 3.53 Total: -55.53 kcal Atomic # 7 Polarization: -78.03 SS G_CDS: -3.25 Total: -81.29 kcal Atomic # 14 Polarization: 50.34 SS G_CDS: 2.05 Total: 52.39 kcal Total: -62.05 3.51 -58.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706804548.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.662 kcal (2) G-P(sol) polarization free energy of solvation -62.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds