Wall clock time and date at job start Mon Mar 30 2020 06:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46894 * 109.47188 * 2 1 4 4 C 1.46900 * 111.00182 * 286.97947 * 3 2 1 5 5 H 1.08989 * 109.47174 * 315.51927 * 4 3 2 6 6 C 1.50700 * 109.47058 * 195.51589 * 4 3 2 7 7 H 1.07999 * 119.99746 * 125.32675 * 6 4 3 8 8 C 1.37877 * 120.00261 * 305.32934 * 6 4 3 9 9 N 1.31516 * 119.99846 * 8.64109 * 8 6 4 10 10 Si 1.86806 * 120.00157 * 188.64742 * 8 6 4 11 11 H 1.48498 * 109.47258 * 89.99838 * 10 8 6 12 12 H 1.48501 * 109.46988 * 210.00112 * 10 8 6 13 13 H 1.48498 * 109.46722 * 329.99870 * 10 8 6 14 14 C 1.50705 * 109.47000 * 75.51852 * 4 3 2 15 15 C 1.38233 * 119.99513 * 215.95182 * 14 4 3 16 16 C 1.38237 * 119.99382 * 179.78997 * 15 14 4 17 17 C 1.38233 * 120.00398 * 0.43788 * 16 15 14 18 18 C 1.38232 * 119.99894 * 359.81660 * 17 16 15 19 19 C 1.38231 * 120.00075 * 36.22952 * 14 4 3 20 20 C 1.46900 * 110.99842 * 163.02573 * 3 2 1 21 21 C 1.53777 * 113.61704 * 36.45311 * 20 3 2 22 22 C 1.53785 * 87.07998 * 220.02005 * 21 20 3 23 23 C 1.53774 * 87.08174 * 25.43072 * 22 21 20 24 24 H 1.08992 * 109.47023 * 188.66853 * 1 2 3 25 25 H 1.09005 * 109.46903 * 308.66561 * 1 2 3 26 26 H 1.09002 * 109.46772 * 68.66380 * 1 2 3 27 27 H 1.09002 * 109.46554 * 239.99989 * 2 1 3 28 28 H 1.08998 * 109.46993 * 120.00097 * 2 1 3 29 29 H 0.97002 * 120.00029 * 179.97438 * 9 8 6 30 30 H 1.07992 * 120.00457 * 359.97438 * 15 14 4 31 31 H 1.08006 * 119.99944 * 180.27676 * 16 15 14 32 32 H 1.08004 * 120.00378 * 179.83511 * 17 16 15 33 33 H 1.08005 * 120.00369 * 179.97438 * 18 17 16 34 34 H 1.08003 * 120.00134 * 359.97399 * 19 14 4 35 35 H 1.09000 * 112.84601 * 167.76186 * 20 3 2 36 36 H 1.08998 * 113.60945 * 334.56600 * 21 20 3 37 37 H 1.09002 * 113.61602 * 105.46799 * 21 20 3 38 38 H 1.08998 * 113.61236 * 270.88258 * 22 21 20 39 39 H 1.09001 * 113.61149 * 139.98437 * 22 21 20 40 40 H 1.09009 * 113.61604 * 220.01950 * 23 22 21 41 41 H 1.09003 * 113.69109 * 89.13046 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.8176 2.0148 -1.3116 5 1 2.1164 1.3213 -2.0976 6 6 2.6524 3.2662 -1.4019 7 1 3.3460 3.3948 -2.2196 8 6 2.5307 4.2470 -0.4404 9 7 1.8179 4.0221 0.6417 10 14 3.3782 5.8952 -0.6749 11 1 2.4638 6.8254 -1.3846 12 1 3.7310 6.4633 0.6510 13 1 4.6134 5.7068 -1.4773 14 6 0.3624 2.3684 -1.4802 15 6 -0.2359 2.2597 -2.7216 16 6 -1.5719 2.5799 -2.8752 17 6 -2.3071 3.0175 -1.7895 18 6 -1.7074 3.1313 -0.5493 19 6 -0.3725 2.8070 -0.3947 20 6 3.4319 1.4440 0.4004 21 6 4.2680 0.2603 -0.1138 22 6 4.9682 0.2618 1.2554 23 6 3.6929 0.9104 1.8188 24 1 -0.3633 -1.0159 0.1549 25 1 -0.3633 0.6421 0.8025 26 1 -0.3633 0.3739 -0.9573 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.7325 4.7120 1.3183 30 1 0.3395 1.9217 -3.5706 31 1 -2.0406 2.4907 -3.8442 32 1 -3.3502 3.2703 -1.9102 33 1 -2.2817 3.4736 0.2989 34 1 0.0960 2.8959 0.5744 35 1 3.8856 2.4165 0.2094 36 1 3.6816 -0.6388 -0.3033 37 1 4.9279 0.5189 -0.9420 38 1 5.8432 0.9104 1.2976 39 1 5.1607 -0.7365 1.6484 40 1 3.8883 1.6940 2.5510 41 1 2.9484 0.1902 2.1583 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706804549.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:15 Heat of formation + Delta-G solvation = 67.651909 kcal Electronic energy + Delta-G solvation = -20794.821385 eV Core-core repulsion = 18061.963415 eV Total energy + Delta-G solvation = -2732.857970 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.19911 -37.83431 -34.73631 -32.65698 -30.35395 -29.57472 -29.13667 -26.15599 -24.83242 -23.77521 -22.35656 -21.64167 -20.93825 -19.64407 -17.76298 -16.45331 -15.76284 -15.11965 -14.97495 -14.50656 -14.05480 -13.81578 -13.63868 -12.69593 -12.52399 -12.30982 -12.20165 -12.05492 -11.71783 -11.59279 -11.45731 -10.98394 -10.86912 -10.74079 -10.54473 -10.36645 -10.19173 -10.07914 -9.92044 -9.72829 -9.55350 -9.18039 -9.05604 -8.40264 -7.75725 -7.26692 -6.72836 -5.96106 -4.13166 2.52099 2.63976 3.27206 3.34572 3.37603 4.37036 4.95021 5.14412 5.32331 5.44035 5.47966 5.69046 5.84077 5.88814 5.93984 5.97420 6.04613 6.21010 6.26368 6.31807 6.42393 6.43058 6.50157 6.61180 6.65400 6.73436 6.77832 6.79274 6.89136 6.95966 7.03171 7.12730 7.19634 7.31894 7.49365 7.60486 7.70477 7.83759 8.03921 8.14388 8.36199 8.52748 8.75166 9.02569 9.50764 10.95850 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.015815 B = 0.011054 C = 0.007639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.054198 B = 2532.306125 C = 3664.664604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.047 3.953 3 N -0.484 5.484 4 C 0.246 3.754 5 H -0.001 1.001 6 C -0.531 4.531 7 H 0.058 0.942 8 C 0.084 3.916 9 N -0.826 5.826 10 Si 0.878 3.122 11 H -0.280 1.280 12 H -0.286 1.286 13 H -0.275 1.275 14 C -0.020 4.020 15 C -0.144 4.144 16 C -0.144 4.144 17 C -0.153 4.153 18 C -0.152 4.152 19 C -0.064 4.064 20 C 0.111 3.889 21 C -0.188 4.188 22 C -0.142 4.142 23 C -0.136 4.136 24 H 0.033 0.967 25 H 0.063 0.937 26 H 0.059 0.941 27 H 0.013 0.987 28 H 0.056 0.944 29 H 0.258 0.742 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.169 0.831 35 H 0.124 0.876 36 H 0.072 0.928 37 H 0.054 0.946 38 H 0.071 0.929 39 H 0.052 0.948 40 H 0.058 0.942 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.909 -5.262 0.491 5.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.082 4.082 3 N -0.205 5.205 4 C 0.140 3.860 5 H 0.017 0.983 6 C -0.569 4.569 7 H 0.076 0.924 8 C -0.123 4.123 9 N -0.459 5.459 10 Si 0.705 3.295 11 H -0.206 1.206 12 H -0.212 1.212 13 H -0.200 1.200 14 C -0.021 4.021 15 C -0.162 4.162 16 C -0.162 4.162 17 C -0.172 4.172 18 C -0.171 4.171 19 C -0.082 4.082 20 C 0.001 3.999 21 C -0.228 4.228 22 C -0.180 4.180 23 C -0.174 4.174 24 H 0.052 0.948 25 H 0.082 0.918 26 H 0.078 0.922 27 H 0.031 0.969 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.119 0.881 31 H 0.117 0.883 32 H 0.115 0.885 33 H 0.118 0.882 34 H 0.186 0.814 35 H 0.142 0.858 36 H 0.090 0.910 37 H 0.073 0.927 38 H 0.090 0.910 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.262 -4.905 1.027 5.168 hybrid contribution 0.764 0.612 -0.869 1.309 sum -0.499 -4.294 0.158 4.325 Atomic orbital electron populations 1.22055 0.96179 0.99297 1.02968 1.22137 0.95347 0.92289 0.98408 1.61867 1.16715 1.11499 1.30429 1.18223 0.88993 0.93255 0.85533 0.98290 1.20879 1.23211 1.02352 1.10497 0.92376 1.24879 0.95105 0.97512 0.94846 1.69979 1.36960 1.32077 1.06842 0.86833 0.80018 0.85084 0.77548 1.20644 1.21173 1.20020 1.20255 0.95778 0.94276 0.91792 1.20893 0.94448 1.03434 0.97442 1.20723 0.94802 1.03147 0.97521 1.20773 0.98551 1.03929 0.93909 1.21189 0.96558 1.03084 0.96233 1.21985 0.91066 0.92638 1.02485 1.22911 0.87648 0.97585 0.91717 1.23781 1.00629 1.01899 0.96445 1.22679 0.97622 0.99660 0.98014 1.23086 0.95898 0.99464 0.98924 0.94833 0.91763 0.92183 0.96866 0.92546 0.93160 0.88120 0.88297 0.88498 0.88241 0.81427 0.85806 0.90983 0.92704 0.91045 0.92921 0.92331 0.91082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 8.41 37.16 0.31 -2.41 16 2 C 0.05 0.89 4.20 -3.82 -0.02 0.87 16 3 N -0.48 -10.37 2.66 -220.53 -0.59 -10.96 16 4 C 0.25 5.74 2.08 -70.01 -0.15 5.59 16 5 H 0.00 -0.02 7.68 -51.93 -0.40 -0.41 16 6 C -0.53 -13.38 7.00 -34.44 -0.24 -13.62 16 7 H 0.06 1.50 7.83 -52.49 -0.41 1.09 16 8 C 0.08 2.09 4.04 -17.82 -0.07 2.02 16 9 N -0.83 -20.53 8.56 55.43 0.47 -20.05 16 10 Si 0.88 20.01 29.55 -169.99 -5.02 14.98 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 12 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 13 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 14 C -0.02 -0.45 2.48 -104.62 -0.26 -0.71 16 15 C -0.14 -3.03 9.29 -39.58 -0.37 -3.40 16 16 C -0.14 -2.77 10.05 -39.58 -0.40 -3.17 16 17 C -0.15 -2.92 10.05 -39.59 -0.40 -3.32 16 18 C -0.15 -3.10 10.05 -39.58 -0.40 -3.50 16 19 C -0.06 -1.42 5.55 -39.58 -0.22 -1.64 16 20 C 0.11 2.28 2.95 -66.90 -0.20 2.09 16 21 C -0.19 -3.39 7.33 -25.92 -0.19 -3.58 16 22 C -0.14 -2.28 8.08 -25.92 -0.21 -2.49 16 23 C -0.14 -2.46 7.53 -25.92 -0.20 -2.66 16 24 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.06 1.25 7.06 -51.93 -0.37 0.88 16 26 H 0.06 1.19 5.38 -51.93 -0.28 0.91 16 27 H 0.01 0.26 6.82 -51.93 -0.35 -0.10 16 28 H 0.06 1.02 5.75 -51.93 -0.30 0.72 16 29 H 0.26 6.31 8.31 -40.82 -0.34 5.97 16 30 H 0.10 2.01 8.06 -52.49 -0.42 1.59 16 31 H 0.10 1.64 8.06 -52.48 -0.42 1.21 16 32 H 0.10 1.59 8.06 -52.48 -0.42 1.16 16 33 H 0.10 1.83 8.06 -52.48 -0.42 1.41 16 34 H 0.17 4.08 5.36 -52.48 -0.28 3.80 16 35 H 0.12 2.92 5.47 -51.93 -0.28 2.64 16 36 H 0.07 1.27 5.79 -51.93 -0.30 0.97 16 37 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.06 1.08 8.14 -51.92 -0.42 0.66 16 41 H 0.07 1.26 6.34 -51.93 -0.33 0.93 16 LS Contribution 305.87 15.07 4.61 4.61 Total: -1.00 -24.63 305.87 -9.76 -34.39 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -6.24 Total: 6.94 kcal Atomic # 6 Polarization: -26.92 SS G_CDS: -2.99 Total: -29.92 kcal Atomic # 7 Polarization: -30.90 SS G_CDS: -0.11 Total: -31.01 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -24.63 -9.76 -34.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706804549.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.045 kcal (2) G-P(sol) polarization free energy of solvation -24.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds