Wall clock time and date at job start Mon Mar 30 2020 06:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46894 * 109.47188 * 2 1 4 4 C 1.46900 * 111.00182 * 286.97947 * 3 2 1 5 5 H 1.08989 * 109.47174 * 315.51927 * 4 3 2 6 6 C 1.50700 * 109.47058 * 195.51589 * 4 3 2 7 7 H 1.07999 * 119.99746 * 125.32675 * 6 4 3 8 8 C 1.37877 * 120.00261 * 305.32934 * 6 4 3 9 9 N 1.31516 * 119.99846 * 8.64109 * 8 6 4 10 10 Si 1.86806 * 120.00157 * 188.64742 * 8 6 4 11 11 H 1.48498 * 109.47258 * 89.99838 * 10 8 6 12 12 H 1.48501 * 109.46988 * 210.00112 * 10 8 6 13 13 H 1.48498 * 109.46722 * 329.99870 * 10 8 6 14 14 C 1.50705 * 109.47000 * 75.51852 * 4 3 2 15 15 C 1.38233 * 119.99513 * 215.95182 * 14 4 3 16 16 C 1.38237 * 119.99382 * 179.78997 * 15 14 4 17 17 C 1.38233 * 120.00398 * 0.43788 * 16 15 14 18 18 C 1.38232 * 119.99894 * 359.81660 * 17 16 15 19 19 C 1.38231 * 120.00075 * 36.22952 * 14 4 3 20 20 C 1.46900 * 110.99842 * 163.02573 * 3 2 1 21 21 C 1.53777 * 113.61704 * 36.45311 * 20 3 2 22 22 C 1.53785 * 87.07998 * 220.02005 * 21 20 3 23 23 C 1.53774 * 87.08174 * 25.43072 * 22 21 20 24 24 H 1.08992 * 109.47023 * 188.66853 * 1 2 3 25 25 H 1.09005 * 109.46903 * 308.66561 * 1 2 3 26 26 H 1.09002 * 109.46772 * 68.66380 * 1 2 3 27 27 H 1.09002 * 109.46554 * 239.99989 * 2 1 3 28 28 H 1.08998 * 109.46993 * 120.00097 * 2 1 3 29 29 H 0.97002 * 120.00029 * 179.97438 * 9 8 6 30 30 H 1.07992 * 120.00457 * 359.97438 * 15 14 4 31 31 H 1.08006 * 119.99944 * 180.27676 * 16 15 14 32 32 H 1.08004 * 120.00378 * 179.83511 * 17 16 15 33 33 H 1.08005 * 120.00369 * 179.97438 * 18 17 16 34 34 H 1.08003 * 120.00134 * 359.97399 * 19 14 4 35 35 H 1.09000 * 112.84601 * 167.76186 * 20 3 2 36 36 H 1.08998 * 113.60945 * 334.56600 * 21 20 3 37 37 H 1.09002 * 113.61602 * 105.46799 * 21 20 3 38 38 H 1.08998 * 113.61236 * 270.88258 * 22 21 20 39 39 H 1.09001 * 113.61149 * 139.98437 * 22 21 20 40 40 H 1.09009 * 113.61604 * 220.01950 * 23 22 21 41 41 H 1.09003 * 113.69109 * 89.13046 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.8176 2.0148 -1.3116 5 1 2.1164 1.3213 -2.0976 6 6 2.6524 3.2662 -1.4019 7 1 3.3460 3.3948 -2.2196 8 6 2.5307 4.2470 -0.4404 9 7 1.8179 4.0221 0.6417 10 14 3.3782 5.8952 -0.6749 11 1 2.4638 6.8254 -1.3846 12 1 3.7310 6.4633 0.6510 13 1 4.6134 5.7068 -1.4773 14 6 0.3624 2.3684 -1.4802 15 6 -0.2359 2.2597 -2.7216 16 6 -1.5719 2.5799 -2.8752 17 6 -2.3071 3.0175 -1.7895 18 6 -1.7074 3.1313 -0.5493 19 6 -0.3725 2.8070 -0.3947 20 6 3.4319 1.4440 0.4004 21 6 4.2680 0.2603 -0.1138 22 6 4.9682 0.2618 1.2554 23 6 3.6929 0.9104 1.8188 24 1 -0.3633 -1.0159 0.1549 25 1 -0.3633 0.6421 0.8025 26 1 -0.3633 0.3739 -0.9573 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.7325 4.7120 1.3183 30 1 0.3395 1.9217 -3.5706 31 1 -2.0406 2.4907 -3.8442 32 1 -3.3502 3.2703 -1.9102 33 1 -2.2817 3.4736 0.2989 34 1 0.0960 2.8959 0.5744 35 1 3.8856 2.4165 0.2094 36 1 3.6816 -0.6388 -0.3033 37 1 4.9279 0.5189 -0.9420 38 1 5.8432 0.9104 1.2976 39 1 5.1607 -0.7365 1.6484 40 1 3.8883 1.6940 2.5510 41 1 2.9484 0.1902 2.1583 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706804549.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:15 Heat of formation + Delta-G solvation = 57.899119 kcal Electronic energy + Delta-G solvation = -20795.244297 eV Core-core repulsion = 18061.963415 eV Total energy + Delta-G solvation = -2733.280882 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.79513 -39.39106 -36.34384 -34.44561 -32.02227 -31.17910 -30.72751 -27.91558 -26.31146 -25.41149 -23.96919 -23.22108 -22.49403 -21.29887 -19.34164 -18.21424 -17.34195 -16.87252 -16.63048 -16.09299 -15.65949 -15.46549 -15.24199 -14.31268 -14.09608 -13.95338 -13.78296 -13.71523 -13.20261 -13.15393 -13.02623 -12.78312 -12.60149 -12.34435 -12.14173 -12.02222 -11.79098 -11.62055 -11.55579 -11.37795 -11.13664 -10.85086 -10.65843 -10.28190 -9.36940 -8.91878 -8.37519 -7.85504 -6.07781 0.90029 1.04904 1.40981 1.46516 1.50657 2.47369 3.21112 3.42276 3.65878 4.01689 4.03877 4.23691 4.37277 4.38795 4.41716 4.42493 4.55888 4.71241 4.77761 4.82200 4.91698 4.96537 5.01356 5.05279 5.16363 5.19489 5.24249 5.29374 5.29838 5.41185 5.48559 5.57398 5.60642 5.70861 5.78231 5.89865 5.98532 6.10896 6.28037 6.47146 6.61831 6.72028 7.06826 7.25647 7.56888 9.02751 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.015815 B = 0.011054 C = 0.007639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.054198 B = 2532.306125 C = 3664.664604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.048 3.952 3 N -0.490 5.490 4 C 0.250 3.750 5 H -0.021 1.021 6 C -0.549 4.549 7 H 0.039 0.961 8 C 0.061 3.939 9 N -0.829 5.829 10 Si 0.921 3.079 11 H -0.288 1.288 12 H -0.282 1.282 13 H -0.278 1.278 14 C -0.035 4.035 15 C -0.161 4.161 16 C -0.140 4.140 17 C -0.149 4.149 18 C -0.159 4.159 19 C -0.076 4.076 20 C 0.094 3.906 21 C -0.183 4.183 22 C -0.123 4.123 23 C -0.130 4.130 24 H 0.059 0.941 25 H 0.051 0.949 26 H 0.043 0.957 27 H 0.011 0.989 28 H 0.071 0.929 29 H 0.256 0.744 30 H 0.103 0.897 31 H 0.131 0.869 32 H 0.132 0.868 33 H 0.117 0.883 34 H 0.146 0.854 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.046 0.954 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.050 0.950 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.891 -5.987 0.727 6.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.080 4.080 3 N -0.212 5.212 4 C 0.144 3.856 5 H -0.004 1.004 6 C -0.587 4.587 7 H 0.057 0.943 8 C -0.146 4.146 9 N -0.462 5.462 10 Si 0.748 3.252 11 H -0.214 1.214 12 H -0.207 1.207 13 H -0.203 1.203 14 C -0.037 4.037 15 C -0.179 4.179 16 C -0.158 4.158 17 C -0.167 4.167 18 C -0.177 4.177 19 C -0.094 4.094 20 C -0.015 4.015 21 C -0.222 4.222 22 C -0.161 4.161 23 C -0.168 4.168 24 H 0.078 0.922 25 H 0.070 0.930 26 H 0.062 0.938 27 H 0.029 0.971 28 H 0.089 0.911 29 H 0.065 0.935 30 H 0.121 0.879 31 H 0.149 0.851 32 H 0.149 0.851 33 H 0.135 0.865 34 H 0.164 0.836 35 H 0.107 0.893 36 H 0.097 0.903 37 H 0.065 0.935 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.069 0.931 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.239 -5.636 1.270 6.196 hybrid contribution 1.027 0.825 -0.981 1.642 sum -1.213 -4.811 0.288 4.970 Atomic orbital electron populations 1.21935 0.95514 1.00484 1.01550 1.22170 0.95864 0.91092 0.98840 1.61832 1.17360 1.12836 1.29132 1.18087 0.89547 0.92152 0.85847 1.00372 1.20920 1.23750 1.03791 1.10204 0.94296 1.25194 0.95582 0.99036 0.94748 1.70089 1.37186 1.32148 1.06804 0.86173 0.79030 0.82677 0.77308 1.21426 1.20704 1.20317 1.20208 0.95405 0.95387 0.92652 1.21088 0.95723 1.04081 0.97025 1.21077 0.93908 1.01647 0.99152 1.21144 1.00126 1.02423 0.92982 1.21426 0.95878 1.02674 0.97730 1.21751 0.92151 0.94110 1.01437 1.22869 0.87598 0.97034 0.94024 1.23707 1.00295 1.00830 0.97400 1.22603 0.96674 1.01011 0.95809 1.23030 0.97205 0.99378 0.97151 0.92165 0.93009 0.93754 0.97140 0.91104 0.93456 0.87890 0.85147 0.85058 0.86515 0.83630 0.89253 0.90330 0.93550 0.90441 0.90218 0.93110 0.90428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.95 8.41 71.98 0.61 -4.34 16 2 C 0.05 1.83 4.20 86.31 0.36 2.19 16 3 N -0.49 -21.34 2.66 -851.61 -2.27 -23.61 16 4 C 0.25 12.03 2.08 43.42 0.09 12.12 16 5 H -0.02 -1.07 7.68 -2.39 -0.02 -1.09 16 6 C -0.55 -28.64 7.00 25.60 0.18 -28.46 16 7 H 0.04 2.11 7.83 -2.91 -0.02 2.09 16 8 C 0.06 3.12 4.04 84.65 0.34 3.46 16 9 N -0.83 -42.04 8.56 21.45 0.18 -41.86 16 10 Si 0.92 41.83 29.55 68.60 2.03 43.86 16 11 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 12 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 13 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 14 C -0.04 -1.62 2.48 -19.87 -0.05 -1.67 16 15 C -0.16 -6.72 9.29 22.27 0.21 -6.51 16 16 C -0.14 -5.05 10.05 22.27 0.22 -4.83 16 17 C -0.15 -5.23 10.05 22.27 0.22 -5.01 16 18 C -0.16 -6.23 10.05 22.27 0.22 -6.01 16 19 C -0.08 -3.41 5.55 22.27 0.12 -3.29 16 20 C 0.09 3.93 2.95 45.44 0.13 4.06 16 21 C -0.18 -6.50 7.33 31.12 0.23 -6.27 16 22 C -0.12 -3.73 8.08 31.12 0.25 -3.48 16 23 C -0.13 -4.59 7.53 31.12 0.23 -4.35 16 24 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.05 1.98 7.06 -2.38 -0.02 1.96 16 26 H 0.04 1.73 5.38 -2.39 -0.01 1.72 16 27 H 0.01 0.40 6.82 -2.39 -0.02 0.39 16 28 H 0.07 2.44 5.75 -2.39 -0.01 2.43 16 29 H 0.26 12.68 8.31 -92.71 -0.77 11.91 16 30 H 0.10 4.14 8.06 -2.91 -0.02 4.11 16 31 H 0.13 3.85 8.06 -2.91 -0.02 3.82 16 32 H 0.13 3.72 8.06 -2.91 -0.02 3.69 16 33 H 0.12 4.08 8.06 -2.91 -0.02 4.05 16 34 H 0.15 7.21 5.36 -2.91 -0.02 7.19 16 35 H 0.09 4.37 5.47 -2.39 -0.01 4.35 16 36 H 0.08 2.68 5.79 -2.39 -0.01 2.66 16 37 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 41 H 0.08 2.63 6.34 -2.39 -0.02 2.62 16 Total: -1.00 -53.26 305.87 4.32 -48.94 By element: Atomic # 1 Polarization: 24.06 SS G_CDS: 1.00 Total: 25.06 kcal Atomic # 6 Polarization: -55.77 SS G_CDS: 3.38 Total: -52.39 kcal Atomic # 7 Polarization: -63.39 SS G_CDS: -2.08 Total: -65.47 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -53.26 4.32 -48.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706804549.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.834 kcal (2) G-P(sol) polarization free energy of solvation -53.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds