Wall clock time and date at job start Mon Mar 30 2020 06:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.46942 * 2 1 4 4 N 1.46900 * 109.47039 * 119.99729 * 2 1 3 5 5 C 1.46901 * 111.00216 * 274.99804 * 4 2 1 6 6 H 1.08999 * 109.46667 * 35.00127 * 5 4 2 7 7 C 1.50695 * 109.47573 * 275.00384 * 5 4 2 8 8 H 1.08000 * 119.99939 * 295.07139 * 7 5 4 9 9 C 1.37882 * 120.00405 * 115.06464 * 7 5 4 10 10 N 1.31509 * 120.00102 * 184.90501 * 9 7 5 11 11 Si 1.86794 * 119.99425 * 4.90264 * 9 7 5 12 12 H 1.48497 * 109.47241 * 84.71706 * 11 9 7 13 13 H 1.48508 * 109.46902 * 204.71502 * 11 9 7 14 14 H 1.48497 * 109.47605 * 324.71262 * 11 9 7 15 15 C 1.50699 * 109.47169 * 155.00153 * 5 4 2 16 16 C 1.38235 * 119.99670 * 44.78939 * 15 5 4 17 17 C 1.38238 * 119.99465 * 179.78764 * 16 15 5 18 18 C 1.38239 * 120.00251 * 0.44745 * 17 16 15 19 19 C 1.38230 * 119.99841 * 359.80619 * 18 17 16 20 20 C 1.38234 * 120.00239 * 359.97438 * 19 18 17 21 21 C 1.53001 * 109.47291 * 239.99978 * 2 1 3 22 22 C 1.52998 * 115.55885 * 274.31194 * 21 2 1 23 23 C 1.52999 * 117.49819 * 59.99774 * 21 2 1 24 24 C 1.53005 * 60.03191 * 107.50152 * 23 21 2 25 25 H 1.09005 * 109.46942 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47374 * 299.99935 * 1 2 3 27 27 H 1.08995 * 109.47330 * 60.00185 * 1 2 3 28 28 H 1.00901 * 110.99667 * 151.05018 * 4 2 1 29 29 H 0.96996 * 120.00050 * 180.02562 * 10 9 7 30 30 H 1.07994 * 120.00256 * 0.02562 * 16 15 5 31 31 H 1.07999 * 120.00071 * 180.27494 * 17 16 15 32 32 H 1.08000 * 120.00090 * 179.83297 * 18 17 16 33 33 H 1.08004 * 120.00340 * 179.97438 * 19 18 17 34 34 H 1.07999 * 120.00460 * 180.02562 * 20 19 18 35 35 H 1.09004 * 109.46562 * 180.10741 * 22 21 2 36 36 H 1.09001 * 109.47271 * 300.09773 * 22 21 2 37 37 H 1.08994 * 109.47500 * 60.10536 * 22 21 2 38 38 H 1.08998 * 117.49913 * 0.02562 * 23 21 2 39 39 H 1.08997 * 117.49844 * 215.00252 * 23 21 2 40 40 H 1.08995 * 117.49790 * 107.47395 * 24 23 21 41 41 H 1.08994 * 117.49905 * 252.47147 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 2.0824 0.2227 2.3469 6 1 1.2576 0.9330 2.2906 7 6 3.3910 0.9696 2.3228 8 1 4.3205 0.4347 2.4506 9 6 3.4018 2.3359 2.1374 10 7 4.5453 2.9745 2.0198 11 14 1.7919 3.2795 2.0533 12 1 1.3375 3.6067 3.4287 13 1 1.9937 4.5353 1.2868 14 1 0.7647 2.4469 1.3776 15 6 1.9786 -0.5675 3.6259 16 6 2.7111 -1.7294 3.7818 17 6 2.6192 -2.4519 4.9568 18 6 1.7878 -2.0174 5.9722 19 6 1.0513 -0.8583 5.8141 20 6 1.1467 -0.1334 4.6410 21 6 2.0400 -0.7213 -1.2492 22 6 2.1622 -2.2417 -1.1300 23 6 1.6357 -0.1495 -2.6096 24 6 3.0744 0.0054 -2.1125 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 2.9173 -1.1204 1.0288 29 1 4.5529 3.9357 1.8898 30 1 3.3581 -2.0707 2.9873 31 1 3.1948 -3.3573 5.0805 32 1 1.7139 -2.5833 6.8891 33 1 0.4014 -0.5190 6.6072 34 1 0.5716 0.7724 4.5176 35 1 2.5336 -2.6511 -2.0695 36 1 2.8564 -2.4885 -0.3266 37 1 1.1840 -2.6686 -0.9090 38 1 1.0067 0.7406 -2.6146 39 1 1.4565 -0.8566 -3.4195 40 1 3.8416 -0.6001 -2.5951 41 1 3.3917 0.9973 -1.7909 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706902894.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:24 Heat of formation + Delta-G solvation = 41.635789 kcal Electronic energy + Delta-G solvation = -19905.996395 eV Core-core repulsion = 17172.010281 eV Total energy + Delta-G solvation = -2733.986113 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.85839 -38.13739 -35.12993 -32.37739 -31.11204 -30.18387 -28.54157 -28.15986 -26.21039 -23.27793 -22.16430 -21.86232 -21.58923 -19.62346 -18.29734 -17.12894 -16.24018 -15.38427 -14.82961 -14.81689 -14.23018 -13.95475 -13.56052 -13.13878 -12.80879 -12.69759 -12.66621 -12.19181 -12.12768 -11.86551 -11.74485 -11.66636 -11.25446 -11.12188 -11.03351 -10.86986 -10.48140 -10.36410 -10.03493 -9.84583 -9.72249 -9.33691 -9.17550 -8.74712 -8.20192 -7.90018 -7.27321 -6.24573 -4.26165 2.12977 2.20261 3.16237 3.23255 3.25911 4.14188 4.25116 4.55942 4.94414 5.11514 5.17336 5.29869 5.41804 5.53110 5.54755 5.59925 5.72879 5.92790 5.95802 5.99824 6.07924 6.12389 6.20608 6.24417 6.27652 6.30057 6.42864 6.46065 6.51874 6.54718 6.63834 6.72379 6.76108 6.88553 6.94052 7.16099 7.26132 7.43437 7.56495 7.78412 8.06189 8.29652 8.56765 8.81227 9.37437 10.87878 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.015237 B = 0.008851 C = 0.006757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.167978 B = 3162.813358 C = 4142.665436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.125 3.875 3 H 0.050 0.950 4 N -0.677 5.677 5 C 0.199 3.801 6 H 0.054 0.946 7 C -0.531 4.531 8 H 0.077 0.923 9 C 0.081 3.919 10 N -0.888 5.888 11 Si 0.862 3.138 12 H -0.273 1.273 13 H -0.287 1.287 14 H -0.255 1.255 15 C -0.013 4.013 16 C -0.104 4.104 17 C -0.125 4.125 18 C -0.151 4.151 19 C -0.123 4.123 20 C -0.133 4.133 21 C -0.118 4.118 22 C -0.101 4.101 23 C -0.179 4.179 24 C -0.175 4.175 25 H 0.055 0.945 26 H 0.048 0.952 27 H 0.044 0.956 28 H 0.335 0.665 29 H 0.266 0.734 30 H 0.115 0.885 31 H 0.109 0.891 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.043 0.957 36 H 0.065 0.935 37 H 0.059 0.941 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.560 -7.662 -2.670 10.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.014 3.986 3 H 0.068 0.932 4 N -0.308 5.308 5 C 0.092 3.908 6 H 0.072 0.928 7 C -0.570 4.570 8 H 0.095 0.905 9 C -0.124 4.124 10 N -0.525 5.525 11 Si 0.689 3.311 12 H -0.199 1.199 13 H -0.214 1.214 14 H -0.180 1.180 15 C -0.014 4.014 16 C -0.122 4.122 17 C -0.143 4.143 18 C -0.170 4.170 19 C -0.141 4.141 20 C -0.152 4.152 21 C -0.118 4.118 22 C -0.158 4.158 23 C -0.217 4.217 24 C -0.212 4.212 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.154 0.846 29 H 0.076 0.924 30 H 0.133 0.867 31 H 0.127 0.873 32 H 0.125 0.875 33 H 0.127 0.873 34 H 0.126 0.874 35 H 0.062 0.938 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.107 0.893 39 H 0.106 0.894 40 H 0.107 0.893 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -7.090 -7.723 -2.533 10.786 hybrid contribution 0.150 1.398 -0.151 1.414 sum -6.940 -6.325 -2.684 9.766 Atomic orbital electron populations 1.21772 0.95950 1.01280 1.00189 1.20787 0.94006 0.96130 0.87647 0.93244 1.61179 1.32691 1.33217 1.03697 1.18733 0.97151 0.89845 0.85118 0.92798 1.21509 0.92457 0.92823 1.50173 0.90517 1.25090 0.95883 0.97546 0.93830 1.69891 1.25224 1.09123 1.48239 0.87137 0.85108 0.79748 0.79089 1.19867 1.21355 1.17989 1.20254 0.91725 0.92990 0.96432 1.20831 0.99446 0.95154 0.96802 1.21022 0.99284 0.99742 0.94287 1.20832 0.99501 0.97770 0.98853 1.20922 1.00037 0.95850 0.97270 1.20936 1.00198 0.99831 0.94217 1.21650 1.03048 0.95394 0.91743 1.21147 1.01991 0.92031 1.00675 1.22960 0.98558 1.02889 0.97263 1.23094 0.91890 1.02394 1.03813 0.92599 0.93249 0.93700 0.84608 0.92441 0.86737 0.87306 0.87464 0.87335 0.87399 0.93795 0.91655 0.92247 0.89311 0.89414 0.89349 0.88633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.31 9.24 37.16 0.34 -1.97 16 2 C 0.12 2.35 2.52 -67.71 -0.17 2.18 16 3 H 0.05 1.09 5.95 -51.93 -0.31 0.78 16 4 N -0.68 -13.43 5.08 -102.18 -0.52 -13.95 16 5 C 0.20 4.47 1.97 -70.02 -0.14 4.34 16 6 H 0.05 1.26 3.29 -51.93 -0.17 1.09 16 7 C -0.53 -14.00 8.50 -34.44 -0.29 -14.29 16 8 H 0.08 2.24 8.06 -52.49 -0.42 1.81 16 9 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 10 N -0.89 -26.06 13.96 55.43 0.77 -25.28 16 11 Si 0.86 20.56 26.17 -169.99 -4.45 16.11 16 12 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 13 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 14 H -0.26 -5.73 5.68 56.52 0.32 -5.41 16 15 C -0.01 -0.27 4.93 -104.62 -0.52 -0.79 16 16 C -0.10 -2.02 9.28 -39.58 -0.37 -2.39 16 17 C -0.13 -2.14 10.05 -39.58 -0.40 -2.54 16 18 C -0.15 -2.48 10.05 -39.58 -0.40 -2.88 16 19 C -0.12 -2.12 10.05 -39.59 -0.40 -2.52 16 20 C -0.13 -2.65 9.67 -39.58 -0.38 -3.03 16 21 C -0.12 -1.89 1.81 -154.47 -0.28 -2.17 16 22 C -0.10 -1.44 9.15 37.16 0.34 -1.10 16 23 C -0.18 -2.54 9.44 -26.73 -0.25 -2.80 16 24 C -0.17 -2.76 9.89 -26.69 -0.26 -3.03 16 25 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.05 0.91 7.01 -51.93 -0.36 0.54 16 27 H 0.04 0.69 7.29 -51.93 -0.38 0.32 16 28 H 0.34 6.69 6.14 -39.29 -0.24 6.45 16 29 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.11 2.15 7.42 -52.49 -0.39 1.76 16 31 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 32 H 0.11 1.45 8.06 -52.49 -0.42 1.02 16 33 H 0.11 1.58 8.06 -52.48 -0.42 1.15 16 34 H 0.11 2.08 8.00 -52.49 -0.42 1.66 16 35 H 0.04 0.55 8.11 -51.93 -0.42 0.13 16 36 H 0.06 0.96 6.76 -51.93 -0.35 0.60 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.09 1.26 7.61 -51.93 -0.40 0.86 16 39 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 40 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.10 1.70 8.05 -51.93 -0.42 1.28 16 LS Contribution 325.86 15.07 4.91 4.91 Total: -1.00 -28.02 325.86 -9.01 -37.03 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: -6.46 Total: 12.03 kcal Atomic # 6 Polarization: -27.59 SS G_CDS: -3.27 Total: -30.86 kcal Atomic # 7 Polarization: -39.49 SS G_CDS: 0.25 Total: -39.23 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -4.45 Total: 16.11 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.02 -9.01 -37.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706902894.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.669 kcal (2) G-P(sol) polarization free energy of solvation -28.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds