Wall clock time and date at job start Mon Mar 30 2020 06:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.46942 * 2 1 4 4 N 1.46900 * 109.47039 * 119.99729 * 2 1 3 5 5 C 1.46901 * 111.00216 * 274.99804 * 4 2 1 6 6 H 1.08999 * 109.46667 * 35.00127 * 5 4 2 7 7 C 1.50695 * 109.47573 * 275.00384 * 5 4 2 8 8 H 1.08000 * 119.99939 * 295.07139 * 7 5 4 9 9 C 1.37882 * 120.00405 * 115.06464 * 7 5 4 10 10 N 1.31509 * 120.00102 * 184.90501 * 9 7 5 11 11 Si 1.86794 * 119.99425 * 4.90264 * 9 7 5 12 12 H 1.48497 * 109.47241 * 84.71706 * 11 9 7 13 13 H 1.48508 * 109.46902 * 204.71502 * 11 9 7 14 14 H 1.48497 * 109.47605 * 324.71262 * 11 9 7 15 15 C 1.50699 * 109.47169 * 155.00153 * 5 4 2 16 16 C 1.38235 * 119.99670 * 44.78939 * 15 5 4 17 17 C 1.38238 * 119.99465 * 179.78764 * 16 15 5 18 18 C 1.38239 * 120.00251 * 0.44745 * 17 16 15 19 19 C 1.38230 * 119.99841 * 359.80619 * 18 17 16 20 20 C 1.38234 * 120.00239 * 359.97438 * 19 18 17 21 21 C 1.53001 * 109.47291 * 239.99978 * 2 1 3 22 22 C 1.52998 * 115.55885 * 274.31194 * 21 2 1 23 23 C 1.52999 * 117.49819 * 59.99774 * 21 2 1 24 24 C 1.53005 * 60.03191 * 107.50152 * 23 21 2 25 25 H 1.09005 * 109.46942 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47374 * 299.99935 * 1 2 3 27 27 H 1.08995 * 109.47330 * 60.00185 * 1 2 3 28 28 H 1.00901 * 110.99667 * 151.05018 * 4 2 1 29 29 H 0.96996 * 120.00050 * 180.02562 * 10 9 7 30 30 H 1.07994 * 120.00256 * 0.02562 * 16 15 5 31 31 H 1.07999 * 120.00071 * 180.27494 * 17 16 15 32 32 H 1.08000 * 120.00090 * 179.83297 * 18 17 16 33 33 H 1.08004 * 120.00340 * 179.97438 * 19 18 17 34 34 H 1.07999 * 120.00460 * 180.02562 * 20 19 18 35 35 H 1.09004 * 109.46562 * 180.10741 * 22 21 2 36 36 H 1.09001 * 109.47271 * 300.09773 * 22 21 2 37 37 H 1.08994 * 109.47500 * 60.10536 * 22 21 2 38 38 H 1.08998 * 117.49913 * 0.02562 * 23 21 2 39 39 H 1.08997 * 117.49844 * 215.00252 * 23 21 2 40 40 H 1.08995 * 117.49790 * 107.47395 * 24 23 21 41 41 H 1.08994 * 117.49905 * 252.47147 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 2.0824 0.2227 2.3469 6 1 1.2576 0.9330 2.2906 7 6 3.3910 0.9696 2.3228 8 1 4.3205 0.4347 2.4506 9 6 3.4018 2.3359 2.1374 10 7 4.5453 2.9745 2.0198 11 14 1.7919 3.2795 2.0533 12 1 1.3375 3.6067 3.4287 13 1 1.9937 4.5353 1.2868 14 1 0.7647 2.4469 1.3776 15 6 1.9786 -0.5675 3.6259 16 6 2.7111 -1.7294 3.7818 17 6 2.6192 -2.4519 4.9568 18 6 1.7878 -2.0174 5.9722 19 6 1.0513 -0.8583 5.8141 20 6 1.1467 -0.1334 4.6410 21 6 2.0400 -0.7213 -1.2492 22 6 2.1622 -2.2417 -1.1300 23 6 1.6357 -0.1495 -2.6096 24 6 3.0744 0.0054 -2.1125 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 2.9173 -1.1204 1.0288 29 1 4.5529 3.9357 1.8898 30 1 3.3581 -2.0707 2.9873 31 1 3.1948 -3.3573 5.0805 32 1 1.7139 -2.5833 6.8891 33 1 0.4014 -0.5190 6.6072 34 1 0.5716 0.7724 4.5176 35 1 2.5336 -2.6511 -2.0695 36 1 2.8564 -2.4885 -0.3266 37 1 1.1840 -2.6686 -0.9090 38 1 1.0067 0.7406 -2.6146 39 1 1.4565 -0.8566 -3.4195 40 1 3.8416 -0.6001 -2.5951 41 1 3.3917 0.9973 -1.7909 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706902894.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:24 Heat of formation + Delta-G solvation = 26.511244 kcal Electronic energy + Delta-G solvation = -19906.652244 eV Core-core repulsion = 17172.010281 eV Total energy + Delta-G solvation = -2734.641963 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.32288 -39.48216 -36.72168 -34.35687 -32.65166 -31.59810 -30.02943 -29.37827 -28.01906 -24.93699 -23.58775 -23.12887 -22.99418 -21.24993 -19.80901 -19.01341 -17.66274 -16.86843 -16.63065 -16.27041 -15.73214 -15.36536 -14.95933 -14.84413 -14.50039 -14.13213 -14.05002 -13.78960 -13.54733 -13.25632 -13.23340 -13.03868 -12.85901 -12.65605 -12.58311 -12.22353 -11.99599 -11.85896 -11.77756 -11.45468 -11.17847 -11.04767 -10.80666 -10.43890 -9.62343 -9.40355 -8.96545 -8.38950 -6.42550 0.69816 0.76598 1.23047 1.24609 1.32091 2.22293 2.88873 2.94438 3.19071 3.54332 3.84537 4.02356 4.12090 4.17240 4.26532 4.30941 4.40674 4.52200 4.54402 4.62398 4.73251 4.78234 4.85938 4.92149 4.97370 4.99336 5.03062 5.09328 5.15172 5.26572 5.30598 5.31753 5.37530 5.45391 5.49409 5.57457 5.76654 5.82162 5.99791 6.10306 6.34411 6.49160 6.65107 6.83208 7.24676 8.77267 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.015237 B = 0.008851 C = 0.006757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.167978 B = 3162.813358 C = 4142.665436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.119 3.881 3 H 0.011 0.989 4 N -0.663 5.663 5 C 0.209 3.791 6 H 0.046 0.954 7 C -0.522 4.522 8 H 0.035 0.965 9 C 0.028 3.972 10 N -0.938 5.938 11 Si 0.917 3.083 12 H -0.267 1.267 13 H -0.289 1.289 14 H -0.237 1.237 15 C -0.046 4.046 16 C -0.120 4.120 17 C -0.124 4.124 18 C -0.143 4.143 19 C -0.121 4.121 20 C -0.155 4.155 21 C -0.130 4.130 22 C -0.095 4.095 23 C -0.153 4.153 24 C -0.189 4.189 25 H 0.069 0.931 26 H 0.032 0.968 27 H 0.063 0.937 28 H 0.332 0.668 29 H 0.265 0.735 30 H 0.109 0.891 31 H 0.140 0.860 32 H 0.147 0.853 33 H 0.140 0.860 34 H 0.105 0.895 35 H 0.065 0.935 36 H 0.053 0.947 37 H 0.065 0.935 38 H 0.088 0.912 39 H 0.117 0.883 40 H 0.104 0.896 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.716 -9.651 -2.365 13.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.009 3.991 3 H 0.029 0.971 4 N -0.292 5.292 5 C 0.101 3.899 6 H 0.064 0.936 7 C -0.562 4.562 8 H 0.053 0.947 9 C -0.171 4.171 10 N -0.578 5.578 11 Si 0.742 3.258 12 H -0.192 1.192 13 H -0.215 1.215 14 H -0.161 1.161 15 C -0.047 4.047 16 C -0.139 4.139 17 C -0.142 4.142 18 C -0.161 4.161 19 C -0.139 4.139 20 C -0.173 4.173 21 C -0.131 4.131 22 C -0.152 4.152 23 C -0.191 4.191 24 C -0.226 4.226 25 H 0.088 0.912 26 H 0.052 0.948 27 H 0.082 0.918 28 H 0.150 0.850 29 H 0.074 0.926 30 H 0.127 0.873 31 H 0.157 0.843 32 H 0.164 0.836 33 H 0.158 0.842 34 H 0.123 0.877 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.107 0.893 39 H 0.135 0.865 40 H 0.123 0.877 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.267 -9.735 -2.229 13.624 hybrid contribution 0.880 1.905 -0.185 2.106 sum -8.388 -7.830 -2.414 11.726 Atomic orbital electron populations 1.21723 0.94344 1.02188 1.00324 1.20871 0.95280 0.94332 0.88643 0.97077 1.61199 1.32205 1.32163 1.03659 1.18533 0.94257 0.90084 0.87067 0.93648 1.21679 0.92929 0.92845 1.48712 0.94708 1.25814 0.98843 0.98596 0.93876 1.70034 1.27516 1.09335 1.50901 0.86233 0.81795 0.78372 0.79363 1.19240 1.21546 1.16093 1.20228 0.93991 0.94337 0.96188 1.20923 0.99564 0.95296 0.98102 1.21388 0.99240 1.00286 0.93297 1.21318 0.97724 0.97244 0.99784 1.21297 1.00117 0.95654 0.96861 1.21106 1.00600 1.00444 0.95183 1.21646 1.03706 0.96360 0.91351 1.21109 1.02159 0.90434 1.01486 1.23050 0.96534 1.02995 0.96472 1.23069 0.93530 1.01167 1.04866 0.91231 0.94837 0.91830 0.85030 0.92593 0.87327 0.84265 0.83556 0.84202 0.87687 0.91556 0.92820 0.91648 0.89308 0.86465 0.87739 0.91773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.25 9.24 71.98 0.66 -3.58 16 2 C 0.12 4.50 2.52 44.91 0.11 4.61 16 3 H 0.01 0.51 5.95 -2.38 -0.01 0.50 16 4 N -0.66 -26.80 5.08 -477.19 -2.42 -29.22 16 5 C 0.21 9.66 1.97 43.42 0.09 9.74 16 6 H 0.05 2.16 3.29 -2.39 -0.01 2.15 16 7 C -0.52 -29.02 8.50 25.60 0.22 -28.80 16 8 H 0.03 2.17 8.06 -2.91 -0.02 2.15 16 9 C 0.03 1.61 5.47 84.66 0.46 2.07 16 10 N -0.94 -57.98 13.96 21.45 0.30 -57.68 16 11 Si 0.92 43.86 26.17 68.60 1.80 45.66 16 12 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 13 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 14 H -0.24 -10.51 5.68 99.48 0.56 -9.94 16 15 C -0.05 -1.98 4.93 -19.87 -0.10 -2.08 16 16 C -0.12 -4.65 9.28 22.27 0.21 -4.44 16 17 C -0.12 -3.93 10.05 22.27 0.22 -3.71 16 18 C -0.14 -4.14 10.05 22.27 0.22 -3.92 16 19 C -0.12 -3.85 10.05 22.27 0.22 -3.63 16 20 C -0.15 -6.03 9.67 22.27 0.22 -5.82 16 21 C -0.13 -4.05 1.81 -52.16 -0.09 -4.14 16 22 C -0.09 -2.51 9.15 71.98 0.66 -1.85 16 23 C -0.15 -4.01 9.44 30.60 0.29 -3.72 16 24 C -0.19 -5.95 9.89 30.62 0.30 -5.65 16 25 H 0.07 2.10 8.14 -2.38 -0.02 2.09 16 26 H 0.03 1.19 7.01 -2.39 -0.02 1.18 16 27 H 0.06 1.84 7.29 -2.39 -0.02 1.83 16 28 H 0.33 13.75 6.14 -89.69 -0.55 13.20 16 29 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 30 H 0.11 4.18 7.42 -2.91 -0.02 4.16 16 31 H 0.14 3.50 8.06 -2.91 -0.02 3.48 16 32 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 33 H 0.14 3.50 8.06 -2.91 -0.02 3.48 16 34 H 0.10 4.03 8.00 -2.91 -0.02 4.00 16 35 H 0.07 1.46 8.11 -2.39 -0.02 1.44 16 36 H 0.05 1.53 6.76 -2.39 -0.02 1.51 16 37 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.09 2.33 7.61 -2.39 -0.02 2.31 16 39 H 0.12 2.42 8.14 -2.39 -0.02 2.40 16 40 H 0.10 2.89 8.14 -2.39 -0.02 2.87 16 41 H 0.06 2.40 8.05 -2.39 -0.02 2.39 16 Total: -1.00 -63.99 325.86 3.68 -60.32 By element: Atomic # 1 Polarization: 35.53 SS G_CDS: 0.31 Total: 35.84 kcal Atomic # 6 Polarization: -58.61 SS G_CDS: 3.70 Total: -54.92 kcal Atomic # 7 Polarization: -84.78 SS G_CDS: -2.13 Total: -86.90 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 1.80 Total: 45.66 kcal Total: -63.99 3.68 -60.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706902894.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.828 kcal (2) G-P(sol) polarization free energy of solvation -63.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds