Wall clock time and date at job start Mon Mar 30 2020 06:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.46849 * 2 1 4 4 C 1.52994 * 109.46948 * 239.99881 * 2 1 3 5 5 C 1.50705 * 109.47226 * 176.72338 * 4 2 1 6 6 H 1.08006 * 119.99852 * 4.91793 * 5 4 2 7 7 C 1.37878 * 120.00294 * 184.92013 * 5 4 2 8 8 N 1.31510 * 119.99994 * 354.86311 * 7 5 4 9 9 Si 1.86800 * 120.00002 * 174.85942 * 7 5 4 10 10 H 1.48494 * 109.46863 * 94.99595 * 9 7 5 11 11 H 1.48503 * 109.47018 * 214.99635 * 9 7 5 12 12 H 1.48505 * 109.46970 * 334.99509 * 9 7 5 13 13 N 1.46899 * 109.47237 * 119.99863 * 2 1 3 14 14 C 1.46436 * 110.99741 * 63.35388 * 13 2 1 15 15 C 1.53384 * 108.64355 * 181.11410 * 14 13 2 16 16 C 1.53050 * 107.91663 * 68.29053 * 15 14 13 17 17 H 1.09009 * 109.43689 * 72.73899 * 16 15 14 18 18 C 1.53003 * 109.43989 * 192.66156 * 16 15 14 19 19 C 1.50796 * 109.65811 * 312.72046 * 16 15 14 20 20 C 1.38612 * 118.12456 * 195.39803 * 19 16 15 21 21 C 1.38045 * 120.49237 * 180.25294 * 20 19 16 22 22 C 1.38315 * 119.88613 * 0.02562 * 21 20 19 23 23 C 1.37807 * 119.95235 * 359.87161 * 22 21 20 24 24 C 1.38377 * 122.01723 * 15.46523 * 19 16 15 25 25 H 1.09001 * 109.47409 * 300.00212 * 1 2 3 26 26 H 1.09004 * 109.47388 * 60.00155 * 1 2 3 27 27 H 1.09003 * 109.47650 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47890 * 296.72385 * 4 2 1 29 29 H 1.09004 * 109.47378 * 56.72790 * 4 2 1 30 30 H 0.96996 * 120.00117 * 179.97438 * 8 7 5 31 31 H 1.09008 * 109.60202 * 61.37281 * 14 13 2 32 32 H 1.09001 * 109.61027 * 300.86919 * 14 13 2 33 33 H 1.08999 * 109.77444 * 308.68392 * 15 14 13 34 34 H 1.09000 * 109.81460 * 187.92228 * 15 14 13 35 35 H 1.09005 * 109.46754 * 59.99886 * 18 16 15 36 36 H 1.08997 * 109.46875 * 179.97438 * 18 16 15 37 37 H 1.09003 * 109.46928 * 300.00022 * 18 16 15 38 38 H 1.08001 * 119.75358 * 0.25348 * 20 19 16 39 39 H 1.08000 * 120.05853 * 179.97438 * 21 20 19 40 40 H 1.08004 * 120.02300 * 179.85676 * 22 21 20 41 41 H 1.08000 * 119.78210 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5448 -0.6513 -1.2905 6 1 4.0879 -0.2136 -0.4660 7 6 4.2283 -1.1462 -2.3810 8 7 3.5764 -1.7693 -3.3382 9 14 6.0801 -0.9313 -2.4987 10 1 6.7537 -2.1453 -1.9720 11 1 6.4655 -0.7278 -3.9184 12 1 6.4931 0.2502 -1.6994 13 7 2.0197 -0.6925 1.1994 14 6 1.6165 -2.1002 1.1939 15 6 2.1301 -2.7624 2.4786 16 6 1.3530 -2.1701 3.6567 17 1 0.3342 -2.5578 3.6509 18 6 2.0391 -2.5608 4.9673 19 6 1.3180 -0.6673 3.5371 20 6 0.9522 0.0687 4.6533 21 6 0.8988 1.4470 4.5969 22 6 1.2116 2.1012 3.4191 23 6 1.5783 1.3763 2.3059 24 6 1.6363 -0.0176 2.3575 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.7254 -1.7645 -1.2204 29 1 1.6295 -0.2424 -2.1383 30 1 4.0572 -2.1171 -4.1055 31 1 2.0477 -2.6007 0.3269 32 1 0.5294 -2.1693 1.1561 33 1 3.1940 -2.5583 2.5988 34 1 1.9643 -3.8386 2.4313 35 1 3.0584 -2.1746 4.9729 36 1 1.4863 -2.1388 5.8066 37 1 2.0616 -3.6470 5.0558 38 1 0.7071 -0.4400 5.5739 39 1 0.6125 2.0134 5.4707 40 1 1.1683 3.1793 3.3718 41 1 1.8215 1.8900 1.3875 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709979018.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:45 Heat of formation + Delta-G solvation = 19.712888 kcal Electronic energy + Delta-G solvation = -20110.271743 eV Core-core repulsion = 17375.334982 eV Total energy + Delta-G solvation = -2734.936762 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.48626 -36.96604 -35.58209 -32.95572 -31.07895 -30.03095 -29.51510 -27.36457 -27.10532 -23.27206 -23.21105 -22.87141 -21.69238 -19.24883 -18.67475 -16.79347 -16.24237 -15.82210 -15.23262 -14.62937 -14.48503 -13.97410 -13.73441 -13.43855 -13.08847 -12.89378 -12.69675 -12.18834 -12.03476 -11.87272 -11.78323 -11.68220 -11.36358 -11.24882 -11.08628 -10.79103 -10.74697 -10.44488 -10.40112 -10.02369 -9.77051 -9.40347 -9.17159 -8.99720 -8.40187 -8.31409 -7.01457 -5.96959 -3.95660 1.73019 1.84019 3.34845 3.41676 3.46965 4.04208 4.43904 4.51429 4.89406 4.96157 5.17311 5.28054 5.34234 5.39875 5.52667 5.65307 5.68741 5.70134 5.76347 5.79252 5.84990 5.93215 5.95791 6.01251 6.16205 6.25146 6.30532 6.33920 6.41852 6.48524 6.61449 6.66294 6.71875 6.81328 6.84523 6.92308 7.23309 7.47243 7.66139 7.84803 8.00147 8.04293 8.46998 9.11298 9.67421 11.14628 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.022282 B = 0.006357 C = 0.005934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.300456 B = 4403.357444 C = 4717.247622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.086 3.914 3 H 0.081 0.919 4 C 0.025 3.975 5 C -0.500 4.500 6 H 0.062 0.938 7 C 0.054 3.946 8 N -0.900 5.900 9 Si 0.889 3.111 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.274 1.274 13 N -0.465 5.465 14 C 0.057 3.943 15 C -0.118 4.118 16 C -0.047 4.047 17 H 0.072 0.928 18 C -0.141 4.141 19 C -0.137 4.137 20 C -0.091 4.091 21 C -0.172 4.172 22 C -0.096 4.096 23 C -0.168 4.168 24 C 0.154 3.846 25 H 0.047 0.953 26 H 0.060 0.940 27 H 0.053 0.947 28 H 0.020 0.980 29 H 0.026 0.974 30 H 0.258 0.742 31 H 0.103 0.897 32 H 0.040 0.960 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.056 0.944 36 H 0.053 0.947 37 H 0.054 0.946 38 H 0.114 0.886 39 H 0.111 0.889 40 H 0.114 0.886 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.642 1.434 14.088 15.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.019 4.019 3 H 0.099 0.901 4 C -0.012 4.012 5 C -0.539 4.539 6 H 0.080 0.920 7 C -0.146 4.146 8 N -0.540 5.540 9 Si 0.717 3.283 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.199 1.199 13 N -0.175 5.175 14 C -0.069 4.069 15 C -0.156 4.156 16 C -0.065 4.065 17 H 0.090 0.910 18 C -0.198 4.198 19 C -0.140 4.140 20 C -0.110 4.110 21 C -0.192 4.192 22 C -0.115 4.115 23 C -0.189 4.189 24 C 0.053 3.947 25 H 0.066 0.934 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.038 0.962 29 H 0.044 0.956 30 H 0.068 0.932 31 H 0.121 0.879 32 H 0.058 0.942 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.132 0.868 39 H 0.129 0.871 40 H 0.132 0.868 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -6.084 1.281 13.775 15.113 hybrid contribution 0.417 0.143 -0.134 0.461 sum -5.667 1.424 13.642 14.840 Atomic orbital electron populations 1.22501 0.98473 1.01622 1.01438 1.22124 0.90844 0.98902 0.90026 0.90074 1.19306 0.96605 0.95405 0.89891 1.21185 0.91421 1.38253 1.03016 0.91980 1.24997 0.98104 0.95435 0.96049 1.69966 1.35632 1.38235 1.10203 0.86624 0.86173 0.78458 0.77025 1.20941 1.21424 1.19880 1.57962 1.55538 1.03028 1.00935 1.22200 0.97976 0.87259 0.99471 1.21804 1.00955 0.99238 0.93573 1.20034 0.99416 0.91369 0.95699 0.90984 1.21856 1.00866 1.00721 0.96333 1.19428 1.05896 0.95009 0.93688 1.20853 0.99127 0.93816 0.97201 1.20788 1.06071 0.94381 0.97947 1.20850 0.98652 0.99117 0.92868 1.21221 1.05293 0.92756 0.99658 1.18872 0.91998 0.92558 0.91320 0.93364 0.92052 0.92842 0.96152 0.95588 0.93194 0.87881 0.94229 0.90602 0.91156 0.92466 0.92757 0.92714 0.86791 0.87093 0.86785 0.85543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.16 8.58 37.16 0.32 -2.84 16 2 C 0.09 1.74 1.91 -67.72 -0.13 1.61 16 3 H 0.08 1.66 5.88 -51.93 -0.31 1.36 16 4 C 0.02 0.61 4.11 -27.88 -0.11 0.50 16 5 C -0.50 -13.73 8.80 -34.44 -0.30 -14.03 16 6 H 0.06 1.73 7.70 -52.48 -0.40 1.33 16 7 C 0.05 1.53 5.45 -17.82 -0.10 1.43 16 8 N -0.90 -26.53 13.29 55.43 0.74 -25.80 16 9 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 10 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 12 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 13 N -0.47 -9.04 4.17 -163.74 -0.68 -9.72 16 14 C 0.06 1.02 4.68 -3.88 -0.02 1.00 16 15 C -0.12 -1.79 5.50 -26.51 -0.15 -1.94 16 16 C -0.05 -0.64 2.86 -91.70 -0.26 -0.90 16 17 H 0.07 0.93 8.14 -51.92 -0.42 0.51 16 18 C -0.14 -1.62 8.75 37.16 0.32 -1.29 16 19 C -0.14 -2.13 5.41 -104.39 -0.56 -2.69 16 20 C -0.09 -1.26 9.06 -39.51 -0.36 -1.62 16 21 C -0.17 -2.32 10.05 -39.62 -0.40 -2.72 16 22 C -0.10 -1.38 10.03 -39.71 -0.40 -1.78 16 23 C -0.17 -2.81 8.09 -39.23 -0.32 -3.13 16 24 C 0.15 2.72 4.89 -83.85 -0.41 2.31 16 25 H 0.05 0.79 6.62 -51.93 -0.34 0.45 16 26 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 27 H 0.05 0.92 6.46 -51.93 -0.34 0.58 16 28 H 0.02 0.52 6.20 -51.93 -0.32 0.20 16 29 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 31 H 0.10 2.11 6.25 -51.92 -0.32 1.78 16 32 H 0.04 0.68 6.31 -51.93 -0.33 0.35 16 33 H 0.08 1.26 8.10 -51.93 -0.42 0.84 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.05 0.55 6.52 -51.93 -0.34 0.21 16 37 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.11 1.32 6.51 -52.49 -0.34 0.97 16 39 H 0.11 1.22 8.06 -52.49 -0.42 0.79 16 40 H 0.11 1.37 8.06 -52.48 -0.42 0.94 16 41 H 0.13 2.14 5.83 -52.49 -0.31 1.83 16 LS Contribution 312.17 15.07 4.70 4.70 Total: -1.00 -29.22 312.17 -9.42 -38.65 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -6.29 Total: 1.44 kcal Atomic # 6 Polarization: -23.21 SS G_CDS: -2.87 Total: -26.08 kcal Atomic # 7 Polarization: -35.57 SS G_CDS: 0.05 Total: -35.52 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.22 -9.42 -38.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709979018.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.360 kcal (2) G-P(sol) polarization free energy of solvation -29.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds