Wall clock time and date at job start Mon Mar 30 2020 06:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.46849 * 2 1 4 4 C 1.52994 * 109.46948 * 239.99881 * 2 1 3 5 5 C 1.50705 * 109.47226 * 176.72338 * 4 2 1 6 6 H 1.08006 * 119.99852 * 4.91793 * 5 4 2 7 7 C 1.37878 * 120.00294 * 184.92013 * 5 4 2 8 8 N 1.31510 * 119.99994 * 354.86311 * 7 5 4 9 9 Si 1.86800 * 120.00002 * 174.85942 * 7 5 4 10 10 H 1.48494 * 109.46863 * 94.99595 * 9 7 5 11 11 H 1.48503 * 109.47018 * 214.99635 * 9 7 5 12 12 H 1.48505 * 109.46970 * 334.99509 * 9 7 5 13 13 N 1.46899 * 109.47237 * 119.99863 * 2 1 3 14 14 C 1.46436 * 110.99741 * 63.35388 * 13 2 1 15 15 C 1.53384 * 108.64355 * 181.11410 * 14 13 2 16 16 C 1.53050 * 107.91663 * 68.29053 * 15 14 13 17 17 H 1.09009 * 109.43689 * 72.73899 * 16 15 14 18 18 C 1.53003 * 109.43989 * 192.66156 * 16 15 14 19 19 C 1.50796 * 109.65811 * 312.72046 * 16 15 14 20 20 C 1.38612 * 118.12456 * 195.39803 * 19 16 15 21 21 C 1.38045 * 120.49237 * 180.25294 * 20 19 16 22 22 C 1.38315 * 119.88613 * 0.02562 * 21 20 19 23 23 C 1.37807 * 119.95235 * 359.87161 * 22 21 20 24 24 C 1.38377 * 122.01723 * 15.46523 * 19 16 15 25 25 H 1.09001 * 109.47409 * 300.00212 * 1 2 3 26 26 H 1.09004 * 109.47388 * 60.00155 * 1 2 3 27 27 H 1.09003 * 109.47650 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47890 * 296.72385 * 4 2 1 29 29 H 1.09004 * 109.47378 * 56.72790 * 4 2 1 30 30 H 0.96996 * 120.00117 * 179.97438 * 8 7 5 31 31 H 1.09008 * 109.60202 * 61.37281 * 14 13 2 32 32 H 1.09001 * 109.61027 * 300.86919 * 14 13 2 33 33 H 1.08999 * 109.77444 * 308.68392 * 15 14 13 34 34 H 1.09000 * 109.81460 * 187.92228 * 15 14 13 35 35 H 1.09005 * 109.46754 * 59.99886 * 18 16 15 36 36 H 1.08997 * 109.46875 * 179.97438 * 18 16 15 37 37 H 1.09003 * 109.46928 * 300.00022 * 18 16 15 38 38 H 1.08001 * 119.75358 * 0.25348 * 20 19 16 39 39 H 1.08000 * 120.05853 * 179.97438 * 21 20 19 40 40 H 1.08004 * 120.02300 * 179.85676 * 22 21 20 41 41 H 1.08000 * 119.78210 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5448 -0.6513 -1.2905 6 1 4.0879 -0.2136 -0.4660 7 6 4.2283 -1.1462 -2.3810 8 7 3.5764 -1.7693 -3.3382 9 14 6.0801 -0.9313 -2.4987 10 1 6.7537 -2.1453 -1.9720 11 1 6.4655 -0.7278 -3.9184 12 1 6.4931 0.2502 -1.6994 13 7 2.0197 -0.6925 1.1994 14 6 1.6165 -2.1002 1.1939 15 6 2.1301 -2.7624 2.4786 16 6 1.3530 -2.1701 3.6567 17 1 0.3342 -2.5578 3.6509 18 6 2.0391 -2.5608 4.9673 19 6 1.3180 -0.6673 3.5371 20 6 0.9522 0.0687 4.6533 21 6 0.8988 1.4470 4.5969 22 6 1.2116 2.1012 3.4191 23 6 1.5783 1.3763 2.3059 24 6 1.6363 -0.0176 2.3575 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.7254 -1.7645 -1.2204 29 1 1.6295 -0.2424 -2.1383 30 1 4.0572 -2.1171 -4.1055 31 1 2.0477 -2.6007 0.3269 32 1 0.5294 -2.1693 1.1561 33 1 3.1940 -2.5583 2.5988 34 1 1.9643 -3.8386 2.4313 35 1 3.0584 -2.1746 4.9729 36 1 1.4863 -2.1388 5.8066 37 1 2.0616 -3.6470 5.0558 38 1 0.7071 -0.4400 5.5739 39 1 0.6125 2.0134 5.4707 40 1 1.1683 3.1793 3.3718 41 1 1.8215 1.8900 1.3875 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709979018.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:45 Heat of formation + Delta-G solvation = 4.638181 kcal Electronic energy + Delta-G solvation = -20110.925432 eV Core-core repulsion = 17375.334982 eV Total energy + Delta-G solvation = -2735.590450 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.76993 -38.31268 -36.76800 -34.96468 -32.69103 -31.25981 -30.64576 -29.25646 -28.30096 -25.20324 -24.44839 -24.03675 -23.06229 -20.56219 -20.04811 -18.40637 -18.06985 -17.09205 -16.58198 -16.40986 -15.92548 -15.14544 -15.07161 -14.64035 -14.51522 -14.30385 -14.17055 -13.71986 -13.41185 -13.34810 -13.19697 -12.99622 -12.71906 -12.69446 -12.56102 -12.43061 -12.31414 -11.99069 -11.80443 -11.45282 -11.24192 -11.10601 -11.02648 -10.50538 -10.48366 -9.53036 -8.33900 -8.15508 -6.20833 0.59034 0.66470 1.38134 1.38863 1.50719 2.42913 2.81102 3.11682 3.20897 3.77715 3.84465 3.97161 4.03844 4.24720 4.29436 4.34898 4.44165 4.47899 4.53072 4.59944 4.63425 4.73015 4.76075 4.88082 4.92194 5.00283 5.08416 5.12555 5.14652 5.19106 5.28573 5.32421 5.36259 5.47532 5.56159 5.62170 5.73081 5.78334 5.84468 6.10831 6.28141 6.42549 6.66502 6.92218 7.45609 8.95924 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.022282 B = 0.006357 C = 0.005934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.300456 B = 4403.357444 C = 4717.247622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.096 3.904 3 H 0.073 0.927 4 C 0.033 3.967 5 C -0.508 4.508 6 H 0.053 0.947 7 C 0.002 3.998 8 N -0.934 5.934 9 Si 0.953 3.047 10 H -0.278 1.278 11 H -0.282 1.282 12 H -0.270 1.270 13 N -0.486 5.486 14 C 0.060 3.940 15 C -0.112 4.112 16 C -0.044 4.044 17 H 0.086 0.914 18 C -0.135 4.135 19 C -0.144 4.144 20 C -0.091 4.091 21 C -0.164 4.164 22 C -0.099 4.099 23 C -0.188 4.188 24 C 0.124 3.876 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.052 0.948 28 H 0.003 0.997 29 H 0.001 0.999 30 H 0.261 0.739 31 H 0.065 0.935 32 H 0.046 0.954 33 H 0.056 0.944 34 H 0.090 0.910 35 H 0.043 0.957 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.144 0.856 39 H 0.144 0.856 40 H 0.137 0.863 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.050 1.835 17.021 18.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.010 4.010 3 H 0.091 0.909 4 C -0.004 4.004 5 C -0.546 4.546 6 H 0.071 0.929 7 C -0.195 4.195 8 N -0.575 5.575 9 Si 0.779 3.221 10 H -0.204 1.204 11 H -0.207 1.207 12 H -0.194 1.194 13 N -0.196 5.196 14 C -0.067 4.067 15 C -0.150 4.150 16 C -0.062 4.062 17 H 0.104 0.896 18 C -0.192 4.192 19 C -0.148 4.148 20 C -0.109 4.109 21 C -0.183 4.183 22 C -0.117 4.117 23 C -0.209 4.209 24 C 0.024 3.976 25 H 0.080 0.920 26 H 0.084 0.916 27 H 0.071 0.929 28 H 0.021 0.979 29 H 0.019 0.981 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.109 0.891 35 H 0.063 0.937 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.162 0.838 39 H 0.162 0.838 40 H 0.155 0.845 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -6.496 1.693 16.733 18.029 hybrid contribution 0.501 0.060 -0.981 1.103 sum -5.995 1.753 15.752 16.945 Atomic orbital electron populations 1.22338 0.96327 1.01806 1.02216 1.21795 0.92493 0.97728 0.88939 0.90907 1.19126 0.95317 0.94634 0.91310 1.21427 0.92929 1.37617 1.02640 0.92880 1.25785 1.02634 0.95220 0.95823 1.70077 1.37385 1.39239 1.10806 0.85618 0.80811 0.78502 0.77201 1.20366 1.20739 1.19448 1.57920 1.56971 1.03463 1.01296 1.22103 0.98088 0.86909 0.99551 1.21777 0.99908 1.00320 0.93004 1.20073 1.00035 0.90225 0.95913 0.89602 1.21814 1.00029 1.01873 0.95447 1.19739 1.05376 0.96219 0.93439 1.21212 0.97999 0.94179 0.97528 1.21221 1.04074 0.94592 0.98440 1.21144 0.97787 1.00324 0.92452 1.21266 1.06600 0.92717 1.00271 1.19015 0.94299 0.92998 0.91280 0.92043 0.91648 0.92890 0.97879 0.98112 0.93057 0.91618 0.93624 0.92545 0.89143 0.93749 0.90783 0.91160 0.83818 0.83823 0.84535 0.86999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.95 8.58 71.98 0.62 -5.33 16 2 C 0.10 4.05 1.91 44.91 0.09 4.13 16 3 H 0.07 3.14 5.88 -2.39 -0.01 3.13 16 4 C 0.03 1.73 4.11 29.85 0.12 1.85 16 5 C -0.51 -29.01 8.80 25.60 0.23 -28.78 16 6 H 0.05 3.07 7.70 -2.91 -0.02 3.05 16 7 C 0.00 0.14 5.45 84.66 0.46 0.60 16 8 N -0.93 -56.72 13.29 21.45 0.29 -56.44 16 9 Si 0.95 45.69 29.54 68.60 2.03 47.72 16 10 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 11 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 12 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 13 N -0.49 -19.45 4.17 -671.94 -2.80 -22.25 16 14 C 0.06 2.21 4.68 86.52 0.41 2.61 16 15 C -0.11 -3.38 5.50 30.74 0.17 -3.21 16 16 C -0.04 -1.11 2.86 -11.49 -0.03 -1.14 16 17 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 18 C -0.13 -2.65 8.75 71.98 0.63 -2.02 16 19 C -0.14 -4.21 5.41 -19.71 -0.11 -4.31 16 20 C -0.09 -2.17 9.06 22.31 0.20 -1.97 16 21 C -0.16 -3.76 10.05 22.24 0.22 -3.54 16 22 C -0.10 -2.59 10.03 22.19 0.22 -2.37 16 23 C -0.19 -6.17 8.09 22.50 0.18 -5.99 16 24 C 0.12 4.35 4.89 38.30 0.19 4.53 16 25 H 0.06 2.00 6.62 -2.39 -0.02 1.98 16 26 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 27 H 0.05 1.85 6.46 -2.39 -0.02 1.83 16 28 H 0.00 0.17 6.20 -2.39 -0.01 0.15 16 29 H 0.00 0.03 8.14 -2.38 -0.02 0.01 16 30 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 31 H 0.07 2.88 6.25 -2.38 -0.01 2.86 16 32 H 0.05 1.59 6.31 -2.39 -0.02 1.57 16 33 H 0.06 1.90 8.10 -2.39 -0.02 1.88 16 34 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 36 H 0.07 1.17 6.52 -2.39 -0.02 1.16 16 37 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.14 2.55 6.51 -2.91 -0.02 2.54 16 39 H 0.14 2.38 8.06 -2.91 -0.02 2.35 16 40 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 41 H 0.11 3.90 5.83 -2.91 -0.02 3.88 16 Total: -1.00 -64.73 312.17 4.11 -60.63 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: 1.00 Total: 15.28 kcal Atomic # 6 Polarization: -48.53 SS G_CDS: 3.60 Total: -44.94 kcal Atomic # 7 Polarization: -76.17 SS G_CDS: -2.52 Total: -78.69 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -64.73 4.11 -60.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709979018.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.264 kcal (2) G-P(sol) polarization free energy of solvation -64.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds