Wall clock time and date at job start Mon Mar 30 2020 06:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47044 * 2 1 4 4 C 1.52996 * 109.47568 * 119.99498 * 2 1 3 5 5 C 1.50693 * 109.47735 * 186.16109 * 4 2 1 6 6 H 1.08007 * 119.99745 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00643 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99651 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00424 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47202 * 59.99634 * 9 7 5 11 11 H 1.48498 * 109.47273 * 180.02562 * 9 7 5 12 12 H 1.48508 * 109.46767 * 299.99893 * 9 7 5 13 13 N 1.46896 * 109.47267 * 240.00270 * 2 1 3 14 14 C 1.46432 * 110.99738 * 284.61769 * 13 2 1 15 15 C 1.53382 * 108.65878 * 181.14569 * 14 13 2 16 16 C 1.53044 * 107.91859 * 68.27395 * 15 14 13 17 17 H 1.08998 * 109.44117 * 72.75034 * 16 15 14 18 18 C 1.53006 * 109.44210 * 192.64282 * 16 15 14 19 19 C 1.50803 * 109.64911 * 312.69699 * 16 15 14 20 20 C 1.38619 * 118.11886 * 195.46428 * 19 16 15 21 21 C 1.38051 * 120.49182 * 180.24221 * 20 19 16 22 22 C 1.38317 * 119.88395 * 0.04961 * 21 20 19 23 23 C 1.37804 * 119.95303 * 359.86016 * 22 21 20 24 24 C 1.38369 * 122.02127 * 15.51416 * 19 16 15 25 25 H 1.08997 * 109.47310 * 59.99918 * 1 2 3 26 26 H 1.09000 * 109.46909 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.46777 * 300.00067 * 1 2 3 28 28 H 1.08995 * 109.47502 * 306.16852 * 4 2 1 29 29 H 1.09003 * 109.46698 * 66.16088 * 4 2 1 30 30 H 0.97002 * 120.00439 * 180.02562 * 8 7 5 31 31 H 1.09000 * 109.60901 * 61.38772 * 14 13 2 32 32 H 1.09005 * 109.73938 * 300.97376 * 14 13 2 33 33 H 1.09005 * 109.76486 * 308.67248 * 15 14 13 34 34 H 1.09000 * 109.77343 * 187.88493 * 15 14 13 35 35 H 1.08998 * 109.46932 * 59.99999 * 18 16 15 36 36 H 1.08998 * 109.46850 * 180.02562 * 18 16 15 37 37 H 1.08998 * 109.46707 * 300.00437 * 18 16 15 38 38 H 1.08001 * 119.75609 * 0.26125 * 20 19 16 39 39 H 1.07997 * 120.06039 * 180.02562 * 21 20 19 40 40 H 1.07993 * 120.02471 * 179.83987 * 22 21 20 41 41 H 1.08000 * 119.79338 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 1.2492 5 6 3.5393 -0.5904 1.3279 6 1 4.0748 -0.0469 0.5634 7 6 4.2274 -1.1646 2.3756 8 7 3.5754 -1.8268 3.3062 9 14 6.0858 -1.0020 2.4734 10 1 6.4538 0.4348 2.5470 11 1 6.5809 -1.7031 3.6852 12 1 6.7000 -1.6090 1.2652 13 7 2.0197 -0.6924 -1.1994 14 6 1.8693 -2.1429 -1.0661 15 6 2.4215 -2.8118 -2.3311 16 6 3.9381 -2.6071 -2.3483 17 1 4.3988 -3.2447 -1.5938 18 6 4.4861 -2.9752 -3.7286 19 6 4.2584 -1.1641 -2.0496 20 6 5.5348 -0.7054 -2.3360 21 6 5.8824 0.6054 -2.0776 22 6 4.9527 1.4695 -1.5280 23 6 3.6813 1.0212 -1.2424 24 6 3.3229 -0.3025 -1.5044 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 1.5895 -0.2750 2.1358 29 1 1.7696 -1.7757 1.1958 30 1 4.0594 -2.2305 4.0436 31 1 0.8145 -2.3923 -0.9511 32 1 2.4247 -2.4921 -0.1956 33 1 1.9774 -2.3529 -3.2145 34 1 2.1934 -3.8775 -2.3142 35 1 4.0247 -2.3393 -4.4841 36 1 5.5662 -2.8300 -3.7412 37 1 4.2575 -4.0191 -3.9436 38 1 6.2626 -1.3784 -2.7647 39 1 6.8787 0.9555 -2.3039 40 1 5.2230 2.4947 -1.3226 41 1 2.9572 1.6982 -0.8136 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709979019.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:48 Heat of formation + Delta-G solvation = 27.383528 kcal Electronic energy + Delta-G solvation = -20793.224481 eV Core-core repulsion = 18058.620343 eV Total energy + Delta-G solvation = -2734.604138 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.31897 -36.72106 -35.42174 -32.71333 -31.17746 -29.80394 -29.26001 -27.45662 -26.87139 -23.12477 -22.99639 -22.68719 -21.56865 -19.03524 -18.51360 -16.71190 -16.27142 -15.57457 -15.10196 -14.53946 -14.28785 -13.79549 -13.53614 -13.20150 -13.10367 -12.60910 -12.44554 -12.10340 -11.86239 -11.83840 -11.57201 -11.52261 -11.23123 -11.03683 -11.00915 -10.71965 -10.57925 -10.35843 -10.15578 -9.98710 -9.62090 -9.52353 -9.13392 -8.76094 -8.33351 -7.96682 -6.71013 -5.98961 -3.99465 2.10291 2.18973 3.36045 3.38913 3.45274 4.29716 4.49589 4.75964 5.12988 5.17173 5.36896 5.39056 5.45498 5.60774 5.75980 5.82603 5.88995 5.91199 5.95275 6.00076 6.03500 6.11217 6.14224 6.25253 6.35424 6.42068 6.50036 6.53238 6.57423 6.63929 6.73613 6.77540 6.93137 6.98535 7.12271 7.23805 7.42875 7.57477 7.65922 7.95324 8.02093 8.14985 8.40162 9.08648 9.66231 11.12299 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.014550 B = 0.011164 C = 0.008969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.891556 B = 2507.432171 C = 3121.143937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.069 3.931 3 H 0.083 0.917 4 C -0.004 4.004 5 C -0.524 4.524 6 H 0.076 0.924 7 C 0.063 3.937 8 N -0.897 5.897 9 Si 0.881 3.119 10 H -0.277 1.277 11 H -0.290 1.290 12 H -0.274 1.274 13 N -0.484 5.484 14 C 0.050 3.950 15 C -0.114 4.114 16 C -0.047 4.047 17 H 0.077 0.923 18 C -0.139 4.139 19 C -0.123 4.123 20 C -0.095 4.095 21 C -0.170 4.170 22 C -0.102 4.102 23 C -0.150 4.150 24 C 0.181 3.819 25 H 0.048 0.952 26 H 0.049 0.951 27 H 0.055 0.945 28 H 0.021 0.979 29 H 0.025 0.975 30 H 0.259 0.741 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.051 0.949 38 H 0.111 0.889 39 H 0.108 0.892 40 H 0.111 0.889 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.825 0.603 -11.322 11.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.036 4.036 3 H 0.101 0.899 4 C -0.042 4.042 5 C -0.562 4.562 6 H 0.094 0.906 7 C -0.138 4.138 8 N -0.537 5.537 9 Si 0.709 3.291 10 H -0.202 1.202 11 H -0.216 1.216 12 H -0.199 1.199 13 N -0.197 5.197 14 C -0.077 4.077 15 C -0.152 4.152 16 C -0.065 4.065 17 H 0.095 0.905 18 C -0.197 4.197 19 C -0.126 4.126 20 C -0.114 4.114 21 C -0.189 4.189 22 C -0.121 4.121 23 C -0.170 4.170 24 C 0.081 3.919 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.040 0.960 29 H 0.044 0.956 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.129 0.871 39 H 0.126 0.874 40 H 0.129 0.871 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -1.199 0.598 -11.500 11.578 hybrid contribution 1.578 -0.153 0.949 1.847 sum 0.378 0.446 -10.551 10.567 Atomic orbital electron populations 1.21824 0.95942 1.01302 1.00608 1.22215 0.93575 0.98839 0.88948 0.89888 1.19763 0.96589 0.96171 0.91670 1.21607 0.91960 1.33680 1.08922 0.90618 1.24933 0.97822 0.95298 0.95742 1.69964 1.35476 1.35805 1.12442 0.86803 0.86605 0.78411 0.77323 1.20217 1.21615 1.19935 1.58458 1.17550 1.08343 1.35326 1.22220 1.01056 0.86095 0.98284 1.21758 0.94872 0.99978 0.98588 1.19986 0.95978 0.93351 0.97188 0.90488 1.21854 1.00747 1.00549 0.96513 1.19242 0.93357 0.94598 1.05443 1.20780 0.95279 0.95477 0.99822 1.20722 0.99048 0.94386 1.04751 1.20744 0.93523 0.98986 0.98818 1.21009 0.97151 0.95356 1.03499 1.18318 0.87367 0.92862 0.93339 0.93338 0.93174 0.92575 0.96030 0.95643 0.93186 0.91086 0.90347 0.91533 0.91510 0.92762 0.92707 0.92974 0.87119 0.87406 0.87083 0.85954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 9.29 37.16 0.35 -2.00 16 2 C 0.07 1.39 2.36 -67.72 -0.16 1.23 16 3 H 0.08 1.69 5.04 -51.93 -0.26 1.43 16 4 C 0.00 -0.11 3.94 -27.89 -0.11 -0.22 16 5 C -0.52 -14.09 7.86 -34.44 -0.27 -14.36 16 6 H 0.08 2.00 3.95 -52.48 -0.21 1.79 16 7 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 8 N -0.90 -26.57 13.29 55.43 0.74 -25.84 16 9 Si 0.88 22.18 29.54 -169.99 -5.02 17.16 16 10 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 12 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 13 N -0.48 -9.37 4.40 -163.74 -0.72 -10.09 16 14 C 0.05 0.92 4.47 -3.88 -0.02 0.90 16 15 C -0.11 -1.79 5.50 -26.51 -0.15 -1.94 16 16 C -0.05 -0.77 2.86 -91.70 -0.26 -1.04 16 17 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 18 C -0.14 -1.85 8.74 37.16 0.32 -1.52 16 19 C -0.12 -2.34 5.41 -104.38 -0.56 -2.91 16 20 C -0.09 -1.70 9.06 -39.51 -0.36 -2.06 16 21 C -0.17 -2.98 10.05 -39.62 -0.40 -3.38 16 22 C -0.10 -1.84 10.03 -39.71 -0.40 -2.24 16 23 C -0.15 -2.93 6.89 -39.23 -0.27 -3.20 16 24 C 0.18 3.63 3.87 -83.85 -0.32 3.31 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.05 0.83 6.95 -51.93 -0.36 0.47 16 27 H 0.06 0.90 8.14 -51.92 -0.42 0.48 16 28 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.03 0.66 5.92 -51.93 -0.31 0.35 16 30 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.07 1.22 6.91 -51.93 -0.36 0.86 16 32 H 0.08 1.74 5.70 -51.93 -0.30 1.45 16 33 H 0.07 1.01 8.10 -51.93 -0.42 0.59 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.05 0.69 6.52 -51.93 -0.34 0.35 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.11 1.73 6.50 -52.49 -0.34 1.38 16 39 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 40 H 0.11 1.73 8.06 -52.49 -0.42 1.30 16 41 H 0.12 2.30 5.69 -52.49 -0.30 2.00 16 LS Contribution 307.03 15.07 4.63 4.63 Total: -1.00 -29.47 307.03 -9.22 -38.69 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -6.13 Total: 3.19 kcal Atomic # 6 Polarization: -25.03 SS G_CDS: -2.71 Total: -27.73 kcal Atomic # 7 Polarization: -35.95 SS G_CDS: 0.02 Total: -35.93 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.47 -9.22 -38.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709979019.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.072 kcal (2) G-P(sol) polarization free energy of solvation -29.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds