Wall clock time and date at job start Mon Mar 30 2020 06:15:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09000 * 109.47044 * 2 1
4 4 C 1.52996 * 109.47568 * 119.99498 * 2 1 3
5 5 C 1.50693 * 109.47735 * 186.16109 * 4 2 1
6 6 H 1.08007 * 119.99745 * 0.02562 * 5 4 2
7 7 C 1.37876 * 120.00643 * 180.02562 * 5 4 2
8 8 N 1.31514 * 119.99651 * 0.02562 * 7 5 4
9 9 Si 1.86799 * 120.00424 * 180.02562 * 7 5 4
10 10 H 1.48502 * 109.47202 * 59.99634 * 9 7 5
11 11 H 1.48498 * 109.47273 * 180.02562 * 9 7 5
12 12 H 1.48508 * 109.46767 * 299.99893 * 9 7 5
13 13 N 1.46896 * 109.47267 * 240.00270 * 2 1 3
14 14 C 1.46432 * 110.99738 * 284.61769 * 13 2 1
15 15 C 1.53382 * 108.65878 * 181.14569 * 14 13 2
16 16 C 1.53044 * 107.91859 * 68.27395 * 15 14 13
17 17 H 1.08998 * 109.44117 * 72.75034 * 16 15 14
18 18 C 1.53006 * 109.44210 * 192.64282 * 16 15 14
19 19 C 1.50803 * 109.64911 * 312.69699 * 16 15 14
20 20 C 1.38619 * 118.11886 * 195.46428 * 19 16 15
21 21 C 1.38051 * 120.49182 * 180.24221 * 20 19 16
22 22 C 1.38317 * 119.88395 * 0.04961 * 21 20 19
23 23 C 1.37804 * 119.95303 * 359.86016 * 22 21 20
24 24 C 1.38369 * 122.02127 * 15.51416 * 19 16 15
25 25 H 1.08997 * 109.47310 * 59.99918 * 1 2 3
26 26 H 1.09000 * 109.46909 * 180.02562 * 1 2 3
27 27 H 1.09008 * 109.46777 * 300.00067 * 1 2 3
28 28 H 1.08995 * 109.47502 * 306.16852 * 4 2 1
29 29 H 1.09003 * 109.46698 * 66.16088 * 4 2 1
30 30 H 0.97002 * 120.00439 * 180.02562 * 8 7 5
31 31 H 1.09000 * 109.60901 * 61.38772 * 14 13 2
32 32 H 1.09005 * 109.73938 * 300.97376 * 14 13 2
33 33 H 1.09005 * 109.76486 * 308.67248 * 15 14 13
34 34 H 1.09000 * 109.77343 * 187.88493 * 15 14 13
35 35 H 1.08998 * 109.46932 * 59.99999 * 18 16 15
36 36 H 1.08998 * 109.46850 * 180.02562 * 18 16 15
37 37 H 1.08998 * 109.46707 * 300.00437 * 18 16 15
38 38 H 1.08001 * 119.75609 * 0.26125 * 20 19 16
39 39 H 1.07997 * 120.06039 * 180.02562 * 21 20 19
40 40 H 1.07993 * 120.02471 * 179.83987 * 22 21 20
41 41 H 1.08000 * 119.79338 * 180.02562 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0401 -0.7211 1.2492
5 6 3.5393 -0.5904 1.3279
6 1 4.0748 -0.0469 0.5634
7 6 4.2274 -1.1646 2.3756
8 7 3.5754 -1.8268 3.3062
9 14 6.0858 -1.0020 2.4734
10 1 6.4538 0.4348 2.5470
11 1 6.5809 -1.7031 3.6852
12 1 6.7000 -1.6090 1.2652
13 7 2.0197 -0.6924 -1.1994
14 6 1.8693 -2.1429 -1.0661
15 6 2.4215 -2.8118 -2.3311
16 6 3.9381 -2.6071 -2.3483
17 1 4.3988 -3.2447 -1.5938
18 6 4.4861 -2.9752 -3.7286
19 6 4.2584 -1.1641 -2.0496
20 6 5.5348 -0.7054 -2.3360
21 6 5.8824 0.6054 -2.0776
22 6 4.9527 1.4695 -1.5280
23 6 3.6813 1.0212 -1.2424
24 6 3.3229 -0.3025 -1.5044
25 1 -0.3634 0.5138 -0.8899
26 1 -0.3633 -1.0277 0.0005
27 1 -0.3633 0.5139 0.8901
28 1 1.5895 -0.2750 2.1358
29 1 1.7696 -1.7757 1.1958
30 1 4.0594 -2.2305 4.0436
31 1 0.8145 -2.3923 -0.9511
32 1 2.4247 -2.4921 -0.1956
33 1 1.9774 -2.3529 -3.2145
34 1 2.1934 -3.8775 -2.3142
35 1 4.0247 -2.3393 -4.4841
36 1 5.5662 -2.8300 -3.7412
37 1 4.2575 -4.0191 -3.9436
38 1 6.2626 -1.3784 -2.7647
39 1 6.8787 0.9555 -2.3039
40 1 5.2230 2.4947 -1.3226
41 1 2.9572 1.6982 -0.8136
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000709979019.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:15:48
Heat of formation + Delta-G solvation = 27.383528 kcal
Electronic energy + Delta-G solvation = -20793.224481 eV
Core-core repulsion = 18058.620343 eV
Total energy + Delta-G solvation = -2734.604138 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 259.163 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-40.31897 -36.72106 -35.42174 -32.71333 -31.17746 -29.80394 -29.26001 -27.45662
-26.87139 -23.12477 -22.99639 -22.68719 -21.56865 -19.03524 -18.51360 -16.71190
-16.27142 -15.57457 -15.10196 -14.53946 -14.28785 -13.79549 -13.53614 -13.20150
-13.10367 -12.60910 -12.44554 -12.10340 -11.86239 -11.83840 -11.57201 -11.52261
-11.23123 -11.03683 -11.00915 -10.71965 -10.57925 -10.35843 -10.15578 -9.98710
-9.62090 -9.52353 -9.13392 -8.76094 -8.33351 -7.96682 -6.71013 -5.98961
-3.99465 2.10291 2.18973 3.36045 3.38913 3.45274 4.29716 4.49589
4.75964 5.12988 5.17173 5.36896 5.39056 5.45498 5.60774 5.75980
5.82603 5.88995 5.91199 5.95275 6.00076 6.03500 6.11217 6.14224
6.25253 6.35424 6.42068 6.50036 6.53238 6.57423 6.63929 6.73613
6.77540 6.93137 6.98535 7.12271 7.23805 7.42875 7.57477 7.65922
7.95324 8.02093 8.14985 8.40162 9.08648 9.66231 11.12299
Molecular weight = 259.16amu
Principal moments of inertia in cm(-1)
A = 0.014550 B = 0.011164 C = 0.008969
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1923.891556 B = 2507.432171 C = 3121.143937
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C 0.069 3.931
3 H 0.083 0.917
4 C -0.004 4.004
5 C -0.524 4.524
6 H 0.076 0.924
7 C 0.063 3.937
8 N -0.897 5.897
9 Si 0.881 3.119
10 H -0.277 1.277
11 H -0.290 1.290
12 H -0.274 1.274
13 N -0.484 5.484
14 C 0.050 3.950
15 C -0.114 4.114
16 C -0.047 4.047
17 H 0.077 0.923
18 C -0.139 4.139
19 C -0.123 4.123
20 C -0.095 4.095
21 C -0.170 4.170
22 C -0.102 4.102
23 C -0.150 4.150
24 C 0.181 3.819
25 H 0.048 0.952
26 H 0.049 0.951
27 H 0.055 0.945
28 H 0.021 0.979
29 H 0.025 0.975
30 H 0.259 0.741
31 H 0.071 0.929
32 H 0.078 0.922
33 H 0.066 0.934
34 H 0.066 0.934
35 H 0.053 0.947
36 H 0.054 0.946
37 H 0.051 0.949
38 H 0.111 0.889
39 H 0.108 0.892
40 H 0.111 0.889
41 H 0.123 0.877
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.825 0.603 -11.322 11.368
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C -0.036 4.036
3 H 0.101 0.899
4 C -0.042 4.042
5 C -0.562 4.562
6 H 0.094 0.906
7 C -0.138 4.138
8 N -0.537 5.537
9 Si 0.709 3.291
10 H -0.202 1.202
11 H -0.216 1.216
12 H -0.199 1.199
13 N -0.197 5.197
14 C -0.077 4.077
15 C -0.152 4.152
16 C -0.065 4.065
17 H 0.095 0.905
18 C -0.197 4.197
19 C -0.126 4.126
20 C -0.114 4.114
21 C -0.189 4.189
22 C -0.121 4.121
23 C -0.170 4.170
24 C 0.081 3.919
25 H 0.067 0.933
26 H 0.068 0.932
27 H 0.074 0.926
28 H 0.040 0.960
29 H 0.044 0.956
30 H 0.068 0.932
31 H 0.089 0.911
32 H 0.097 0.903
33 H 0.085 0.915
34 H 0.085 0.915
35 H 0.072 0.928
36 H 0.073 0.927
37 H 0.070 0.930
38 H 0.129 0.871
39 H 0.126 0.874
40 H 0.129 0.871
41 H 0.140 0.860
Dipole moment (debyes) X Y Z Total
from point charges -1.199 0.598 -11.500 11.578
hybrid contribution 1.578 -0.153 0.949 1.847
sum 0.378 0.446 -10.551 10.567
Atomic orbital electron populations
1.21824 0.95942 1.01302 1.00608 1.22215 0.93575 0.98839 0.88948
0.89888 1.19763 0.96589 0.96171 0.91670 1.21607 0.91960 1.33680
1.08922 0.90618 1.24933 0.97822 0.95298 0.95742 1.69964 1.35476
1.35805 1.12442 0.86803 0.86605 0.78411 0.77323 1.20217 1.21615
1.19935 1.58458 1.17550 1.08343 1.35326 1.22220 1.01056 0.86095
0.98284 1.21758 0.94872 0.99978 0.98588 1.19986 0.95978 0.93351
0.97188 0.90488 1.21854 1.00747 1.00549 0.96513 1.19242 0.93357
0.94598 1.05443 1.20780 0.95279 0.95477 0.99822 1.20722 0.99048
0.94386 1.04751 1.20744 0.93523 0.98986 0.98818 1.21009 0.97151
0.95356 1.03499 1.18318 0.87367 0.92862 0.93339 0.93338 0.93174
0.92575 0.96030 0.95643 0.93186 0.91086 0.90347 0.91533 0.91510
0.92762 0.92707 0.92974 0.87119 0.87406 0.87083 0.85954
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.35 9.29 37.16 0.35 -2.00 16
2 C 0.07 1.39 2.36 -67.72 -0.16 1.23 16
3 H 0.08 1.69 5.04 -51.93 -0.26 1.43 16
4 C 0.00 -0.11 3.94 -27.89 -0.11 -0.22 16
5 C -0.52 -14.09 7.86 -34.44 -0.27 -14.36 16
6 H 0.08 2.00 3.95 -52.48 -0.21 1.79 16
7 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16
8 N -0.90 -26.57 13.29 55.43 0.74 -25.84 16
9 Si 0.88 22.18 29.54 -169.99 -5.02 17.16 16
10 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16
11 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16
12 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16
13 N -0.48 -9.37 4.40 -163.74 -0.72 -10.09 16
14 C 0.05 0.92 4.47 -3.88 -0.02 0.90 16
15 C -0.11 -1.79 5.50 -26.51 -0.15 -1.94 16
16 C -0.05 -0.77 2.86 -91.70 -0.26 -1.04 16
17 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16
18 C -0.14 -1.85 8.74 37.16 0.32 -1.52 16
19 C -0.12 -2.34 5.41 -104.38 -0.56 -2.91 16
20 C -0.09 -1.70 9.06 -39.51 -0.36 -2.06 16
21 C -0.17 -2.98 10.05 -39.62 -0.40 -3.38 16
22 C -0.10 -1.84 10.03 -39.71 -0.40 -2.24 16
23 C -0.15 -2.93 6.89 -39.23 -0.27 -3.20 16
24 C 0.18 3.63 3.87 -83.85 -0.32 3.31 16
25 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16
26 H 0.05 0.83 6.95 -51.93 -0.36 0.47 16
27 H 0.06 0.90 8.14 -51.92 -0.42 0.48 16
28 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16
29 H 0.03 0.66 5.92 -51.93 -0.31 0.35 16
30 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16
31 H 0.07 1.22 6.91 -51.93 -0.36 0.86 16
32 H 0.08 1.74 5.70 -51.93 -0.30 1.45 16
33 H 0.07 1.01 8.10 -51.93 -0.42 0.59 16
34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16
35 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16
36 H 0.05 0.69 6.52 -51.93 -0.34 0.35 16
37 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16
38 H 0.11 1.73 6.50 -52.49 -0.34 1.38 16
39 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16
40 H 0.11 1.73 8.06 -52.49 -0.42 1.30 16
41 H 0.12 2.30 5.69 -52.49 -0.30 2.00 16
LS Contribution 307.03 15.07 4.63 4.63
Total: -1.00 -29.47 307.03 -9.22 -38.69
By element:
Atomic # 1 Polarization: 9.32 SS G_CDS: -6.13 Total: 3.19 kcal
Atomic # 6 Polarization: -25.03 SS G_CDS: -2.71 Total: -27.73 kcal
Atomic # 7 Polarization: -35.95 SS G_CDS: 0.02 Total: -35.93 kcal
Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal
Total LS contribution 4.63 Total: 4.63 kcal
Total: -29.47 -9.22 -38.69 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000709979019.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 66.072 kcal
(2) G-P(sol) polarization free energy of solvation -29.474 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.599 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.215 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.689 kcal
(6) G-S(sol) free energy of system = (1) + (5) 27.384 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds