Wall clock time and date at job start Mon Mar 30 2020 06:15:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09000 * 109.47044 * 2 1
4 4 C 1.52996 * 109.47568 * 119.99498 * 2 1 3
5 5 C 1.50693 * 109.47735 * 186.16109 * 4 2 1
6 6 H 1.08007 * 119.99745 * 0.02562 * 5 4 2
7 7 C 1.37876 * 120.00643 * 180.02562 * 5 4 2
8 8 N 1.31514 * 119.99651 * 0.02562 * 7 5 4
9 9 Si 1.86799 * 120.00424 * 180.02562 * 7 5 4
10 10 H 1.48502 * 109.47202 * 59.99634 * 9 7 5
11 11 H 1.48498 * 109.47273 * 180.02562 * 9 7 5
12 12 H 1.48508 * 109.46767 * 299.99893 * 9 7 5
13 13 N 1.46896 * 109.47267 * 240.00270 * 2 1 3
14 14 C 1.46432 * 110.99738 * 284.61769 * 13 2 1
15 15 C 1.53382 * 108.65878 * 181.14569 * 14 13 2
16 16 C 1.53044 * 107.91859 * 68.27395 * 15 14 13
17 17 H 1.08998 * 109.44117 * 72.75034 * 16 15 14
18 18 C 1.53006 * 109.44210 * 192.64282 * 16 15 14
19 19 C 1.50803 * 109.64911 * 312.69699 * 16 15 14
20 20 C 1.38619 * 118.11886 * 195.46428 * 19 16 15
21 21 C 1.38051 * 120.49182 * 180.24221 * 20 19 16
22 22 C 1.38317 * 119.88395 * 0.04961 * 21 20 19
23 23 C 1.37804 * 119.95303 * 359.86016 * 22 21 20
24 24 C 1.38369 * 122.02127 * 15.51416 * 19 16 15
25 25 H 1.08997 * 109.47310 * 59.99918 * 1 2 3
26 26 H 1.09000 * 109.46909 * 180.02562 * 1 2 3
27 27 H 1.09008 * 109.46777 * 300.00067 * 1 2 3
28 28 H 1.08995 * 109.47502 * 306.16852 * 4 2 1
29 29 H 1.09003 * 109.46698 * 66.16088 * 4 2 1
30 30 H 0.97002 * 120.00439 * 180.02562 * 8 7 5
31 31 H 1.09000 * 109.60901 * 61.38772 * 14 13 2
32 32 H 1.09005 * 109.73938 * 300.97376 * 14 13 2
33 33 H 1.09005 * 109.76486 * 308.67248 * 15 14 13
34 34 H 1.09000 * 109.77343 * 187.88493 * 15 14 13
35 35 H 1.08998 * 109.46932 * 59.99999 * 18 16 15
36 36 H 1.08998 * 109.46850 * 180.02562 * 18 16 15
37 37 H 1.08998 * 109.46707 * 300.00437 * 18 16 15
38 38 H 1.08001 * 119.75609 * 0.26125 * 20 19 16
39 39 H 1.07997 * 120.06039 * 180.02562 * 21 20 19
40 40 H 1.07993 * 120.02471 * 179.83987 * 22 21 20
41 41 H 1.08000 * 119.79338 * 180.02562 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0401 -0.7211 1.2492
5 6 3.5393 -0.5904 1.3279
6 1 4.0748 -0.0469 0.5634
7 6 4.2274 -1.1646 2.3756
8 7 3.5754 -1.8268 3.3062
9 14 6.0858 -1.0020 2.4734
10 1 6.4538 0.4348 2.5470
11 1 6.5809 -1.7031 3.6852
12 1 6.7000 -1.6090 1.2652
13 7 2.0197 -0.6924 -1.1994
14 6 1.8693 -2.1429 -1.0661
15 6 2.4215 -2.8118 -2.3311
16 6 3.9381 -2.6071 -2.3483
17 1 4.3988 -3.2447 -1.5938
18 6 4.4861 -2.9752 -3.7286
19 6 4.2584 -1.1641 -2.0496
20 6 5.5348 -0.7054 -2.3360
21 6 5.8824 0.6054 -2.0776
22 6 4.9527 1.4695 -1.5280
23 6 3.6813 1.0212 -1.2424
24 6 3.3229 -0.3025 -1.5044
25 1 -0.3634 0.5138 -0.8899
26 1 -0.3633 -1.0277 0.0005
27 1 -0.3633 0.5139 0.8901
28 1 1.5895 -0.2750 2.1358
29 1 1.7696 -1.7757 1.1958
30 1 4.0594 -2.2305 4.0436
31 1 0.8145 -2.3923 -0.9511
32 1 2.4247 -2.4921 -0.1956
33 1 1.9774 -2.3529 -3.2145
34 1 2.1934 -3.8775 -2.3142
35 1 4.0247 -2.3393 -4.4841
36 1 5.5662 -2.8300 -3.7412
37 1 4.2575 -4.0191 -3.9436
38 1 6.2626 -1.3784 -2.7647
39 1 6.8787 0.9555 -2.3039
40 1 5.2230 2.4947 -1.3226
41 1 2.9572 1.6982 -0.8136
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000709979019.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:15:48
Heat of formation + Delta-G solvation = 11.868907 kcal
Electronic energy + Delta-G solvation = -20793.897246 eV
Core-core repulsion = 18058.620343 eV
Total energy + Delta-G solvation = -2735.276902 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 259.163 amu
Computer time = 0.40 seconds
Orbital eigenvalues (eV)
-41.77376 -38.21288 -36.77379 -34.75177 -32.74572 -31.18935 -30.63092 -29.37178
-28.16944 -25.03924 -24.39637 -24.05697 -23.06470 -20.46855 -20.01357 -18.43781
-18.09542 -16.98968 -16.74429 -16.29619 -15.83759 -15.18901 -14.96595 -14.72326
-14.48092 -14.31051 -13.95898 -13.47652 -13.44232 -13.26801 -13.24505 -12.88494
-12.69582 -12.58521 -12.51344 -12.40382 -12.29418 -11.97092 -11.73394 -11.50538
-11.17974 -11.09309 -10.94478 -10.53467 -10.35260 -9.40071 -8.25033 -8.15880
-6.20577 0.67899 0.75104 1.33571 1.34765 1.42296 2.40161 2.84929
3.17171 3.34033 3.82332 3.90279 4.00954 4.10119 4.29305 4.38455
4.50800 4.53201 4.60473 4.62718 4.65200 4.78085 4.79603 4.80657
4.86866 5.01052 5.08639 5.09227 5.18739 5.20753 5.29400 5.33993
5.35412 5.43394 5.51221 5.58333 5.60985 5.78469 5.82869 5.86678
6.12446 6.29869 6.39980 6.66389 6.95975 7.47524 8.95433
Molecular weight = 259.16amu
Principal moments of inertia in cm(-1)
A = 0.014550 B = 0.011164 C = 0.008969
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1923.891556 B = 2507.432171 C = 3121.143937
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.131 4.131
2 C 0.075 3.925
3 H 0.081 0.919
4 C 0.004 3.996
5 C -0.520 4.520
6 H 0.082 0.918
7 C 0.010 3.990
8 N -0.934 5.934
9 Si 0.933 3.067
10 H -0.270 1.270
11 H -0.289 1.289
12 H -0.271 1.271
13 N -0.477 5.477
14 C 0.051 3.949
15 C -0.106 4.106
16 C -0.051 4.051
17 H 0.058 0.942
18 C -0.130 4.130
19 C -0.139 4.139
20 C -0.105 4.105
21 C -0.172 4.172
22 C -0.111 4.111
23 C -0.170 4.170
24 C 0.152 3.848
25 H 0.069 0.931
26 H 0.051 0.949
27 H 0.060 0.940
28 H -0.008 1.008
29 H 0.006 0.994
30 H 0.257 0.743
31 H 0.082 0.918
32 H 0.034 0.966
33 H 0.077 0.923
34 H 0.089 0.911
35 H 0.057 0.943
36 H 0.061 0.939
37 H 0.071 0.929
38 H 0.134 0.866
39 H 0.137 0.863
40 H 0.134 0.866
41 H 0.121 0.879
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.081 0.823 -13.372 13.397
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.189 4.189
2 C -0.031 4.031
3 H 0.098 0.902
4 C -0.034 4.034
5 C -0.558 4.558
6 H 0.100 0.900
7 C -0.187 4.187
8 N -0.575 5.575
9 Si 0.760 3.240
10 H -0.195 1.195
11 H -0.215 1.215
12 H -0.196 1.196
13 N -0.190 5.190
14 C -0.075 4.075
15 C -0.143 4.143
16 C -0.069 4.069
17 H 0.076 0.924
18 C -0.187 4.187
19 C -0.142 4.142
20 C -0.124 4.124
21 C -0.191 4.191
22 C -0.130 4.130
23 C -0.190 4.190
24 C 0.053 3.947
25 H 0.088 0.912
26 H 0.070 0.930
27 H 0.079 0.921
28 H 0.011 0.989
29 H 0.024 0.976
30 H 0.066 0.934
31 H 0.100 0.900
32 H 0.052 0.948
33 H 0.095 0.905
34 H 0.107 0.893
35 H 0.076 0.924
36 H 0.080 0.920
37 H 0.090 0.910
38 H 0.152 0.848
39 H 0.154 0.846
40 H 0.152 0.848
41 H 0.139 0.861
Dipole moment (debyes) X Y Z Total
from point charges -0.283 0.830 -13.569 13.598
hybrid contribution 1.319 -0.196 1.570 2.060
sum 1.036 0.635 -12.000 12.061
Atomic orbital electron populations
1.21748 0.93376 1.01839 1.01898 1.22076 0.95648 0.97985 0.87359
0.90164 1.19647 0.95546 0.95328 0.92878 1.22001 0.93281 1.32259
1.08299 0.90001 1.25665 1.01641 0.95563 0.95873 1.70083 1.36859
1.37364 1.13227 0.85953 0.82252 0.78545 0.77263 1.19538 1.21455
1.19605 1.58593 1.17714 1.08474 1.34233 1.22179 1.01203 0.85987
0.98144 1.21744 0.94325 1.01075 0.97187 1.20057 0.96495 0.91691
0.98663 0.92410 1.21778 1.00976 1.01800 0.94168 1.19664 0.93752
0.95717 1.05052 1.21159 0.95356 0.96248 0.99606 1.21143 1.00207
0.94189 1.03559 1.21097 0.93061 1.00379 0.98431 1.21193 0.98074
0.95452 1.04273 1.18616 0.88031 0.93539 0.94561 0.91173 0.93018
0.92112 0.98942 0.97561 0.93426 0.90000 0.94776 0.90462 0.89298
0.92381 0.92043 0.91003 0.84847 0.84551 0.84816 0.86120
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -4.33 9.29 71.98 0.67 -3.66 16
2 C 0.08 3.03 2.36 44.91 0.11 3.14 16
3 H 0.08 3.28 5.04 -2.39 -0.01 3.27 16
4 C 0.00 0.20 3.94 29.84 0.12 0.31 16
5 C -0.52 -28.52 7.86 25.60 0.20 -28.32 16
6 H 0.08 4.35 3.95 -2.91 -0.01 4.34 16
7 C 0.01 0.56 5.46 84.65 0.46 1.02 16
8 N -0.93 -56.84 13.29 21.45 0.28 -56.55 16
9 Si 0.93 45.74 29.54 68.60 2.03 47.76 16
10 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16
11 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16
12 H -0.27 -13.01 7.11 99.48 0.71 -12.31 16
13 N -0.48 -18.33 4.40 -671.96 -2.96 -21.28 16
14 C 0.05 1.90 4.47 86.52 0.39 2.28 16
15 C -0.11 -3.16 5.50 30.74 0.17 -2.99 16
16 C -0.05 -1.60 2.86 -11.49 -0.03 -1.64 16
17 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16
18 C -0.13 -3.07 8.74 71.98 0.63 -2.44 16
19 C -0.14 -5.10 5.41 -19.71 -0.11 -5.21 16
20 C -0.11 -3.53 9.06 22.32 0.20 -3.33 16
21 C -0.17 -5.58 10.05 22.24 0.22 -5.36 16
22 C -0.11 -3.81 10.03 22.19 0.22 -3.59 16
23 C -0.17 -6.51 6.89 22.50 0.16 -6.36 16
24 C 0.15 6.01 3.87 38.30 0.15 6.15 16
25 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16
26 H 0.05 1.67 6.95 -2.39 -0.02 1.66 16
27 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16
28 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16
29 H 0.01 0.34 5.92 -2.39 -0.01 0.32 16
30 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16
31 H 0.08 2.78 6.91 -2.39 -0.02 2.76 16
32 H 0.03 1.57 5.70 -2.38 -0.01 1.55 16
33 H 0.08 2.16 8.10 -2.38 -0.02 2.15 16
34 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16
35 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16
36 H 0.06 1.36 6.52 -2.39 -0.02 1.34 16
37 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16
38 H 0.13 3.76 6.50 -2.91 -0.02 3.74 16
39 H 0.14 3.57 8.06 -2.91 -0.02 3.54 16
40 H 0.13 3.84 8.06 -2.91 -0.02 3.82 16
41 H 0.12 4.53 5.69 -2.91 -0.02 4.51 16
Total: -1.00 -64.06 307.03 3.92 -60.14
By element:
Atomic # 1 Polarization: 18.90 SS G_CDS: 1.01 Total: 19.92 kcal
Atomic # 6 Polarization: -53.53 SS G_CDS: 3.55 Total: -49.98 kcal
Atomic # 7 Polarization: -75.17 SS G_CDS: -2.67 Total: -77.84 kcal
Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.76 kcal
Total: -64.06 3.92 -60.14 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000709979019.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 72.006 kcal
(2) G-P(sol) polarization free energy of solvation -64.058 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.948 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.921 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.137 kcal
(6) G-S(sol) free energy of system = (1) + (5) 11.869 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.40 seconds