Wall clock time and date at job start Mon Mar 30 2020 06:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47044 * 2 1 4 4 C 1.52996 * 109.47568 * 119.99498 * 2 1 3 5 5 C 1.50693 * 109.47735 * 186.16109 * 4 2 1 6 6 H 1.08007 * 119.99745 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00643 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99651 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00424 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47202 * 59.99634 * 9 7 5 11 11 H 1.48498 * 109.47273 * 180.02562 * 9 7 5 12 12 H 1.48508 * 109.46767 * 299.99893 * 9 7 5 13 13 N 1.46896 * 109.47267 * 240.00270 * 2 1 3 14 14 C 1.46432 * 110.99738 * 284.61769 * 13 2 1 15 15 C 1.53382 * 108.65878 * 181.14569 * 14 13 2 16 16 C 1.53044 * 107.91859 * 68.27395 * 15 14 13 17 17 H 1.08998 * 109.44117 * 72.75034 * 16 15 14 18 18 C 1.53006 * 109.44210 * 192.64282 * 16 15 14 19 19 C 1.50803 * 109.64911 * 312.69699 * 16 15 14 20 20 C 1.38619 * 118.11886 * 195.46428 * 19 16 15 21 21 C 1.38051 * 120.49182 * 180.24221 * 20 19 16 22 22 C 1.38317 * 119.88395 * 0.04961 * 21 20 19 23 23 C 1.37804 * 119.95303 * 359.86016 * 22 21 20 24 24 C 1.38369 * 122.02127 * 15.51416 * 19 16 15 25 25 H 1.08997 * 109.47310 * 59.99918 * 1 2 3 26 26 H 1.09000 * 109.46909 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.46777 * 300.00067 * 1 2 3 28 28 H 1.08995 * 109.47502 * 306.16852 * 4 2 1 29 29 H 1.09003 * 109.46698 * 66.16088 * 4 2 1 30 30 H 0.97002 * 120.00439 * 180.02562 * 8 7 5 31 31 H 1.09000 * 109.60901 * 61.38772 * 14 13 2 32 32 H 1.09005 * 109.73938 * 300.97376 * 14 13 2 33 33 H 1.09005 * 109.76486 * 308.67248 * 15 14 13 34 34 H 1.09000 * 109.77343 * 187.88493 * 15 14 13 35 35 H 1.08998 * 109.46932 * 59.99999 * 18 16 15 36 36 H 1.08998 * 109.46850 * 180.02562 * 18 16 15 37 37 H 1.08998 * 109.46707 * 300.00437 * 18 16 15 38 38 H 1.08001 * 119.75609 * 0.26125 * 20 19 16 39 39 H 1.07997 * 120.06039 * 180.02562 * 21 20 19 40 40 H 1.07993 * 120.02471 * 179.83987 * 22 21 20 41 41 H 1.08000 * 119.79338 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 1.2492 5 6 3.5393 -0.5904 1.3279 6 1 4.0748 -0.0469 0.5634 7 6 4.2274 -1.1646 2.3756 8 7 3.5754 -1.8268 3.3062 9 14 6.0858 -1.0020 2.4734 10 1 6.4538 0.4348 2.5470 11 1 6.5809 -1.7031 3.6852 12 1 6.7000 -1.6090 1.2652 13 7 2.0197 -0.6924 -1.1994 14 6 1.8693 -2.1429 -1.0661 15 6 2.4215 -2.8118 -2.3311 16 6 3.9381 -2.6071 -2.3483 17 1 4.3988 -3.2447 -1.5938 18 6 4.4861 -2.9752 -3.7286 19 6 4.2584 -1.1641 -2.0496 20 6 5.5348 -0.7054 -2.3360 21 6 5.8824 0.6054 -2.0776 22 6 4.9527 1.4695 -1.5280 23 6 3.6813 1.0212 -1.2424 24 6 3.3229 -0.3025 -1.5044 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 1.5895 -0.2750 2.1358 29 1 1.7696 -1.7757 1.1958 30 1 4.0594 -2.2305 4.0436 31 1 0.8145 -2.3923 -0.9511 32 1 2.4247 -2.4921 -0.1956 33 1 1.9774 -2.3529 -3.2145 34 1 2.1934 -3.8775 -2.3142 35 1 4.0247 -2.3393 -4.4841 36 1 5.5662 -2.8300 -3.7412 37 1 4.2575 -4.0191 -3.9436 38 1 6.2626 -1.3784 -2.7647 39 1 6.8787 0.9555 -2.3039 40 1 5.2230 2.4947 -1.3226 41 1 2.9572 1.6982 -0.8136 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709979019.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:48 Heat of formation + Delta-G solvation = 11.868907 kcal Electronic energy + Delta-G solvation = -20793.897246 eV Core-core repulsion = 18058.620343 eV Total energy + Delta-G solvation = -2735.276902 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.77376 -38.21288 -36.77379 -34.75177 -32.74572 -31.18935 -30.63092 -29.37178 -28.16944 -25.03924 -24.39637 -24.05697 -23.06470 -20.46855 -20.01357 -18.43781 -18.09542 -16.98968 -16.74429 -16.29619 -15.83759 -15.18901 -14.96595 -14.72326 -14.48092 -14.31051 -13.95898 -13.47652 -13.44232 -13.26801 -13.24505 -12.88494 -12.69582 -12.58521 -12.51344 -12.40382 -12.29418 -11.97092 -11.73394 -11.50538 -11.17974 -11.09309 -10.94478 -10.53467 -10.35260 -9.40071 -8.25033 -8.15880 -6.20577 0.67899 0.75104 1.33571 1.34765 1.42296 2.40161 2.84929 3.17171 3.34033 3.82332 3.90279 4.00954 4.10119 4.29305 4.38455 4.50800 4.53201 4.60473 4.62718 4.65200 4.78085 4.79603 4.80657 4.86866 5.01052 5.08639 5.09227 5.18739 5.20753 5.29400 5.33993 5.35412 5.43394 5.51221 5.58333 5.60985 5.78469 5.82869 5.86678 6.12446 6.29869 6.39980 6.66389 6.95975 7.47524 8.95433 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.014550 B = 0.011164 C = 0.008969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.891556 B = 2507.432171 C = 3121.143937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.075 3.925 3 H 0.081 0.919 4 C 0.004 3.996 5 C -0.520 4.520 6 H 0.082 0.918 7 C 0.010 3.990 8 N -0.934 5.934 9 Si 0.933 3.067 10 H -0.270 1.270 11 H -0.289 1.289 12 H -0.271 1.271 13 N -0.477 5.477 14 C 0.051 3.949 15 C -0.106 4.106 16 C -0.051 4.051 17 H 0.058 0.942 18 C -0.130 4.130 19 C -0.139 4.139 20 C -0.105 4.105 21 C -0.172 4.172 22 C -0.111 4.111 23 C -0.170 4.170 24 C 0.152 3.848 25 H 0.069 0.931 26 H 0.051 0.949 27 H 0.060 0.940 28 H -0.008 1.008 29 H 0.006 0.994 30 H 0.257 0.743 31 H 0.082 0.918 32 H 0.034 0.966 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.134 0.866 39 H 0.137 0.863 40 H 0.134 0.866 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.081 0.823 -13.372 13.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.031 4.031 3 H 0.098 0.902 4 C -0.034 4.034 5 C -0.558 4.558 6 H 0.100 0.900 7 C -0.187 4.187 8 N -0.575 5.575 9 Si 0.760 3.240 10 H -0.195 1.195 11 H -0.215 1.215 12 H -0.196 1.196 13 N -0.190 5.190 14 C -0.075 4.075 15 C -0.143 4.143 16 C -0.069 4.069 17 H 0.076 0.924 18 C -0.187 4.187 19 C -0.142 4.142 20 C -0.124 4.124 21 C -0.191 4.191 22 C -0.130 4.130 23 C -0.190 4.190 24 C 0.053 3.947 25 H 0.088 0.912 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.011 0.989 29 H 0.024 0.976 30 H 0.066 0.934 31 H 0.100 0.900 32 H 0.052 0.948 33 H 0.095 0.905 34 H 0.107 0.893 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.152 0.848 39 H 0.154 0.846 40 H 0.152 0.848 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.283 0.830 -13.569 13.598 hybrid contribution 1.319 -0.196 1.570 2.060 sum 1.036 0.635 -12.000 12.061 Atomic orbital electron populations 1.21748 0.93376 1.01839 1.01898 1.22076 0.95648 0.97985 0.87359 0.90164 1.19647 0.95546 0.95328 0.92878 1.22001 0.93281 1.32259 1.08299 0.90001 1.25665 1.01641 0.95563 0.95873 1.70083 1.36859 1.37364 1.13227 0.85953 0.82252 0.78545 0.77263 1.19538 1.21455 1.19605 1.58593 1.17714 1.08474 1.34233 1.22179 1.01203 0.85987 0.98144 1.21744 0.94325 1.01075 0.97187 1.20057 0.96495 0.91691 0.98663 0.92410 1.21778 1.00976 1.01800 0.94168 1.19664 0.93752 0.95717 1.05052 1.21159 0.95356 0.96248 0.99606 1.21143 1.00207 0.94189 1.03559 1.21097 0.93061 1.00379 0.98431 1.21193 0.98074 0.95452 1.04273 1.18616 0.88031 0.93539 0.94561 0.91173 0.93018 0.92112 0.98942 0.97561 0.93426 0.90000 0.94776 0.90462 0.89298 0.92381 0.92043 0.91003 0.84847 0.84551 0.84816 0.86120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.33 9.29 71.98 0.67 -3.66 16 2 C 0.08 3.03 2.36 44.91 0.11 3.14 16 3 H 0.08 3.28 5.04 -2.39 -0.01 3.27 16 4 C 0.00 0.20 3.94 29.84 0.12 0.31 16 5 C -0.52 -28.52 7.86 25.60 0.20 -28.32 16 6 H 0.08 4.35 3.95 -2.91 -0.01 4.34 16 7 C 0.01 0.56 5.46 84.65 0.46 1.02 16 8 N -0.93 -56.84 13.29 21.45 0.28 -56.55 16 9 Si 0.93 45.74 29.54 68.60 2.03 47.76 16 10 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 11 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 12 H -0.27 -13.01 7.11 99.48 0.71 -12.31 16 13 N -0.48 -18.33 4.40 -671.96 -2.96 -21.28 16 14 C 0.05 1.90 4.47 86.52 0.39 2.28 16 15 C -0.11 -3.16 5.50 30.74 0.17 -2.99 16 16 C -0.05 -1.60 2.86 -11.49 -0.03 -1.64 16 17 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 18 C -0.13 -3.07 8.74 71.98 0.63 -2.44 16 19 C -0.14 -5.10 5.41 -19.71 -0.11 -5.21 16 20 C -0.11 -3.53 9.06 22.32 0.20 -3.33 16 21 C -0.17 -5.58 10.05 22.24 0.22 -5.36 16 22 C -0.11 -3.81 10.03 22.19 0.22 -3.59 16 23 C -0.17 -6.51 6.89 22.50 0.16 -6.36 16 24 C 0.15 6.01 3.87 38.30 0.15 6.15 16 25 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.05 1.67 6.95 -2.39 -0.02 1.66 16 27 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 28 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 29 H 0.01 0.34 5.92 -2.39 -0.01 0.32 16 30 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 31 H 0.08 2.78 6.91 -2.39 -0.02 2.76 16 32 H 0.03 1.57 5.70 -2.38 -0.01 1.55 16 33 H 0.08 2.16 8.10 -2.38 -0.02 2.15 16 34 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.06 1.36 6.52 -2.39 -0.02 1.34 16 37 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.13 3.76 6.50 -2.91 -0.02 3.74 16 39 H 0.14 3.57 8.06 -2.91 -0.02 3.54 16 40 H 0.13 3.84 8.06 -2.91 -0.02 3.82 16 41 H 0.12 4.53 5.69 -2.91 -0.02 4.51 16 Total: -1.00 -64.06 307.03 3.92 -60.14 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: 1.01 Total: 19.92 kcal Atomic # 6 Polarization: -53.53 SS G_CDS: 3.55 Total: -49.98 kcal Atomic # 7 Polarization: -75.17 SS G_CDS: -2.67 Total: -77.84 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.76 kcal Total: -64.06 3.92 -60.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709979019.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.006 kcal (2) G-P(sol) polarization free energy of solvation -64.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds