Wall clock time and date at job start Mon Mar 30 2020 06:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47379 * 2 1 4 4 C 1.53002 * 109.46939 * 239.99202 * 2 1 3 5 5 C 1.50700 * 109.46907 * 173.55545 * 4 2 1 6 6 H 1.07999 * 119.99778 * 3.96049 * 5 4 2 7 7 C 1.37879 * 119.99868 * 183.95473 * 5 4 2 8 8 N 1.31512 * 120.00128 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 119.99768 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47564 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46946 * 120.00481 * 9 7 5 12 12 H 1.48501 * 109.47377 * 240.00354 * 9 7 5 13 13 N 1.46902 * 109.46819 * 119.99591 * 2 1 3 14 14 C 1.46433 * 110.99979 * 73.21370 * 13 2 1 15 15 C 1.53374 * 108.67160 * 178.92737 * 14 13 2 16 16 C 1.53050 * 107.93476 * 291.80145 * 15 14 13 17 17 H 1.09007 * 109.43686 * 287.28755 * 16 15 14 18 18 C 1.53001 * 109.41205 * 167.38393 * 16 15 14 19 19 C 1.50802 * 109.65683 * 47.33779 * 16 15 14 20 20 C 1.38615 * 118.12086 * 164.30474 * 19 16 15 21 21 C 1.38053 * 120.47774 * 179.34768 * 20 19 16 22 22 C 1.38315 * 119.89526 * 0.56638 * 21 20 19 23 23 C 1.37806 * 119.94698 * 359.57278 * 22 21 20 24 24 C 1.38369 * 122.01001 * 344.19040 * 19 16 15 25 25 H 1.09000 * 109.46776 * 300.00749 * 1 2 3 26 26 H 1.09000 * 109.46699 * 59.99979 * 1 2 3 27 27 H 1.08998 * 109.47573 * 180.02562 * 1 2 3 28 28 H 1.08991 * 109.47266 * 293.55802 * 4 2 1 29 29 H 1.09004 * 109.46692 * 53.56021 * 4 2 1 30 30 H 0.96995 * 120.00365 * 179.97438 * 8 7 5 31 31 H 1.09002 * 109.60316 * 59.17180 * 14 13 2 32 32 H 1.08997 * 109.73743 * 298.76126 * 14 13 2 33 33 H 1.09000 * 109.77130 * 172.19255 * 15 14 13 34 34 H 1.09003 * 109.76751 * 51.40357 * 15 14 13 35 35 H 1.09001 * 109.46841 * 299.82582 * 18 16 15 36 36 H 1.08992 * 109.47227 * 59.82616 * 18 16 15 37 37 H 1.08997 * 109.47102 * 179.82803 * 18 16 15 38 38 H 1.07995 * 119.75992 * 359.63794 * 20 19 16 39 39 H 1.08008 * 120.05337 * 180.31865 * 21 20 19 40 40 H 1.07995 * 120.02473 * 179.84363 * 22 21 20 41 41 H 1.08003 * 119.78594 * 180.29259 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5385 -0.5848 -1.3315 6 1 4.0804 -0.0937 -0.5368 7 6 4.2177 -1.0870 -2.4213 8 7 3.5577 -1.6847 -3.3892 9 14 6.0752 -0.9183 -2.5230 10 1 6.5751 -0.2124 -1.3160 11 1 6.6914 -2.2673 -2.5977 12 1 6.4361 -0.1414 -3.7361 13 7 2.0196 -0.6924 1.1995 14 6 1.8223 -2.1391 1.0877 15 6 2.3745 -2.8092 2.3519 16 6 3.8967 -2.6503 2.3431 17 1 4.3259 -3.3100 1.5889 18 6 4.4545 -3.0192 3.7192 19 6 4.2557 -1.2211 2.0225 20 6 5.5483 -0.7969 2.2881 21 6 5.9333 0.4975 2.0013 22 6 5.0215 1.3830 1.4557 23 6 3.7339 0.9691 1.1915 24 6 3.3396 -0.3396 1.4763 25 1 -0.3633 0.5140 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.7739 -1.7769 -1.1933 29 1 1.5855 -0.2785 -2.1354 30 1 4.0354 -2.0376 -4.1560 31 1 2.3539 -2.5141 0.2130 32 1 0.7591 -2.3592 0.9917 33 1 2.1143 -3.8677 2.3518 34 1 1.9587 -2.3267 3.2365 35 1 4.0266 -2.3589 4.4736 36 1 4.1953 -4.0521 3.9513 37 1 5.5389 -2.9093 3.7131 38 1 6.2607 -1.4852 2.7182 39 1 6.9437 0.8193 2.2063 40 1 5.3197 2.3968 1.2328 41 1 3.0255 1.6614 0.7611 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709979020.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:51 Heat of formation + Delta-G solvation = 28.833244 kcal Electronic energy + Delta-G solvation = -20797.093921 eV Core-core repulsion = 18062.552648 eV Total energy + Delta-G solvation = -2734.541273 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.33964 -36.71109 -35.44203 -32.70079 -31.17583 -29.80989 -29.26142 -27.44768 -26.87081 -23.14561 -22.98012 -22.68476 -21.56916 -19.04406 -18.52024 -16.69734 -16.28130 -15.57793 -15.09757 -14.56552 -14.26554 -13.80104 -13.53019 -13.20461 -13.09903 -12.61822 -12.45912 -12.11000 -11.87544 -11.82449 -11.55744 -11.51941 -11.23986 -11.05814 -11.01128 -10.75116 -10.49436 -10.36643 -10.18074 -9.98414 -9.59576 -9.54032 -9.12775 -8.74362 -8.33384 -7.93383 -6.68551 -5.98490 -3.98783 2.11800 2.20501 3.32309 3.40871 3.50117 4.30477 4.50605 4.75401 5.12535 5.16380 5.35858 5.39518 5.45627 5.61825 5.75752 5.82229 5.88552 5.90734 5.94392 6.00435 6.02806 6.11135 6.13511 6.24472 6.34409 6.41705 6.50286 6.51201 6.57458 6.63776 6.72376 6.78170 6.91529 6.98855 7.12999 7.25497 7.43501 7.58067 7.66391 7.95623 8.03068 8.14872 8.40953 9.10380 9.67292 11.12956 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.014756 B = 0.011155 C = 0.008845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.089166 B = 2509.495537 C = 3164.932628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.070 3.930 3 H 0.084 0.916 4 C -0.005 4.005 5 C -0.525 4.525 6 H 0.082 0.918 7 C 0.062 3.938 8 N -0.898 5.898 9 Si 0.877 3.123 10 H -0.264 1.264 11 H -0.287 1.287 12 H -0.287 1.287 13 N -0.485 5.485 14 C 0.050 3.950 15 C -0.114 4.114 16 C -0.047 4.047 17 H 0.077 0.923 18 C -0.139 4.139 19 C -0.125 4.125 20 C -0.097 4.097 21 C -0.167 4.167 22 C -0.102 4.102 23 C -0.145 4.145 24 C 0.180 3.820 25 H 0.048 0.952 26 H 0.056 0.944 27 H 0.049 0.951 28 H 0.022 0.978 29 H 0.024 0.976 30 H 0.257 0.743 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.053 0.947 36 H 0.051 0.949 37 H 0.054 0.946 38 H 0.111 0.889 39 H 0.107 0.893 40 H 0.111 0.889 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.835 0.369 11.533 11.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.035 4.035 3 H 0.101 0.899 4 C -0.043 4.043 5 C -0.563 4.563 6 H 0.099 0.901 7 C -0.139 4.139 8 N -0.537 5.537 9 Si 0.705 3.295 10 H -0.188 1.188 11 H -0.213 1.213 12 H -0.213 1.213 13 N -0.197 5.197 14 C -0.077 4.077 15 C -0.152 4.152 16 C -0.065 4.065 17 H 0.095 0.905 18 C -0.197 4.197 19 C -0.128 4.128 20 C -0.115 4.115 21 C -0.186 4.186 22 C -0.121 4.121 23 C -0.165 4.165 24 C 0.080 3.920 25 H 0.067 0.933 26 H 0.075 0.925 27 H 0.068 0.932 28 H 0.040 0.960 29 H 0.043 0.957 30 H 0.067 0.933 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.129 0.871 39 H 0.125 0.875 40 H 0.129 0.871 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.199 0.401 11.721 11.789 hybrid contribution 1.550 -0.201 -1.025 1.869 sum 0.351 0.200 10.697 10.704 Atomic orbital electron populations 1.21833 0.95935 1.01300 1.00656 1.22202 0.93553 0.98852 0.88927 0.89866 1.19777 0.96727 0.95974 0.91812 1.21816 0.92071 1.36745 1.05689 0.90070 1.24946 0.97818 0.95319 0.95792 1.69984 1.35297 1.39153 1.09311 0.86721 0.86713 0.77833 0.78266 1.18849 1.21289 1.21309 1.58483 1.16130 1.09189 1.35924 1.22204 1.00902 0.86294 0.98264 1.21756 0.94854 1.00011 0.98567 1.19987 0.95766 0.93571 0.97167 0.90513 1.21850 1.00725 1.00549 0.96535 1.19226 0.93366 0.94615 1.05583 1.20765 0.95059 0.95710 0.99982 1.20713 0.98920 0.94486 1.04496 1.20733 0.93504 0.98966 0.98917 1.20990 0.96844 0.95634 1.03044 1.18295 0.87358 0.92941 0.93374 0.93323 0.92534 0.93172 0.95975 0.95740 0.93334 0.90654 0.91002 0.91513 0.91489 0.92757 0.92986 0.92692 0.87122 0.87475 0.87120 0.85943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 9.26 37.16 0.34 -2.01 16 2 C 0.07 1.40 2.37 -67.71 -0.16 1.24 16 3 H 0.08 1.69 5.11 -51.93 -0.27 1.43 16 4 C -0.01 -0.13 3.95 -27.88 -0.11 -0.24 16 5 C -0.53 -14.13 8.04 -34.44 -0.28 -14.41 16 6 H 0.08 2.13 3.57 -52.49 -0.19 1.94 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.90 -26.70 13.29 55.43 0.74 -25.96 16 9 Si 0.88 22.10 29.54 -169.99 -5.02 17.08 16 10 H -0.26 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 12 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 13 N -0.48 -9.34 4.42 -163.74 -0.72 -10.07 16 14 C 0.05 0.91 4.55 -3.88 -0.02 0.89 16 15 C -0.11 -1.77 5.50 -26.51 -0.15 -1.91 16 16 C -0.05 -0.76 2.86 -91.70 -0.26 -1.02 16 17 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 18 C -0.14 -1.82 8.74 37.16 0.32 -1.50 16 19 C -0.12 -2.36 5.41 -104.38 -0.56 -2.92 16 20 C -0.10 -1.73 9.07 -39.51 -0.36 -2.09 16 21 C -0.17 -2.97 10.05 -39.62 -0.40 -3.37 16 22 C -0.10 -1.88 9.98 -39.71 -0.40 -2.28 16 23 C -0.14 -2.85 6.76 -39.23 -0.27 -3.12 16 24 C 0.18 3.62 3.84 -83.85 -0.32 3.29 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.05 0.82 6.85 -51.93 -0.36 0.47 16 28 H 0.02 0.57 5.89 -51.93 -0.31 0.27 16 29 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 31 H 0.08 1.65 5.80 -51.93 -0.30 1.35 16 32 H 0.07 1.21 6.82 -51.93 -0.35 0.86 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.07 1.01 8.10 -51.93 -0.42 0.59 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.05 0.68 6.52 -51.93 -0.34 0.34 16 38 H 0.11 1.71 6.49 -52.49 -0.34 1.37 16 39 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 40 H 0.11 1.76 8.06 -52.49 -0.42 1.33 16 41 H 0.12 2.33 5.67 -52.48 -0.30 2.03 16 LS Contribution 306.62 15.07 4.62 4.62 Total: -1.00 -29.70 306.62 -9.20 -38.90 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -6.11 Total: 3.21 kcal Atomic # 6 Polarization: -25.07 SS G_CDS: -2.71 Total: -27.78 kcal Atomic # 7 Polarization: -36.04 SS G_CDS: 0.01 Total: -36.03 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.70 -9.20 -38.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709979020.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.734 kcal (2) G-P(sol) polarization free energy of solvation -29.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds