Wall clock time and date at job start Mon Mar 30 2020 06:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47379 * 2 1 4 4 C 1.53002 * 109.46939 * 239.99202 * 2 1 3 5 5 C 1.50700 * 109.46907 * 173.55545 * 4 2 1 6 6 H 1.07999 * 119.99778 * 3.96049 * 5 4 2 7 7 C 1.37879 * 119.99868 * 183.95473 * 5 4 2 8 8 N 1.31512 * 120.00128 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 119.99768 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47564 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46946 * 120.00481 * 9 7 5 12 12 H 1.48501 * 109.47377 * 240.00354 * 9 7 5 13 13 N 1.46902 * 109.46819 * 119.99591 * 2 1 3 14 14 C 1.46433 * 110.99979 * 73.21370 * 13 2 1 15 15 C 1.53374 * 108.67160 * 178.92737 * 14 13 2 16 16 C 1.53050 * 107.93476 * 291.80145 * 15 14 13 17 17 H 1.09007 * 109.43686 * 287.28755 * 16 15 14 18 18 C 1.53001 * 109.41205 * 167.38393 * 16 15 14 19 19 C 1.50802 * 109.65683 * 47.33779 * 16 15 14 20 20 C 1.38615 * 118.12086 * 164.30474 * 19 16 15 21 21 C 1.38053 * 120.47774 * 179.34768 * 20 19 16 22 22 C 1.38315 * 119.89526 * 0.56638 * 21 20 19 23 23 C 1.37806 * 119.94698 * 359.57278 * 22 21 20 24 24 C 1.38369 * 122.01001 * 344.19040 * 19 16 15 25 25 H 1.09000 * 109.46776 * 300.00749 * 1 2 3 26 26 H 1.09000 * 109.46699 * 59.99979 * 1 2 3 27 27 H 1.08998 * 109.47573 * 180.02562 * 1 2 3 28 28 H 1.08991 * 109.47266 * 293.55802 * 4 2 1 29 29 H 1.09004 * 109.46692 * 53.56021 * 4 2 1 30 30 H 0.96995 * 120.00365 * 179.97438 * 8 7 5 31 31 H 1.09002 * 109.60316 * 59.17180 * 14 13 2 32 32 H 1.08997 * 109.73743 * 298.76126 * 14 13 2 33 33 H 1.09000 * 109.77130 * 172.19255 * 15 14 13 34 34 H 1.09003 * 109.76751 * 51.40357 * 15 14 13 35 35 H 1.09001 * 109.46841 * 299.82582 * 18 16 15 36 36 H 1.08992 * 109.47227 * 59.82616 * 18 16 15 37 37 H 1.08997 * 109.47102 * 179.82803 * 18 16 15 38 38 H 1.07995 * 119.75992 * 359.63794 * 20 19 16 39 39 H 1.08008 * 120.05337 * 180.31865 * 21 20 19 40 40 H 1.07995 * 120.02473 * 179.84363 * 22 21 20 41 41 H 1.08003 * 119.78594 * 180.29259 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5385 -0.5848 -1.3315 6 1 4.0804 -0.0937 -0.5368 7 6 4.2177 -1.0870 -2.4213 8 7 3.5577 -1.6847 -3.3892 9 14 6.0752 -0.9183 -2.5230 10 1 6.5751 -0.2124 -1.3160 11 1 6.6914 -2.2673 -2.5977 12 1 6.4361 -0.1414 -3.7361 13 7 2.0196 -0.6924 1.1995 14 6 1.8223 -2.1391 1.0877 15 6 2.3745 -2.8092 2.3519 16 6 3.8967 -2.6503 2.3431 17 1 4.3259 -3.3100 1.5889 18 6 4.4545 -3.0192 3.7192 19 6 4.2557 -1.2211 2.0225 20 6 5.5483 -0.7969 2.2881 21 6 5.9333 0.4975 2.0013 22 6 5.0215 1.3830 1.4557 23 6 3.7339 0.9691 1.1915 24 6 3.3396 -0.3396 1.4763 25 1 -0.3633 0.5140 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.7739 -1.7769 -1.1933 29 1 1.5855 -0.2785 -2.1354 30 1 4.0354 -2.0376 -4.1560 31 1 2.3539 -2.5141 0.2130 32 1 0.7591 -2.3592 0.9917 33 1 2.1143 -3.8677 2.3518 34 1 1.9587 -2.3267 3.2365 35 1 4.0266 -2.3589 4.4736 36 1 4.1953 -4.0521 3.9513 37 1 5.5389 -2.9093 3.7131 38 1 6.2607 -1.4852 2.7182 39 1 6.9437 0.8193 2.2063 40 1 5.3197 2.3968 1.2328 41 1 3.0255 1.6614 0.7611 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709979020.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:50 Heat of formation + Delta-G solvation = 13.073397 kcal Electronic energy + Delta-G solvation = -20797.777319 eV Core-core repulsion = 18062.552648 eV Total energy + Delta-G solvation = -2735.224671 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.79438 -38.20308 -36.78957 -34.73979 -32.74022 -31.19315 -30.64053 -29.35608 -28.16549 -25.03791 -24.39489 -24.05489 -23.06496 -20.47159 -20.01756 -18.43089 -18.09715 -16.98606 -16.74349 -16.29970 -15.83254 -15.18238 -14.96756 -14.72292 -14.48522 -14.31693 -13.97823 -13.46910 -13.41945 -13.26409 -13.25719 -12.91913 -12.69587 -12.58863 -12.49476 -12.37286 -12.25791 -11.98003 -11.73116 -11.49767 -11.16657 -11.07938 -10.94304 -10.55001 -10.33687 -9.37954 -8.23420 -8.15437 -6.20196 0.68684 0.75740 1.30715 1.34406 1.47731 2.40833 2.85322 3.17653 3.33412 3.82673 3.90705 4.01123 4.10328 4.29367 4.38665 4.51082 4.52601 4.60112 4.63150 4.65366 4.78427 4.79566 4.81279 4.86435 5.01037 5.09113 5.09657 5.18945 5.20885 5.29629 5.34233 5.36070 5.43464 5.51578 5.59129 5.61218 5.78709 5.83579 5.87918 6.12480 6.30832 6.39886 6.66388 6.97908 7.48356 8.96111 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.014756 B = 0.011155 C = 0.008845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.089166 B = 2509.495537 C = 3164.932628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.076 3.924 3 H 0.080 0.920 4 C 0.003 3.997 5 C -0.522 4.522 6 H 0.090 0.910 7 C 0.007 3.993 8 N -0.936 5.936 9 Si 0.932 3.068 10 H -0.258 1.258 11 H -0.286 1.286 12 H -0.284 1.284 13 N -0.478 5.478 14 C 0.050 3.950 15 C -0.106 4.106 16 C -0.051 4.051 17 H 0.060 0.940 18 C -0.130 4.130 19 C -0.139 4.139 20 C -0.105 4.105 21 C -0.171 4.171 22 C -0.113 4.113 23 C -0.166 4.166 24 C 0.151 3.849 25 H 0.070 0.930 26 H 0.060 0.940 27 H 0.052 0.948 28 H 0.003 0.997 29 H -0.006 1.006 30 H 0.256 0.744 31 H 0.032 0.968 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.056 0.944 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.132 0.868 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.057 0.409 13.652 13.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.030 4.030 3 H 0.098 0.902 4 C -0.035 4.035 5 C -0.560 4.560 6 H 0.108 0.892 7 C -0.190 4.190 8 N -0.578 5.578 9 Si 0.759 3.241 10 H -0.182 1.182 11 H -0.213 1.213 12 H -0.211 1.211 13 N -0.190 5.190 14 C -0.076 4.076 15 C -0.143 4.143 16 C -0.069 4.069 17 H 0.078 0.922 18 C -0.187 4.187 19 C -0.142 4.142 20 C -0.124 4.124 21 C -0.190 4.190 22 C -0.132 4.132 23 C -0.186 4.186 24 C 0.052 3.948 25 H 0.089 0.911 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.022 0.978 29 H 0.012 0.988 30 H 0.065 0.935 31 H 0.051 0.949 32 H 0.102 0.898 33 H 0.108 0.892 34 H 0.095 0.905 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.153 0.847 39 H 0.153 0.847 40 H 0.150 0.850 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.297 0.452 13.861 13.871 hybrid contribution 1.291 -0.195 -1.664 2.115 sum 0.995 0.256 12.197 12.240 Atomic orbital electron populations 1.21756 0.93354 1.01879 1.01923 1.22055 0.95638 0.97975 0.87337 0.90205 1.19662 0.95705 0.95152 0.92984 1.22248 0.93403 1.35121 1.05230 0.89243 1.25697 1.01683 0.95653 0.95933 1.70102 1.36748 1.40863 1.10054 0.85847 0.82279 0.77672 0.78332 1.18156 1.21259 1.21069 1.58611 1.16222 1.09440 1.34777 1.22189 1.01238 0.86004 0.98156 1.21745 0.94286 1.01163 0.97133 1.20066 0.96354 0.91812 0.98677 0.92198 1.21777 1.00972 1.01780 0.94206 1.19661 0.93741 0.95739 1.05056 1.21152 0.95157 0.96403 0.99646 1.21133 1.00097 0.94360 1.03447 1.21081 0.93123 1.00312 0.98652 1.21163 0.97717 0.95798 1.03907 1.18599 0.88040 0.93590 0.94569 0.91131 0.92149 0.92940 0.97845 0.98784 0.93512 0.94946 0.89797 0.89195 0.90478 0.92450 0.90975 0.92004 0.84681 0.84743 0.85006 0.86201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.34 9.26 71.98 0.67 -3.67 16 2 C 0.08 3.06 2.37 44.92 0.11 3.17 16 3 H 0.08 3.27 5.11 -2.39 -0.01 3.26 16 4 C 0.00 0.14 3.95 29.85 0.12 0.26 16 5 C -0.52 -28.60 8.04 25.60 0.21 -28.40 16 6 H 0.09 4.72 3.57 -2.91 -0.01 4.71 16 7 C 0.01 0.41 5.46 84.66 0.46 0.87 16 8 N -0.94 -57.22 13.29 21.45 0.28 -56.94 16 9 Si 0.93 45.72 29.54 68.60 2.03 47.74 16 10 H -0.26 -12.23 7.11 99.48 0.71 -11.52 16 11 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 12 H -0.28 -13.75 7.11 99.48 0.71 -13.05 16 13 N -0.48 -18.23 4.42 -671.95 -2.97 -21.20 16 14 C 0.05 1.84 4.55 86.52 0.39 2.23 16 15 C -0.11 -3.09 5.50 30.74 0.17 -2.92 16 16 C -0.05 -1.57 2.86 -11.49 -0.03 -1.60 16 17 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 18 C -0.13 -3.01 8.74 71.98 0.63 -2.38 16 19 C -0.14 -5.07 5.41 -19.71 -0.11 -5.17 16 20 C -0.11 -3.52 9.07 22.32 0.20 -3.32 16 21 C -0.17 -5.65 10.05 22.24 0.22 -5.42 16 22 C -0.11 -3.96 9.98 22.19 0.22 -3.74 16 23 C -0.17 -6.42 6.76 22.50 0.15 -6.27 16 24 C 0.15 5.98 3.84 38.30 0.15 6.13 16 25 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.05 1.69 6.85 -2.39 -0.02 1.67 16 28 H 0.00 0.18 5.89 -2.39 -0.01 0.17 16 29 H -0.01 -0.35 8.14 -2.38 -0.02 -0.37 16 30 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 31 H 0.03 1.46 5.80 -2.39 -0.01 1.44 16 32 H 0.08 2.78 6.82 -2.39 -0.02 2.76 16 33 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.08 2.12 8.10 -2.39 -0.02 2.10 16 35 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.06 1.33 6.52 -2.39 -0.02 1.32 16 38 H 0.14 3.74 6.49 -2.91 -0.02 3.73 16 39 H 0.13 3.61 8.06 -2.91 -0.02 3.59 16 40 H 0.13 3.91 8.06 -2.91 -0.02 3.88 16 41 H 0.12 4.56 5.67 -2.91 -0.02 4.55 16 Total: -1.00 -64.57 306.62 3.91 -60.65 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: 1.01 Total: 19.97 kcal Atomic # 6 Polarization: -53.78 SS G_CDS: 3.56 Total: -50.23 kcal Atomic # 7 Polarization: -75.46 SS G_CDS: -2.68 Total: -78.14 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.74 kcal Total: -64.57 3.91 -60.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709979020.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.723 kcal (2) G-P(sol) polarization free energy of solvation -64.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds