Wall clock time and date at job start Mon Mar 30 2020 06:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47151 * 2 1 4 4 C 1.53000 * 109.47445 * 120.00468 * 2 1 3 5 5 C 1.50700 * 109.47089 * 182.95681 * 4 2 1 6 6 H 1.07996 * 120.00049 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99718 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99876 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 120.00274 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.47119 * 90.00251 * 9 7 5 11 11 H 1.48500 * 109.47440 * 210.00449 * 9 7 5 12 12 H 1.48502 * 109.46937 * 330.00265 * 9 7 5 13 13 N 1.46906 * 109.46747 * 240.00168 * 2 1 3 14 14 C 1.46424 * 110.99752 * 95.90403 * 13 2 1 15 15 C 1.53391 * 108.65972 * 287.74584 * 14 13 2 16 16 C 1.53049 * 107.91424 * 291.73047 * 15 14 13 17 17 H 1.09001 * 109.43897 * 287.26555 * 16 15 14 18 18 C 1.52996 * 109.41145 * 167.35944 * 16 15 14 19 19 C 1.50801 * 109.64817 * 47.31901 * 16 15 14 20 20 C 1.38619 * 118.11917 * 164.56898 * 19 16 15 21 21 C 1.38053 * 120.49041 * 179.64281 * 20 19 16 22 22 C 1.38318 * 119.88425 * 359.97438 * 21 20 19 23 23 C 1.37804 * 119.95412 * 0.13204 * 22 21 20 24 24 C 1.38376 * 122.01857 * 344.43760 * 19 16 15 25 25 H 1.09004 * 109.46989 * 188.04106 * 1 2 3 26 26 H 1.09002 * 109.47354 * 308.03879 * 1 2 3 27 27 H 1.08998 * 109.47557 * 68.04183 * 1 2 3 28 28 H 1.08997 * 109.46618 * 302.95409 * 4 2 1 29 29 H 1.09001 * 109.47137 * 62.95241 * 4 2 1 30 30 H 0.97000 * 120.00102 * 179.97438 * 8 7 5 31 31 H 1.08999 * 109.60810 * 47.50375 * 14 13 2 32 32 H 1.09005 * 109.60327 * 167.99735 * 14 13 2 33 33 H 1.09003 * 109.77189 * 172.12856 * 15 14 13 34 34 H 1.08999 * 109.81564 * 51.36069 * 15 14 13 35 35 H 1.08999 * 109.46829 * 299.83211 * 18 16 15 36 36 H 1.08994 * 109.47269 * 59.83663 * 18 16 15 37 37 H 1.09002 * 109.47189 * 179.83578 * 18 16 15 38 38 H 1.08008 * 119.75506 * 359.61517 * 20 19 16 39 39 H 1.07997 * 120.05825 * 180.02562 * 21 20 19 40 40 H 1.07996 * 120.02168 * 180.14725 * 22 21 20 41 41 H 1.07998 * 119.79254 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5452 -0.6581 1.2863 6 1 4.0841 -0.1536 0.4980 7 6 4.2343 -1.2436 2.3272 8 7 5.5479 -1.1880 2.3598 9 14 3.3021 -2.1145 3.6917 10 1 3.1227 -3.5446 3.3341 11 1 4.0703 -2.0137 4.9586 12 1 1.9722 -1.4775 3.8673 13 7 2.0195 -0.6925 -1.1995 14 6 2.3270 0.2612 -2.2672 15 6 1.0095 0.8091 -2.8302 16 6 0.2987 -0.3326 -3.5607 17 1 0.8181 -0.5442 -4.4953 18 6 -1.1444 0.0768 -3.8615 19 6 0.3002 -1.5672 -2.6948 20 6 -0.5636 -2.5992 -3.0270 21 6 -0.5974 -3.7548 -2.2724 22 6 0.2362 -3.8868 -1.1765 23 6 1.0961 -2.8643 -0.8389 24 6 1.1325 -1.6920 -1.5964 25 1 -0.3633 -1.0176 0.1438 26 1 -0.3634 0.6332 0.8094 27 1 -0.3634 0.3843 -0.9531 28 1 1.6341 -0.2390 2.1383 29 1 1.7206 -1.7632 1.2230 30 1 6.0327 -1.5996 3.0923 31 1 2.9221 1.0811 -1.8651 32 1 2.8816 -0.2425 -3.0590 33 1 1.2159 1.6211 -3.5275 34 1 0.3826 1.1728 -2.0160 35 1 -1.6647 0.2873 -2.9271 36 1 -1.1461 0.9691 -4.4874 37 1 -1.6508 -0.7346 -4.3844 38 1 -1.2155 -2.4983 -3.8823 39 1 -1.2728 -4.5545 -2.5377 40 1 0.2133 -4.7908 -0.5861 41 1 1.7461 -2.9703 0.0170 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709979021.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:53 Heat of formation + Delta-G solvation = 30.603185 kcal Electronic energy + Delta-G solvation = -20447.251331 eV Core-core repulsion = 17712.786808 eV Total energy + Delta-G solvation = -2734.464523 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.73771 -36.88953 -35.40745 -32.82287 -31.28698 -30.04315 -29.55801 -27.89629 -27.22770 -23.25340 -23.06846 -22.66095 -21.12897 -20.22684 -18.68515 -16.65315 -16.14352 -16.01644 -15.57963 -14.57381 -14.29266 -14.02532 -13.77755 -13.60001 -13.14079 -12.73470 -12.55530 -12.47841 -12.09555 -11.99576 -11.93497 -11.82599 -11.60013 -11.32874 -11.16384 -10.92820 -10.74562 -10.32895 -10.21763 -9.93550 -9.77432 -9.59127 -9.04134 -8.65824 -8.43289 -8.33274 -7.23160 -5.91941 -3.86013 1.74053 1.81486 3.35376 3.43286 3.45727 4.09524 4.36815 4.53712 4.81895 4.85388 5.03113 5.22932 5.38060 5.42432 5.44017 5.52488 5.58191 5.62558 5.69501 5.70841 5.78072 5.85303 5.89916 6.03223 6.08920 6.11852 6.17356 6.25876 6.33499 6.38837 6.53565 6.58379 6.76965 6.79078 6.87152 6.94688 7.10722 7.32646 7.38815 7.76144 7.90248 8.08282 8.69818 9.18117 9.70947 11.22107 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.024327 B = 0.007288 C = 0.006339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.709089 B = 3840.760701 C = 4416.161214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.105 3.895 3 H 0.075 0.925 4 C -0.010 4.010 5 C -0.491 4.491 6 H 0.076 0.924 7 C 0.063 3.937 8 N -0.907 5.907 9 Si 0.870 3.130 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.268 1.268 13 N -0.476 5.476 14 C 0.060 3.940 15 C -0.164 4.164 16 C -0.046 4.046 17 H 0.076 0.924 18 C -0.141 4.141 19 C -0.129 4.129 20 C -0.109 4.109 21 C -0.150 4.150 22 C -0.114 4.114 23 C -0.121 4.121 24 C 0.145 3.855 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.018 0.982 29 H 0.020 0.980 30 H 0.260 0.740 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.056 0.944 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.116 0.884 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.566 0.565 -11.208 17.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.000 4.000 3 H 0.093 0.907 4 C -0.048 4.048 5 C -0.529 4.529 6 H 0.094 0.906 7 C -0.137 4.137 8 N -0.548 5.548 9 Si 0.698 3.302 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.192 1.192 13 N -0.190 5.190 14 C -0.068 4.068 15 C -0.203 4.203 16 C -0.064 4.064 17 H 0.094 0.906 18 C -0.198 4.198 19 C -0.132 4.132 20 C -0.127 4.127 21 C -0.169 4.169 22 C -0.133 4.133 23 C -0.140 4.140 24 C 0.047 3.953 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.036 0.964 29 H 0.038 0.962 30 H 0.070 0.930 31 H 0.101 0.899 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.131 0.869 39 H 0.130 0.870 40 H 0.134 0.866 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -12.930 0.354 -10.936 16.938 hybrid contribution -0.971 -0.310 0.571 1.168 sum -13.901 0.044 -10.365 17.340 Atomic orbital electron populations 1.22812 0.98270 1.02224 1.01353 1.21762 0.90827 0.97358 0.90079 0.90652 1.19828 0.97929 0.95538 0.91467 1.21006 0.89121 1.34722 1.08092 0.90605 1.24988 0.94643 0.96249 0.97808 1.69908 1.06237 1.46074 1.32549 0.86930 0.80432 0.80541 0.82252 1.20457 1.21614 1.19234 1.58539 1.41778 1.12874 1.05823 1.22252 0.95613 0.95237 0.93717 1.22556 0.99048 0.97656 1.01012 1.20001 0.96504 0.92492 0.97419 0.90618 1.21851 0.95642 1.00852 1.01455 1.19861 0.97479 0.96419 0.99446 1.20842 0.98865 0.93452 0.99575 1.20887 1.01016 0.97983 0.96987 1.20975 0.96435 0.98603 0.97244 1.21496 0.99539 0.91920 1.01066 1.18493 0.89944 0.93095 0.93758 0.92325 0.92686 0.92329 0.96389 0.96209 0.93050 0.89878 0.90878 0.91393 0.90300 0.92623 0.92721 0.92536 0.86899 0.86983 0.86561 0.84363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.15 7.83 37.15 0.29 -2.86 16 2 C 0.10 2.04 1.96 -67.71 -0.13 1.91 16 3 H 0.08 1.47 7.44 -51.93 -0.39 1.08 16 4 C -0.01 -0.24 3.49 -27.88 -0.10 -0.34 16 5 C -0.49 -13.75 9.34 -34.44 -0.32 -14.07 16 6 H 0.08 2.31 7.98 -52.49 -0.42 1.89 16 7 C 0.06 1.83 5.47 -17.82 -0.10 1.73 16 8 N -0.91 -28.19 13.96 55.43 0.77 -27.41 16 9 Si 0.87 21.83 27.47 -169.99 -4.67 17.17 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 12 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 13 N -0.48 -9.08 4.05 -163.74 -0.66 -9.74 16 14 C 0.06 0.96 5.73 -3.88 -0.02 0.93 16 15 C -0.16 -2.14 5.02 -26.50 -0.13 -2.27 16 16 C -0.05 -0.58 2.77 -91.70 -0.25 -0.83 16 17 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 18 C -0.14 -1.48 8.74 37.16 0.32 -1.15 16 19 C -0.13 -1.95 4.81 -104.38 -0.50 -2.45 16 20 C -0.11 -1.49 9.07 -39.51 -0.36 -1.85 16 21 C -0.15 -2.08 10.05 -39.62 -0.40 -2.47 16 22 C -0.11 -1.78 10.04 -39.71 -0.40 -2.17 16 23 C -0.12 -2.23 8.06 -39.22 -0.32 -2.54 16 24 C 0.14 2.58 3.41 -83.85 -0.29 2.29 16 25 H 0.06 1.03 6.62 -51.93 -0.34 0.68 16 26 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.06 0.89 4.32 -51.93 -0.22 0.66 16 28 H 0.02 0.43 7.20 -51.93 -0.37 0.05 16 29 H 0.02 0.47 4.71 -51.93 -0.24 0.22 16 30 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 31 H 0.08 1.34 7.71 -51.93 -0.40 0.94 16 32 H 0.07 1.15 8.11 -51.93 -0.42 0.73 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.08 1.07 4.79 -51.93 -0.25 0.82 16 35 H 0.05 0.62 8.02 -51.93 -0.42 0.20 16 36 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.54 6.53 -51.93 -0.34 0.20 16 38 H 0.11 1.29 6.51 -52.48 -0.34 0.94 16 39 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 40 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 41 H 0.14 2.89 5.95 -52.49 -0.31 2.58 16 LS Contribution 304.88 15.07 4.59 4.59 Total: -1.00 -30.50 304.88 -8.84 -39.34 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -6.17 Total: 2.20 kcal Atomic # 6 Polarization: -23.44 SS G_CDS: -2.70 Total: -26.15 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: 0.11 Total: -37.16 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.67 Total: 17.17 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.50 -8.84 -39.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709979021.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.940 kcal (2) G-P(sol) polarization free energy of solvation -30.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds