Wall clock time and date at job start Mon Mar 30 2020 06:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47151 * 2 1 4 4 C 1.53000 * 109.47445 * 120.00468 * 2 1 3 5 5 C 1.50700 * 109.47089 * 182.95681 * 4 2 1 6 6 H 1.07996 * 120.00049 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99718 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99876 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 120.00274 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.47119 * 90.00251 * 9 7 5 11 11 H 1.48500 * 109.47440 * 210.00449 * 9 7 5 12 12 H 1.48502 * 109.46937 * 330.00265 * 9 7 5 13 13 N 1.46906 * 109.46747 * 240.00168 * 2 1 3 14 14 C 1.46424 * 110.99752 * 95.90403 * 13 2 1 15 15 C 1.53391 * 108.65972 * 287.74584 * 14 13 2 16 16 C 1.53049 * 107.91424 * 291.73047 * 15 14 13 17 17 H 1.09001 * 109.43897 * 287.26555 * 16 15 14 18 18 C 1.52996 * 109.41145 * 167.35944 * 16 15 14 19 19 C 1.50801 * 109.64817 * 47.31901 * 16 15 14 20 20 C 1.38619 * 118.11917 * 164.56898 * 19 16 15 21 21 C 1.38053 * 120.49041 * 179.64281 * 20 19 16 22 22 C 1.38318 * 119.88425 * 359.97438 * 21 20 19 23 23 C 1.37804 * 119.95412 * 0.13204 * 22 21 20 24 24 C 1.38376 * 122.01857 * 344.43760 * 19 16 15 25 25 H 1.09004 * 109.46989 * 188.04106 * 1 2 3 26 26 H 1.09002 * 109.47354 * 308.03879 * 1 2 3 27 27 H 1.08998 * 109.47557 * 68.04183 * 1 2 3 28 28 H 1.08997 * 109.46618 * 302.95409 * 4 2 1 29 29 H 1.09001 * 109.47137 * 62.95241 * 4 2 1 30 30 H 0.97000 * 120.00102 * 179.97438 * 8 7 5 31 31 H 1.08999 * 109.60810 * 47.50375 * 14 13 2 32 32 H 1.09005 * 109.60327 * 167.99735 * 14 13 2 33 33 H 1.09003 * 109.77189 * 172.12856 * 15 14 13 34 34 H 1.08999 * 109.81564 * 51.36069 * 15 14 13 35 35 H 1.08999 * 109.46829 * 299.83211 * 18 16 15 36 36 H 1.08994 * 109.47269 * 59.83663 * 18 16 15 37 37 H 1.09002 * 109.47189 * 179.83578 * 18 16 15 38 38 H 1.08008 * 119.75506 * 359.61517 * 20 19 16 39 39 H 1.07997 * 120.05825 * 180.02562 * 21 20 19 40 40 H 1.07996 * 120.02168 * 180.14725 * 22 21 20 41 41 H 1.07998 * 119.79254 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5452 -0.6581 1.2863 6 1 4.0841 -0.1536 0.4980 7 6 4.2343 -1.2436 2.3272 8 7 5.5479 -1.1880 2.3598 9 14 3.3021 -2.1145 3.6917 10 1 3.1227 -3.5446 3.3341 11 1 4.0703 -2.0137 4.9586 12 1 1.9722 -1.4775 3.8673 13 7 2.0195 -0.6925 -1.1995 14 6 2.3270 0.2612 -2.2672 15 6 1.0095 0.8091 -2.8302 16 6 0.2987 -0.3326 -3.5607 17 1 0.8181 -0.5442 -4.4953 18 6 -1.1444 0.0768 -3.8615 19 6 0.3002 -1.5672 -2.6948 20 6 -0.5636 -2.5992 -3.0270 21 6 -0.5974 -3.7548 -2.2724 22 6 0.2362 -3.8868 -1.1765 23 6 1.0961 -2.8643 -0.8389 24 6 1.1325 -1.6920 -1.5964 25 1 -0.3633 -1.0176 0.1438 26 1 -0.3634 0.6332 0.8094 27 1 -0.3634 0.3843 -0.9531 28 1 1.6341 -0.2390 2.1383 29 1 1.7206 -1.7632 1.2230 30 1 6.0327 -1.5996 3.0923 31 1 2.9221 1.0811 -1.8651 32 1 2.8816 -0.2425 -3.0590 33 1 1.2159 1.6211 -3.5275 34 1 0.3826 1.1728 -2.0160 35 1 -1.6647 0.2873 -2.9271 36 1 -1.1461 0.9691 -4.4874 37 1 -1.6508 -0.7346 -4.3844 38 1 -1.2155 -2.4983 -3.8823 39 1 -1.2728 -4.5545 -2.5377 40 1 0.2133 -4.7908 -0.5861 41 1 1.7461 -2.9703 0.0170 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709979021.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:53 Heat of formation + Delta-G solvation = 13.181956 kcal Electronic energy + Delta-G solvation = -20448.006772 eV Core-core repulsion = 17712.786808 eV Total energy + Delta-G solvation = -2735.219964 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.98153 -38.16073 -36.61415 -34.80055 -32.94894 -31.21874 -30.71616 -29.72185 -28.31374 -24.85233 -24.37181 -23.87261 -22.58911 -21.51274 -19.97283 -18.81386 -17.45595 -17.14820 -16.94379 -16.25608 -15.79961 -15.17764 -15.15708 -14.79957 -14.61573 -14.24533 -13.94873 -13.83149 -13.51594 -13.42474 -13.24029 -13.16948 -12.73075 -12.61093 -12.48951 -12.41951 -12.11398 -11.87437 -11.71836 -11.41645 -11.26536 -11.20312 -11.11413 -10.67578 -9.94414 -9.50960 -8.53405 -8.19673 -6.17792 0.56755 0.60902 1.34166 1.35011 1.46206 2.39430 2.87233 3.05281 3.19918 3.79068 3.83043 3.97738 3.99909 4.26675 4.28863 4.31210 4.42800 4.45695 4.53517 4.58467 4.71948 4.74706 4.79576 4.84276 4.88795 4.97395 5.05812 5.09157 5.13702 5.18894 5.24878 5.29500 5.34093 5.45133 5.51718 5.63948 5.72872 5.75773 5.78179 6.10243 6.32966 6.48047 6.77707 6.89153 7.42395 8.97797 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.024327 B = 0.007288 C = 0.006339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.709089 B = 3840.760701 C = 4416.161214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.110 3.890 3 H 0.066 0.934 4 C -0.007 4.007 5 C -0.487 4.487 6 H 0.035 0.965 7 C -0.001 4.001 8 N -0.957 5.957 9 Si 0.938 3.062 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.248 1.248 13 N -0.507 5.507 14 C 0.057 3.943 15 C -0.153 4.153 16 C -0.045 4.045 17 H 0.085 0.915 18 C -0.135 4.135 19 C -0.129 4.129 20 C -0.104 4.104 21 C -0.142 4.142 22 C -0.119 4.119 23 C -0.152 4.152 24 C 0.123 3.877 25 H 0.049 0.951 26 H 0.065 0.935 27 H 0.078 0.922 28 H 0.018 0.982 29 H 0.020 0.980 30 H 0.261 0.739 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.048 0.952 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.147 0.853 39 H 0.146 0.854 40 H 0.129 0.871 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.105 0.213 -12.802 21.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.005 3.995 3 H 0.085 0.915 4 C -0.045 4.045 5 C -0.526 4.526 6 H 0.053 0.947 7 C -0.195 4.195 8 N -0.600 5.600 9 Si 0.763 3.237 10 H -0.199 1.199 11 H -0.213 1.213 12 H -0.172 1.172 13 N -0.222 5.222 14 C -0.071 4.071 15 C -0.192 4.192 16 C -0.063 4.063 17 H 0.103 0.897 18 C -0.192 4.192 19 C -0.132 4.132 20 C -0.122 4.122 21 C -0.161 4.161 22 C -0.138 4.138 23 C -0.172 4.172 24 C 0.026 3.974 25 H 0.069 0.931 26 H 0.084 0.916 27 H 0.096 0.904 28 H 0.036 0.964 29 H 0.039 0.961 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.110 0.890 34 H 0.093 0.907 35 H 0.067 0.933 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.164 0.836 39 H 0.164 0.836 40 H 0.147 0.853 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -16.492 0.008 -12.547 20.723 hybrid contribution 0.193 -0.212 0.956 0.998 sum -16.299 -0.204 -11.591 20.002 Atomic orbital electron populations 1.22646 0.95617 1.02044 1.02885 1.21527 0.92840 0.96133 0.89020 0.91535 1.19771 0.94705 0.96206 0.93797 1.21246 0.91596 1.33207 1.06506 0.94670 1.25882 0.95461 0.97415 1.00784 1.70071 1.08164 1.47930 1.33812 0.85835 0.79733 0.79418 0.78714 1.19863 1.21253 1.17212 1.58365 1.43263 1.14059 1.06544 1.22253 0.97446 0.94426 0.92947 1.22463 0.96884 0.98535 1.01291 1.20082 0.98263 0.91006 0.96986 0.89664 1.21817 0.93578 1.02188 1.01645 1.20151 0.96634 0.97984 0.98473 1.21254 0.98283 0.92592 1.00077 1.21269 1.00307 0.98908 0.95605 1.21166 0.96141 0.98249 0.98218 1.21356 1.00872 0.93884 1.01095 1.18565 0.91083 0.92490 0.95246 0.93150 0.91633 0.90368 0.96367 0.96140 0.93050 0.91204 0.91237 0.88962 0.90729 0.93255 0.90973 0.91082 0.83559 0.83637 0.85290 0.88261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.61 7.83 71.98 0.56 -5.05 16 2 C 0.11 4.39 1.96 44.91 0.09 4.48 16 3 H 0.07 2.69 7.44 -2.39 -0.02 2.67 16 4 C -0.01 -0.35 3.49 29.85 0.10 -0.24 16 5 C -0.49 -28.65 9.34 25.60 0.24 -28.41 16 6 H 0.03 2.29 7.98 -2.91 -0.02 2.27 16 7 C 0.00 -0.03 5.47 84.65 0.46 0.43 16 8 N -0.96 -62.10 13.96 21.45 0.30 -61.80 16 9 Si 0.94 46.15 27.47 68.60 1.88 48.03 16 10 H -0.27 -13.09 7.11 99.48 0.71 -12.39 16 11 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 12 H -0.25 -11.34 6.54 99.48 0.65 -10.69 16 13 N -0.51 -19.91 4.05 -671.94 -2.72 -22.63 16 14 C 0.06 1.84 5.73 86.52 0.50 2.34 16 15 C -0.15 -3.68 5.02 30.74 0.15 -3.52 16 16 C -0.05 -0.99 2.77 -11.49 -0.03 -1.02 16 17 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 18 C -0.14 -2.21 8.74 71.98 0.63 -1.58 16 19 C -0.13 -3.60 4.81 -19.71 -0.09 -3.69 16 20 C -0.10 -2.44 9.07 22.32 0.20 -2.24 16 21 C -0.14 -3.44 10.05 22.24 0.22 -3.22 16 22 C -0.12 -3.57 10.04 22.19 0.22 -3.34 16 23 C -0.15 -5.71 8.06 22.50 0.18 -5.53 16 24 C 0.12 4.36 3.41 38.30 0.13 4.49 16 25 H 0.05 1.71 6.62 -2.38 -0.02 1.70 16 26 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.08 2.20 4.32 -2.39 -0.01 2.19 16 28 H 0.02 0.87 7.20 -2.39 -0.02 0.85 16 29 H 0.02 1.00 4.71 -2.39 -0.01 0.99 16 30 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 31 H 0.07 2.37 7.71 -2.39 -0.02 2.35 16 32 H 0.07 2.25 8.11 -2.38 -0.02 2.23 16 33 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.07 1.86 4.79 -2.39 -0.01 1.85 16 35 H 0.05 0.88 8.02 -2.39 -0.02 0.86 16 36 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.07 0.97 6.53 -2.39 -0.02 0.95 16 38 H 0.15 2.48 6.51 -2.91 -0.02 2.46 16 39 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 40 H 0.13 3.38 8.06 -2.91 -0.02 3.35 16 41 H 0.10 4.41 5.95 -2.91 -0.02 4.40 16 Total: -1.00 -69.59 304.88 3.99 -65.60 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: 0.95 Total: 16.90 kcal Atomic # 6 Polarization: -49.68 SS G_CDS: 3.57 Total: -46.11 kcal Atomic # 7 Polarization: -82.01 SS G_CDS: -2.42 Total: -84.43 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 1.88 Total: 48.03 kcal Total: -69.59 3.99 -65.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709979021.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.781 kcal (2) G-P(sol) polarization free energy of solvation -69.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds