Wall clock time and date at job start Mon Mar 30 2020 06:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 109.47194 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00158 * 2 1 3 5 5 C 1.50703 * 109.47148 * 175.00085 * 4 2 1 6 6 H 1.07997 * 119.99578 * 0.02562 * 5 4 2 7 7 C 1.37871 * 119.99597 * 180.02562 * 5 4 2 8 8 N 1.31520 * 119.99673 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 120.00403 * 359.97438 * 7 5 4 10 10 H 1.48495 * 109.47170 * 89.99993 * 9 7 5 11 11 H 1.48503 * 109.46852 * 210.00137 * 9 7 5 12 12 H 1.48498 * 109.47273 * 330.00019 * 9 7 5 13 13 N 1.46500 * 109.47007 * 120.00377 * 2 1 3 14 14 C 1.39668 * 120.00053 * 274.99711 * 13 2 1 15 15 C 1.38931 * 120.07788 * 0.02562 * 14 13 2 16 16 C 1.38080 * 119.93013 * 179.97438 * 15 14 13 17 17 C 1.38307 * 120.07055 * 359.97438 * 16 15 14 18 18 C 1.38264 * 120.15512 * 0.02562 * 17 16 15 19 19 C 1.50697 * 119.96653 * 179.97438 * 18 17 16 20 20 C 1.53785 * 113.61396 * 39.13517 * 19 18 17 21 21 C 1.53951 * 87.01913 * 220.04795 * 20 19 18 22 22 C 1.53779 * 87.11398 * 25.36303 * 21 20 19 23 23 C 1.38128 * 120.07181 * 359.74187 * 18 17 16 24 24 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47153 * 299.99712 * 1 2 3 26 26 H 1.09001 * 109.47289 * 59.99796 * 1 2 3 27 27 H 1.09000 * 109.47314 * 295.00428 * 4 2 1 28 28 H 1.09007 * 109.46744 * 55.00049 * 4 2 1 29 29 H 0.96992 * 120.00253 * 179.97438 * 8 7 5 30 30 H 0.97002 * 120.00030 * 94.99975 * 13 2 1 31 31 H 1.08004 * 120.03077 * 359.97438 * 15 14 13 32 32 H 1.07995 * 119.96597 * 179.97438 * 16 15 14 33 33 H 1.08000 * 119.92101 * 180.02562 * 17 16 15 34 34 H 1.08999 * 112.84842 * 170.33027 * 19 18 17 35 35 H 1.09009 * 113.61333 * 334.56914 * 20 19 18 36 36 H 1.09003 * 113.61274 * 105.46698 * 20 19 18 37 37 H 1.09004 * 113.53644 * 270.80772 * 21 20 19 38 38 H 1.09001 * 113.74325 * 139.94171 * 21 20 19 39 39 H 1.08999 * 113.61538 * 220.09152 * 22 21 20 40 40 H 1.08996 * 113.61844 * 89.18177 * 22 21 20 41 41 H 1.08003 * 120.03915 * 180.27851 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6149 -1.3128 6 1 4.0789 -0.0862 -0.5392 7 6 4.2303 -1.1926 -2.3584 8 7 5.5410 -1.1003 -2.4135 9 14 3.3014 -2.1077 -3.6960 10 1 2.9397 -1.1625 -4.7827 11 1 4.1602 -3.1877 -4.2447 12 1 2.0658 -2.7003 -3.1238 13 7 2.0183 -0.6907 1.1961 14 6 2.1517 0.0060 2.3993 15 6 1.8213 1.3539 2.4637 16 6 1.9539 2.0396 3.6549 17 6 2.4146 1.3858 4.7833 18 6 2.7443 0.0444 4.7228 19 6 3.2463 -0.6636 5.9547 20 6 2.5254 -0.2402 7.2454 21 6 3.9008 -0.2917 7.9352 22 6 4.5183 -0.0370 6.5501 23 6 2.6095 -0.6486 3.5356 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.7516 -1.7715 -1.2058 28 1 1.6053 -0.2616 -2.1370 29 1 6.0254 -1.5070 -3.1489 30 1 2.2490 -1.6319 1.1525 31 1 1.4612 1.8648 1.5830 32 1 1.6977 3.0875 3.7055 33 1 2.5170 1.9243 5.7138 34 1 3.3113 -1.7439 5.8251 35 1 2.0978 0.7614 7.1982 36 1 1.8214 -0.9850 7.6167 37 1 4.1441 -1.2706 8.3485 38 1 4.0673 0.5200 8.6434 39 1 5.4209 -0.6180 6.3609 40 1 4.6365 1.0201 6.3124 41 1 2.8629 -1.6975 3.4901 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709994176.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:08 Heat of formation + Delta-G solvation = 28.661021 kcal Electronic energy + Delta-G solvation = -18869.269931 eV Core-core repulsion = 16134.721189 eV Total energy + Delta-G solvation = -2734.548741 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.80191 -38.13635 -35.95545 -32.81667 -31.43839 -30.77600 -28.00010 -27.67250 -25.59872 -25.30752 -23.01844 -22.02569 -21.35746 -19.62014 -18.87405 -17.01229 -16.74528 -15.81639 -15.36637 -15.09553 -14.72846 -14.15721 -13.82930 -13.35514 -13.11042 -12.83709 -12.66393 -12.47827 -12.39471 -12.25908 -11.87085 -11.71017 -11.68137 -11.21023 -11.05063 -10.83960 -10.61633 -10.44861 -10.35575 -10.04979 -9.88153 -9.77400 -9.41653 -9.17693 -8.59473 -8.29720 -6.76811 -6.07808 -4.06628 1.83441 2.10760 3.25767 3.34186 3.35663 4.10441 4.24995 4.39902 4.63814 4.71684 4.72972 5.07223 5.24863 5.25900 5.32360 5.55770 5.64351 5.65001 5.65549 5.75761 5.79493 5.85442 5.86708 5.93272 5.96005 6.00591 6.11848 6.27894 6.35162 6.38136 6.44471 6.52420 6.63957 6.82185 6.95126 7.01617 7.10668 7.16059 7.39321 7.70258 8.05590 8.43625 8.49788 8.99674 9.53461 11.05421 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.026695 B = 0.004380 C = 0.004028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.630571 B = 6390.802519 C = 6950.361317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.157 3.843 3 H 0.072 0.928 4 C -0.021 4.021 5 C -0.517 4.517 6 H 0.075 0.925 7 C 0.067 3.933 8 N -0.900 5.900 9 Si 0.878 3.122 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.267 1.267 13 N -0.718 5.718 14 C 0.239 3.761 15 C -0.209 4.209 16 C -0.071 4.071 17 C -0.195 4.195 18 C -0.025 4.025 19 C -0.072 4.072 20 C -0.133 4.133 21 C -0.144 4.144 22 C -0.130 4.130 23 C -0.203 4.203 24 H 0.051 0.949 25 H 0.049 0.951 26 H 0.058 0.942 27 H 0.019 0.981 28 H 0.025 0.975 29 H 0.263 0.737 30 H 0.399 0.601 31 H 0.119 0.881 32 H 0.112 0.888 33 H 0.109 0.891 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.084 0.916 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.699 2.220 15.996 17.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.052 3.948 3 H 0.090 0.910 4 C -0.059 4.059 5 C -0.555 4.555 6 H 0.093 0.907 7 C -0.134 4.134 8 N -0.539 5.539 9 Si 0.705 3.295 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.191 1.191 13 N -0.342 5.342 14 C 0.132 3.868 15 C -0.232 4.232 16 C -0.090 4.090 17 C -0.215 4.215 18 C -0.026 4.026 19 C -0.090 4.090 20 C -0.170 4.170 21 C -0.182 4.182 22 C -0.168 4.168 23 C -0.226 4.226 24 H 0.070 0.930 25 H 0.068 0.932 26 H 0.077 0.923 27 H 0.038 0.962 28 H 0.043 0.957 29 H 0.073 0.927 30 H 0.234 0.766 31 H 0.137 0.863 32 H 0.130 0.870 33 H 0.127 0.873 34 H 0.110 0.890 35 H 0.103 0.897 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.102 0.898 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -7.613 2.262 15.675 17.573 hybrid contribution -0.168 -0.885 -0.995 1.342 sum -7.781 1.377 14.680 16.672 Atomic orbital electron populations 1.22330 0.97693 1.01514 1.01028 1.20931 0.91028 0.97264 0.85623 0.90973 1.19875 0.97867 0.95743 0.92395 1.21076 0.89447 1.35293 1.09715 0.90701 1.25030 0.94708 0.95868 0.97802 1.69916 1.06548 1.45244 1.32203 0.86824 0.80156 0.80007 0.82513 1.20295 1.21415 1.19141 1.44877 1.70484 1.12371 1.06469 1.17906 0.91278 0.91408 0.86228 1.20654 1.10377 0.93404 0.98717 1.20755 0.97139 0.98638 0.92430 1.20492 1.08237 0.94475 0.98294 1.19292 0.96376 0.93556 0.93391 1.21494 0.96487 0.99339 0.91700 1.23047 0.96286 1.02050 0.95610 1.22875 0.96961 1.01668 0.96683 1.22963 0.96874 1.01542 0.95397 1.20410 1.10115 0.99919 0.92170 0.93014 0.93234 0.92335 0.96241 0.95679 0.92737 0.76607 0.86343 0.86995 0.87302 0.88979 0.89653 0.91701 0.90433 0.91647 0.91497 0.89761 0.86842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.65 9.43 37.16 0.35 -2.30 16 2 C 0.16 3.00 2.21 -67.93 -0.15 2.85 16 3 H 0.07 1.45 6.48 -51.93 -0.34 1.11 16 4 C -0.02 -0.48 3.58 -27.88 -0.10 -0.58 16 5 C -0.52 -14.27 9.39 -34.44 -0.32 -14.60 16 6 H 0.07 2.29 7.99 -52.49 -0.42 1.87 16 7 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 8 N -0.90 -27.54 13.96 55.43 0.77 -26.76 16 9 Si 0.88 21.24 27.47 -169.99 -4.67 16.57 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.27 -6.16 6.54 56.52 0.37 -5.79 16 13 N -0.72 -13.36 4.96 -52.17 -0.26 -13.62 16 14 C 0.24 4.23 6.64 -83.79 -0.56 3.68 16 15 C -0.21 -3.49 8.85 -39.38 -0.35 -3.84 16 16 C -0.07 -1.04 10.04 -39.61 -0.40 -1.44 16 17 C -0.19 -2.74 8.53 -39.55 -0.34 -3.07 16 18 C -0.03 -0.37 5.29 -104.65 -0.55 -0.92 16 19 C -0.07 -0.85 3.97 -90.96 -0.36 -1.21 16 20 C -0.13 -1.32 7.47 -25.83 -0.19 -1.51 16 21 C -0.14 -1.30 8.09 -25.83 -0.21 -1.51 16 22 C -0.13 -1.41 7.54 -25.92 -0.20 -1.61 16 23 C -0.20 -3.32 9.56 -39.38 -0.38 -3.70 16 24 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.05 0.74 7.71 -51.93 -0.40 0.34 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 28 H 0.03 0.56 7.57 -51.93 -0.39 0.17 16 29 H 0.26 7.54 8.31 -40.82 -0.34 7.21 16 30 H 0.40 7.42 8.62 -40.82 -0.35 7.07 16 31 H 0.12 1.94 6.12 -52.48 -0.32 1.62 16 32 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 33 H 0.11 1.31 6.72 -52.49 -0.35 0.95 16 34 H 0.09 1.06 8.08 -51.93 -0.42 0.64 16 35 H 0.08 0.85 6.39 -51.92 -0.33 0.51 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.08 0.94 7.64 -51.93 -0.40 0.55 16 41 H 0.11 1.75 8.05 -52.48 -0.42 1.33 16 LS Contribution 326.98 15.07 4.93 4.93 Total: -1.00 -29.71 326.98 -9.72 -39.43 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -6.65 Total: 7.40 kcal Atomic # 6 Polarization: -24.09 SS G_CDS: -3.85 Total: -27.94 kcal Atomic # 7 Polarization: -40.90 SS G_CDS: 0.51 Total: -40.39 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.67 Total: 16.57 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.71 -9.72 -39.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709994176.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.088 kcal (2) G-P(sol) polarization free energy of solvation -29.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds