Wall clock time and date at job start Mon Mar 30 2020 06:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 109.47194 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00158 * 2 1 3 5 5 C 1.50703 * 109.47148 * 175.00085 * 4 2 1 6 6 H 1.07997 * 119.99578 * 0.02562 * 5 4 2 7 7 C 1.37871 * 119.99597 * 180.02562 * 5 4 2 8 8 N 1.31520 * 119.99673 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 120.00403 * 359.97438 * 7 5 4 10 10 H 1.48495 * 109.47170 * 89.99993 * 9 7 5 11 11 H 1.48503 * 109.46852 * 210.00137 * 9 7 5 12 12 H 1.48498 * 109.47273 * 330.00019 * 9 7 5 13 13 N 1.46500 * 109.47007 * 120.00377 * 2 1 3 14 14 C 1.39668 * 120.00053 * 274.99711 * 13 2 1 15 15 C 1.38931 * 120.07788 * 0.02562 * 14 13 2 16 16 C 1.38080 * 119.93013 * 179.97438 * 15 14 13 17 17 C 1.38307 * 120.07055 * 359.97438 * 16 15 14 18 18 C 1.38264 * 120.15512 * 0.02562 * 17 16 15 19 19 C 1.50697 * 119.96653 * 179.97438 * 18 17 16 20 20 C 1.53785 * 113.61396 * 39.13517 * 19 18 17 21 21 C 1.53951 * 87.01913 * 220.04795 * 20 19 18 22 22 C 1.53779 * 87.11398 * 25.36303 * 21 20 19 23 23 C 1.38128 * 120.07181 * 359.74187 * 18 17 16 24 24 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47153 * 299.99712 * 1 2 3 26 26 H 1.09001 * 109.47289 * 59.99796 * 1 2 3 27 27 H 1.09000 * 109.47314 * 295.00428 * 4 2 1 28 28 H 1.09007 * 109.46744 * 55.00049 * 4 2 1 29 29 H 0.96992 * 120.00253 * 179.97438 * 8 7 5 30 30 H 0.97002 * 120.00030 * 94.99975 * 13 2 1 31 31 H 1.08004 * 120.03077 * 359.97438 * 15 14 13 32 32 H 1.07995 * 119.96597 * 179.97438 * 16 15 14 33 33 H 1.08000 * 119.92101 * 180.02562 * 17 16 15 34 34 H 1.08999 * 112.84842 * 170.33027 * 19 18 17 35 35 H 1.09009 * 113.61333 * 334.56914 * 20 19 18 36 36 H 1.09003 * 113.61274 * 105.46698 * 20 19 18 37 37 H 1.09004 * 113.53644 * 270.80772 * 21 20 19 38 38 H 1.09001 * 113.74325 * 139.94171 * 21 20 19 39 39 H 1.08999 * 113.61538 * 220.09152 * 22 21 20 40 40 H 1.08996 * 113.61844 * 89.18177 * 22 21 20 41 41 H 1.08003 * 120.03915 * 180.27851 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6149 -1.3128 6 1 4.0789 -0.0862 -0.5392 7 6 4.2303 -1.1926 -2.3584 8 7 5.5410 -1.1003 -2.4135 9 14 3.3014 -2.1077 -3.6960 10 1 2.9397 -1.1625 -4.7827 11 1 4.1602 -3.1877 -4.2447 12 1 2.0658 -2.7003 -3.1238 13 7 2.0183 -0.6907 1.1961 14 6 2.1517 0.0060 2.3993 15 6 1.8213 1.3539 2.4637 16 6 1.9539 2.0396 3.6549 17 6 2.4146 1.3858 4.7833 18 6 2.7443 0.0444 4.7228 19 6 3.2463 -0.6636 5.9547 20 6 2.5254 -0.2402 7.2454 21 6 3.9008 -0.2917 7.9352 22 6 4.5183 -0.0370 6.5501 23 6 2.6095 -0.6486 3.5356 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.7516 -1.7715 -1.2058 28 1 1.6053 -0.2616 -2.1370 29 1 6.0254 -1.5070 -3.1489 30 1 2.2490 -1.6319 1.1525 31 1 1.4612 1.8648 1.5830 32 1 1.6977 3.0875 3.7055 33 1 2.5170 1.9243 5.7138 34 1 3.3113 -1.7439 5.8251 35 1 2.0978 0.7614 7.1982 36 1 1.8214 -0.9850 7.6167 37 1 4.1441 -1.2706 8.3485 38 1 4.0673 0.5200 8.6434 39 1 5.4209 -0.6180 6.3609 40 1 4.6365 1.0201 6.3124 41 1 2.8629 -1.6975 3.4901 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709994176.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:08 Heat of formation + Delta-G solvation = 13.277388 kcal Electronic energy + Delta-G solvation = -18869.937015 eV Core-core repulsion = 16134.721189 eV Total energy + Delta-G solvation = -2735.215826 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.88945 -39.26651 -37.33373 -34.79859 -32.99190 -31.94897 -29.79602 -28.96100 -26.41452 -26.28672 -24.82405 -23.23675 -22.68473 -20.98737 -19.89595 -18.91377 -18.19799 -17.07534 -16.53947 -16.31557 -16.26396 -15.57292 -15.07473 -14.81105 -14.48897 -14.31986 -14.00545 -13.84567 -13.56415 -13.32755 -13.29920 -13.23587 -12.81422 -12.53187 -12.47888 -12.16290 -12.05385 -11.76664 -11.52739 -11.35554 -11.30866 -11.23870 -11.00645 -10.78022 -10.66549 -9.49011 -8.28119 -8.11339 -6.32018 0.61908 0.87399 1.35572 1.37170 1.48309 2.35339 2.70849 3.05081 3.08779 3.79408 3.81579 3.92756 4.10480 4.16890 4.19040 4.27083 4.40843 4.44382 4.55545 4.64410 4.73737 4.81351 4.87804 4.92578 4.94700 5.02567 5.05083 5.10926 5.13528 5.15120 5.23638 5.29846 5.35808 5.43300 5.58811 5.61365 5.65013 5.76460 5.94030 6.16914 6.28975 6.67300 6.76350 7.00875 7.31941 8.88963 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.026695 B = 0.004380 C = 0.004028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.630571 B = 6390.802519 C = 6950.361317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.162 3.838 3 H 0.055 0.945 4 C -0.017 4.017 5 C -0.517 4.517 6 H 0.027 0.973 7 C 0.003 3.997 8 N -0.954 5.954 9 Si 0.952 3.048 10 H -0.267 1.267 11 H -0.289 1.289 12 H -0.244 1.244 13 N -0.728 5.728 14 C 0.215 3.785 15 C -0.227 4.227 16 C -0.072 4.072 17 C -0.191 4.191 18 C -0.026 4.026 19 C -0.082 4.082 20 C -0.127 4.127 21 C -0.132 4.132 22 C -0.134 4.134 23 C -0.221 4.221 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.073 0.927 27 H 0.026 0.974 28 H 0.036 0.964 29 H 0.264 0.736 30 H 0.395 0.605 31 H 0.116 0.884 32 H 0.139 0.861 33 H 0.135 0.865 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.072 0.928 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.063 0.937 40 H 0.080 0.920 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.618 2.258 17.102 19.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.057 3.943 3 H 0.073 0.927 4 C -0.055 4.055 5 C -0.555 4.555 6 H 0.045 0.955 7 C -0.194 4.194 8 N -0.595 5.595 9 Si 0.775 3.225 10 H -0.192 1.192 11 H -0.215 1.215 12 H -0.167 1.167 13 N -0.354 5.354 14 C 0.110 3.890 15 C -0.250 4.250 16 C -0.090 4.090 17 C -0.211 4.211 18 C -0.027 4.027 19 C -0.100 4.100 20 C -0.164 4.164 21 C -0.169 4.169 22 C -0.172 4.172 23 C -0.244 4.244 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.092 0.908 27 H 0.044 0.956 28 H 0.054 0.946 29 H 0.073 0.927 30 H 0.229 0.771 31 H 0.134 0.866 32 H 0.157 0.843 33 H 0.153 0.847 34 H 0.109 0.891 35 H 0.107 0.893 36 H 0.091 0.909 37 H 0.105 0.895 38 H 0.098 0.902 39 H 0.082 0.918 40 H 0.099 0.901 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -9.556 2.320 16.815 19.479 hybrid contribution 0.524 -0.822 -1.211 1.555 sum -9.032 1.498 15.604 18.091 Atomic orbital electron populations 1.22194 0.94622 1.02273 1.02222 1.20775 0.93286 0.95778 0.84509 0.92660 1.19825 0.94351 0.96662 0.94674 1.21313 0.92126 1.33967 1.08140 0.95487 1.26020 0.95520 0.97078 1.00755 1.70090 1.08718 1.47137 1.33524 0.85643 0.79265 0.78539 0.79033 1.19205 1.21516 1.16733 1.44830 1.71620 1.12162 1.06780 1.18161 0.92532 0.92087 0.86258 1.20804 1.11316 0.93240 0.99636 1.21105 0.96253 0.99909 0.91781 1.20837 1.06835 0.94340 0.99118 1.19659 0.95289 0.94032 0.93688 1.21634 0.97780 0.99214 0.91413 1.23037 0.96899 1.02368 0.94108 1.22834 0.95567 1.02750 0.95780 1.22991 0.96288 1.01126 0.96776 1.20600 1.10821 1.00248 0.92756 0.92411 0.92318 0.90839 0.95557 0.94595 0.92699 0.77136 0.86638 0.84329 0.84693 0.89080 0.89309 0.90893 0.89479 0.90242 0.91819 0.90119 0.86940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.65 9.43 71.98 0.68 -3.97 16 2 C 0.16 6.21 2.21 44.99 0.10 6.31 16 3 H 0.06 2.28 6.48 -2.39 -0.02 2.26 16 4 C -0.02 -0.78 3.58 29.85 0.11 -0.67 16 5 C -0.52 -29.39 9.39 25.60 0.24 -29.15 16 6 H 0.03 1.74 7.99 -2.91 -0.02 1.72 16 7 C 0.00 0.15 5.47 84.65 0.46 0.61 16 8 N -0.95 -60.30 13.96 21.45 0.30 -60.00 16 9 Si 0.95 43.69 27.47 68.60 1.88 45.57 16 10 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 11 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 12 H -0.24 -10.22 6.54 99.48 0.65 -9.57 16 13 N -0.73 -27.89 4.96 -318.95 -1.58 -29.47 16 14 C 0.22 7.81 6.64 38.22 0.25 8.06 16 15 C -0.23 -7.63 8.85 22.40 0.20 -7.43 16 16 C -0.07 -2.03 10.04 22.25 0.22 -1.80 16 17 C -0.19 -5.05 8.53 22.29 0.19 -4.86 16 18 C -0.03 -0.74 5.29 -19.89 -0.11 -0.84 16 19 C -0.08 -1.84 3.97 -11.01 -0.04 -1.89 16 20 C -0.13 -2.20 7.47 31.18 0.23 -1.97 16 21 C -0.13 -2.02 8.09 31.18 0.25 -1.77 16 22 C -0.13 -2.70 7.54 31.12 0.23 -2.46 16 23 C -0.22 -7.38 9.56 22.40 0.21 -7.17 16 24 H 0.06 1.66 8.14 -2.38 -0.02 1.65 16 25 H 0.06 1.66 7.71 -2.39 -0.02 1.64 16 26 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.03 1.15 7.20 -2.39 -0.02 1.13 16 28 H 0.04 1.54 7.57 -2.38 -0.02 1.52 16 29 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 30 H 0.39 15.24 8.62 -92.71 -0.80 14.44 16 31 H 0.12 3.84 6.12 -2.91 -0.02 3.83 16 32 H 0.14 3.08 8.06 -2.91 -0.02 3.06 16 33 H 0.14 2.83 6.72 -2.91 -0.02 2.81 16 34 H 0.09 2.04 8.08 -2.39 -0.02 2.02 16 35 H 0.09 1.49 6.39 -2.38 -0.02 1.47 16 36 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.08 1.67 7.64 -2.39 -0.02 1.65 16 41 H 0.11 3.63 8.05 -2.91 -0.02 3.60 16 Total: -1.00 -65.83 326.98 3.99 -61.84 By element: Atomic # 1 Polarization: 30.91 SS G_CDS: 0.15 Total: 31.06 kcal Atomic # 6 Polarization: -52.23 SS G_CDS: 3.24 Total: -48.99 kcal Atomic # 7 Polarization: -88.19 SS G_CDS: -1.28 Total: -89.47 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 1.88 Total: 45.57 kcal Total: -65.83 3.99 -61.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709994176.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.115 kcal (2) G-P(sol) polarization free energy of solvation -65.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds