Wall clock time and date at job start Mon Mar 30 2020 06:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47036 * 2 1 4 4 C 1.52998 * 109.47254 * 120.00490 * 2 1 3 5 5 C 1.50702 * 109.46815 * 184.99980 * 4 2 1 6 6 H 1.07996 * 120.00415 * 359.97438 * 5 4 2 7 7 C 1.37880 * 119.99726 * 180.02562 * 5 4 2 8 8 N 1.31518 * 120.00134 * 179.97438 * 7 5 4 9 9 Si 1.86795 * 120.00031 * 359.97438 * 7 5 4 10 10 H 1.48506 * 109.47207 * 90.00010 * 9 7 5 11 11 H 1.48497 * 109.47525 * 209.99999 * 9 7 5 12 12 H 1.48505 * 109.47412 * 330.00377 * 9 7 5 13 13 N 1.46500 * 109.46970 * 240.00620 * 2 1 3 14 14 C 1.39676 * 120.00649 * 84.99671 * 13 2 1 15 15 C 1.38934 * 120.06965 * 359.97438 * 14 13 2 16 16 C 1.38082 * 119.92382 * 179.97438 * 15 14 13 17 17 C 1.38308 * 120.07659 * 0.02562 * 16 15 14 18 18 C 1.38262 * 120.14770 * 359.97163 * 17 16 15 19 19 C 1.50701 * 119.96308 * 180.02562 * 18 17 16 20 20 C 1.53785 * 113.69000 * 320.93839 * 19 18 17 21 21 C 1.53779 * 87.08093 * 139.98979 * 20 19 18 22 22 C 1.53781 * 113.61206 * 58.47375 * 19 18 17 23 23 C 1.38123 * 120.07472 * 0.29724 * 18 17 16 24 24 H 1.08997 * 109.47036 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.46726 * 299.99706 * 1 2 3 26 26 H 1.09002 * 109.47034 * 59.99346 * 1 2 3 27 27 H 1.09000 * 109.46995 * 304.99277 * 4 2 1 28 28 H 1.08995 * 109.47150 * 64.99986 * 4 2 1 29 29 H 0.96996 * 120.00215 * 179.97438 * 8 7 5 30 30 H 0.97001 * 119.99632 * 265.00024 * 13 2 1 31 31 H 1.07998 * 120.04096 * 359.97438 * 15 14 13 32 32 H 1.07998 * 119.96162 * 179.97438 * 16 15 14 33 33 H 1.07997 * 119.92731 * 179.97438 * 17 16 15 34 34 H 1.09002 * 112.85178 * 189.66681 * 19 18 17 35 35 H 1.09003 * 113.60734 * 254.54099 * 20 19 18 36 36 H 1.08996 * 113.61146 * 25.43597 * 20 19 18 37 37 H 1.08994 * 113.61314 * 220.01752 * 21 20 19 38 38 H 1.09005 * 113.69135 * 89.12376 * 21 20 19 39 39 H 1.09005 * 113.61302 * 334.48043 * 22 19 18 40 40 H 1.08993 * 113.62030 * 105.38889 * 22 19 18 41 41 H 1.08000 * 120.04051 * 179.72709 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5420 -0.6149 1.3125 6 1 4.0790 -0.0862 0.5391 7 6 4.2305 -1.1937 2.3575 8 7 5.5413 -1.1013 2.4127 9 14 3.3017 -2.1089 3.6950 10 1 3.1701 -3.5388 3.3165 11 1 4.0455 -2.0025 4.9759 12 1 1.9510 -1.5132 3.8561 13 7 2.0183 -0.6905 -1.1963 14 6 2.1517 0.0063 -2.3994 15 6 1.8212 1.3542 -2.4636 16 6 1.9547 2.0402 -3.6545 17 6 2.4163 1.3869 -4.7828 18 6 2.7462 0.0456 -4.7224 19 6 3.2493 -0.6620 -5.9541 20 6 2.5317 -0.2383 -7.2466 21 6 3.9063 -0.2913 -7.9340 22 6 4.5217 -0.0350 -6.5481 23 6 2.6098 -0.6480 -3.5357 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 1.6055 -0.2618 2.1369 28 1 1.7517 -1.7716 1.2054 29 1 6.0257 -1.5081 3.1480 30 1 2.2490 -1.6317 -1.1527 31 1 1.4602 1.8649 -1.5831 32 1 1.6975 3.0879 -3.7052 33 1 2.5194 1.9257 -5.7130 34 1 3.3144 -1.7423 -5.8248 35 1 1.8280 -0.9826 -7.6193 36 1 2.1048 0.7636 -7.2006 37 1 4.0719 0.5204 -8.6422 38 1 4.1522 -1.2699 -8.3466 39 1 4.6388 1.0226 -6.3113 40 1 5.4245 -0.6150 -6.3572 41 1 2.8634 -1.6968 -3.4902 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709994177.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:11 Heat of formation + Delta-G solvation = 28.739263 kcal Electronic energy + Delta-G solvation = -18869.073282 eV Core-core repulsion = 16134.527934 eV Total energy + Delta-G solvation = -2734.545349 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.80630 -38.14255 -35.95808 -32.81665 -31.43826 -30.77835 -28.00053 -27.67287 -25.59768 -25.30876 -23.01859 -22.02549 -21.35827 -19.61949 -18.87479 -17.01251 -16.74642 -15.81610 -15.36762 -15.08939 -14.73518 -14.16403 -13.82693 -13.35405 -13.11212 -12.83575 -12.66730 -12.47627 -12.38607 -12.26350 -11.81580 -11.79698 -11.67435 -11.22238 -11.04920 -10.87388 -10.54873 -10.42008 -10.34234 -10.03464 -9.90554 -9.81020 -9.41299 -9.18330 -8.59399 -8.29730 -6.76822 -6.07812 -4.06620 1.83412 2.10738 3.25562 3.34218 3.35870 4.10333 4.24968 4.39913 4.63999 4.72009 4.72719 5.07124 5.24820 5.25856 5.32321 5.55758 5.64323 5.64960 5.65683 5.75741 5.79476 5.85449 5.86745 5.93348 5.96025 6.00553 6.11879 6.27817 6.35156 6.38121 6.44465 6.52315 6.63495 6.82359 6.94984 7.04069 7.10495 7.14466 7.39240 7.70316 8.05521 8.43563 8.49762 8.99697 9.53435 11.05394 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.026678 B = 0.004381 C = 0.004028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.290185 B = 6389.440863 C = 6949.938295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.157 3.843 3 H 0.072 0.928 4 C -0.021 4.021 5 C -0.517 4.517 6 H 0.075 0.925 7 C 0.067 3.933 8 N -0.900 5.900 9 Si 0.878 3.122 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.266 1.266 13 N -0.718 5.718 14 C 0.239 3.761 15 C -0.209 4.209 16 C -0.071 4.071 17 C -0.195 4.195 18 C -0.025 4.025 19 C -0.072 4.072 20 C -0.132 4.132 21 C -0.145 4.145 22 C -0.130 4.130 23 C -0.203 4.203 24 H 0.051 0.949 25 H 0.058 0.942 26 H 0.048 0.952 27 H 0.029 0.971 28 H 0.015 0.985 29 H 0.263 0.737 30 H 0.399 0.601 31 H 0.119 0.881 32 H 0.112 0.888 33 H 0.109 0.891 34 H 0.092 0.908 35 H 0.064 0.936 36 H 0.085 0.915 37 H 0.065 0.935 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.066 0.934 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.698 2.266 -15.967 17.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.052 3.948 3 H 0.090 0.910 4 C -0.059 4.059 5 C -0.555 4.555 6 H 0.093 0.907 7 C -0.134 4.134 8 N -0.539 5.539 9 Si 0.705 3.295 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.191 1.191 13 N -0.342 5.342 14 C 0.132 3.868 15 C -0.231 4.231 16 C -0.090 4.090 17 C -0.215 4.215 18 C -0.026 4.026 19 C -0.090 4.090 20 C -0.170 4.170 21 C -0.182 4.182 22 C -0.168 4.168 23 C -0.226 4.226 24 H 0.070 0.930 25 H 0.077 0.923 26 H 0.068 0.932 27 H 0.048 0.952 28 H 0.033 0.967 29 H 0.073 0.927 30 H 0.234 0.766 31 H 0.137 0.863 32 H 0.130 0.870 33 H 0.127 0.873 34 H 0.110 0.890 35 H 0.083 0.917 36 H 0.104 0.896 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.085 0.915 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -7.613 2.314 -15.643 17.551 hybrid contribution -0.163 -0.923 0.970 1.349 sum -7.777 1.390 -14.674 16.665 Atomic orbital electron populations 1.22331 0.97692 1.01509 1.01030 1.20939 0.91031 0.97292 0.85579 0.90950 1.19875 0.97911 0.95449 0.92627 1.21079 0.89433 1.35310 1.09715 0.90700 1.25033 0.94699 0.95905 0.97773 1.69917 1.06536 1.45219 1.32234 0.86821 0.80415 0.80484 0.81767 1.20399 1.21382 1.19083 1.44887 1.70494 1.12372 1.06474 1.17906 0.91281 0.91408 0.86231 1.20654 1.10367 0.93400 0.98724 1.20756 0.97137 0.98639 0.92432 1.20491 1.08226 0.94478 0.98297 1.19289 0.96373 0.93554 0.93392 1.21496 0.96495 0.99339 0.91697 1.23014 0.96306 1.02053 0.95603 1.22847 0.96986 1.01675 0.96692 1.22969 0.96881 1.01539 0.95391 1.20405 1.10104 0.99916 0.92184 0.93019 0.92326 0.93240 0.95236 0.96690 0.92737 0.76616 0.86341 0.86995 0.87301 0.88976 0.91715 0.89649 0.91659 0.90412 0.89761 0.91502 0.86846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.65 9.43 37.16 0.35 -2.30 16 2 C 0.16 3.00 2.21 -67.93 -0.15 2.85 16 3 H 0.07 1.45 6.49 -51.93 -0.34 1.11 16 4 C -0.02 -0.48 3.58 -27.88 -0.10 -0.57 16 5 C -0.52 -14.27 9.39 -34.44 -0.32 -14.59 16 6 H 0.07 2.29 7.99 -52.49 -0.42 1.87 16 7 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 8 N -0.90 -27.53 13.96 55.43 0.77 -26.76 16 9 Si 0.88 21.24 27.47 -169.99 -4.67 16.57 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 12 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 13 N -0.72 -13.36 4.96 -52.17 -0.26 -13.62 16 14 C 0.24 4.23 6.64 -83.79 -0.56 3.68 16 15 C -0.21 -3.49 8.85 -39.38 -0.35 -3.83 16 16 C -0.07 -1.04 10.04 -39.61 -0.40 -1.44 16 17 C -0.19 -2.74 8.54 -39.55 -0.34 -3.07 16 18 C -0.03 -0.37 5.29 -104.65 -0.55 -0.92 16 19 C -0.07 -0.85 3.98 -90.96 -0.36 -1.22 16 20 C -0.13 -1.32 7.46 -25.92 -0.19 -1.51 16 21 C -0.14 -1.30 8.08 -25.92 -0.21 -1.51 16 22 C -0.13 -1.41 7.54 -25.92 -0.20 -1.61 16 23 C -0.20 -3.32 9.56 -39.38 -0.38 -3.70 16 24 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 25 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.05 0.74 7.71 -51.93 -0.40 0.34 16 27 H 0.03 0.67 7.20 -51.93 -0.37 0.30 16 28 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 29 H 0.26 7.54 8.31 -40.82 -0.34 7.21 16 30 H 0.40 7.41 8.62 -40.82 -0.35 7.05 16 31 H 0.12 1.94 6.12 -52.49 -0.32 1.62 16 32 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 33 H 0.11 1.31 6.71 -52.49 -0.35 0.95 16 34 H 0.09 1.06 8.08 -51.93 -0.42 0.64 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.09 0.85 6.39 -51.93 -0.33 0.51 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.94 7.64 -51.93 -0.40 0.55 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.11 1.75 8.05 -52.49 -0.42 1.33 16 LS Contribution 326.97 15.07 4.93 4.93 Total: -1.00 -29.69 326.97 -9.72 -39.41 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -6.64 Total: 7.40 kcal Atomic # 6 Polarization: -24.09 SS G_CDS: -3.85 Total: -27.94 kcal Atomic # 7 Polarization: -40.89 SS G_CDS: 0.51 Total: -40.38 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.67 Total: 16.57 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.69 -9.72 -39.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709994177.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.154 kcal (2) G-P(sol) polarization free energy of solvation -29.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds