Wall clock time and date at job start Mon Mar 30 2020 06:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47036 * 2 1 4 4 C 1.52998 * 109.47254 * 120.00490 * 2 1 3 5 5 C 1.50702 * 109.46815 * 184.99980 * 4 2 1 6 6 H 1.07996 * 120.00415 * 359.97438 * 5 4 2 7 7 C 1.37880 * 119.99726 * 180.02562 * 5 4 2 8 8 N 1.31518 * 120.00134 * 179.97438 * 7 5 4 9 9 Si 1.86795 * 120.00031 * 359.97438 * 7 5 4 10 10 H 1.48506 * 109.47207 * 90.00010 * 9 7 5 11 11 H 1.48497 * 109.47525 * 209.99999 * 9 7 5 12 12 H 1.48505 * 109.47412 * 330.00377 * 9 7 5 13 13 N 1.46500 * 109.46970 * 240.00620 * 2 1 3 14 14 C 1.39676 * 120.00649 * 84.99671 * 13 2 1 15 15 C 1.38934 * 120.06965 * 359.97438 * 14 13 2 16 16 C 1.38082 * 119.92382 * 179.97438 * 15 14 13 17 17 C 1.38308 * 120.07659 * 0.02562 * 16 15 14 18 18 C 1.38262 * 120.14770 * 359.97163 * 17 16 15 19 19 C 1.50701 * 119.96308 * 180.02562 * 18 17 16 20 20 C 1.53785 * 113.69000 * 320.93839 * 19 18 17 21 21 C 1.53779 * 87.08093 * 139.98979 * 20 19 18 22 22 C 1.53781 * 113.61206 * 58.47375 * 19 18 17 23 23 C 1.38123 * 120.07472 * 0.29724 * 18 17 16 24 24 H 1.08997 * 109.47036 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.46726 * 299.99706 * 1 2 3 26 26 H 1.09002 * 109.47034 * 59.99346 * 1 2 3 27 27 H 1.09000 * 109.46995 * 304.99277 * 4 2 1 28 28 H 1.08995 * 109.47150 * 64.99986 * 4 2 1 29 29 H 0.96996 * 120.00215 * 179.97438 * 8 7 5 30 30 H 0.97001 * 119.99632 * 265.00024 * 13 2 1 31 31 H 1.07998 * 120.04096 * 359.97438 * 15 14 13 32 32 H 1.07998 * 119.96162 * 179.97438 * 16 15 14 33 33 H 1.07997 * 119.92731 * 179.97438 * 17 16 15 34 34 H 1.09002 * 112.85178 * 189.66681 * 19 18 17 35 35 H 1.09003 * 113.60734 * 254.54099 * 20 19 18 36 36 H 1.08996 * 113.61146 * 25.43597 * 20 19 18 37 37 H 1.08994 * 113.61314 * 220.01752 * 21 20 19 38 38 H 1.09005 * 113.69135 * 89.12376 * 21 20 19 39 39 H 1.09005 * 113.61302 * 334.48043 * 22 19 18 40 40 H 1.08993 * 113.62030 * 105.38889 * 22 19 18 41 41 H 1.08000 * 120.04051 * 179.72709 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5420 -0.6149 1.3125 6 1 4.0790 -0.0862 0.5391 7 6 4.2305 -1.1937 2.3575 8 7 5.5413 -1.1013 2.4127 9 14 3.3017 -2.1089 3.6950 10 1 3.1701 -3.5388 3.3165 11 1 4.0455 -2.0025 4.9759 12 1 1.9510 -1.5132 3.8561 13 7 2.0183 -0.6905 -1.1963 14 6 2.1517 0.0063 -2.3994 15 6 1.8212 1.3542 -2.4636 16 6 1.9547 2.0402 -3.6545 17 6 2.4163 1.3869 -4.7828 18 6 2.7462 0.0456 -4.7224 19 6 3.2493 -0.6620 -5.9541 20 6 2.5317 -0.2383 -7.2466 21 6 3.9063 -0.2913 -7.9340 22 6 4.5217 -0.0350 -6.5481 23 6 2.6098 -0.6480 -3.5357 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 1.6055 -0.2618 2.1369 28 1 1.7517 -1.7716 1.2054 29 1 6.0257 -1.5081 3.1480 30 1 2.2490 -1.6317 -1.1527 31 1 1.4602 1.8649 -1.5831 32 1 1.6975 3.0879 -3.7052 33 1 2.5194 1.9257 -5.7130 34 1 3.3144 -1.7423 -5.8248 35 1 1.8280 -0.9826 -7.6193 36 1 2.1048 0.7636 -7.2006 37 1 4.0719 0.5204 -8.6422 38 1 4.1522 -1.2699 -8.3466 39 1 4.6388 1.0226 -6.3113 40 1 5.4245 -0.6150 -6.3572 41 1 2.8634 -1.6968 -3.4902 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709994177.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:11 Heat of formation + Delta-G solvation = 13.369573 kcal Electronic energy + Delta-G solvation = -18869.739762 eV Core-core repulsion = 16134.527934 eV Total energy + Delta-G solvation = -2735.211828 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.89279 -39.27305 -37.33719 -34.79843 -32.99203 -31.95143 -29.79631 -28.96155 -26.41501 -26.28714 -24.82419 -23.23661 -22.68593 -20.98603 -19.89703 -18.91213 -18.20295 -17.07011 -16.53304 -16.30720 -16.28652 -15.57379 -15.07820 -14.79182 -14.50850 -14.32052 -14.00463 -13.83265 -13.59005 -13.31685 -13.30010 -13.24325 -12.81542 -12.59070 -12.45088 -12.09390 -12.02382 -11.78857 -11.53095 -11.38508 -11.30833 -11.24606 -11.00585 -10.77752 -10.66540 -9.49028 -8.28088 -8.11361 -6.31997 0.61869 0.87376 1.35309 1.37299 1.48548 2.35337 2.70738 3.05051 3.08878 3.79616 3.81442 3.92785 4.10384 4.16853 4.18947 4.27033 4.40825 4.44396 4.55385 4.64367 4.73742 4.81257 4.87801 4.92295 4.94572 5.02636 5.05182 5.11343 5.13558 5.15092 5.23685 5.30620 5.35778 5.42366 5.58792 5.61336 5.65115 5.76449 5.93997 6.16864 6.28977 6.67278 6.76343 7.00906 7.31934 8.88951 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.026678 B = 0.004381 C = 0.004028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.290185 B = 6389.440863 C = 6949.938295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.162 3.838 3 H 0.055 0.945 4 C -0.017 4.017 5 C -0.517 4.517 6 H 0.027 0.973 7 C 0.003 3.997 8 N -0.954 5.954 9 Si 0.951 3.049 10 H -0.269 1.269 11 H -0.288 1.288 12 H -0.242 1.242 13 N -0.728 5.728 14 C 0.215 3.785 15 C -0.227 4.227 16 C -0.072 4.072 17 C -0.191 4.191 18 C -0.026 4.026 19 C -0.082 4.082 20 C -0.127 4.127 21 C -0.132 4.132 22 C -0.134 4.134 23 C -0.221 4.221 24 H 0.057 0.943 25 H 0.072 0.928 26 H 0.058 0.942 27 H 0.037 0.963 28 H 0.025 0.975 29 H 0.264 0.736 30 H 0.395 0.605 31 H 0.116 0.884 32 H 0.139 0.861 33 H 0.135 0.865 34 H 0.091 0.909 35 H 0.072 0.928 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.063 0.937 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.622 2.294 -17.080 19.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.057 3.943 3 H 0.073 0.927 4 C -0.055 4.055 5 C -0.556 4.556 6 H 0.045 0.955 7 C -0.194 4.194 8 N -0.595 5.595 9 Si 0.775 3.225 10 H -0.194 1.194 11 H -0.214 1.214 12 H -0.165 1.165 13 N -0.354 5.354 14 C 0.110 3.890 15 C -0.250 4.250 16 C -0.091 4.091 17 C -0.211 4.211 18 C -0.027 4.027 19 C -0.101 4.101 20 C -0.164 4.164 21 C -0.169 4.169 22 C -0.172 4.172 23 C -0.244 4.244 24 H 0.077 0.923 25 H 0.091 0.909 26 H 0.077 0.923 27 H 0.055 0.945 28 H 0.043 0.957 29 H 0.073 0.927 30 H 0.229 0.771 31 H 0.134 0.866 32 H 0.157 0.843 33 H 0.153 0.847 34 H 0.109 0.891 35 H 0.091 0.909 36 H 0.107 0.893 37 H 0.097 0.903 38 H 0.105 0.895 39 H 0.099 0.901 40 H 0.082 0.918 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -9.561 2.362 -16.789 19.465 hybrid contribution 0.531 -0.860 1.186 1.558 sum -9.030 1.502 -15.603 18.090 Atomic orbital electron populations 1.22195 0.94623 1.02302 1.02186 1.20779 0.93285 0.95793 0.84478 0.92667 1.19822 0.94371 0.96518 0.94778 1.21315 0.92113 1.33963 1.08159 0.95488 1.26022 0.95511 0.97117 1.00725 1.70090 1.08708 1.47131 1.33538 0.85646 0.79779 0.79230 0.77852 1.19431 1.21450 1.16545 1.44836 1.71628 1.12165 1.06776 1.18161 0.92533 0.92085 0.86261 1.20805 1.11304 0.93239 0.99641 1.21106 0.96252 0.99910 0.91784 1.20836 1.06826 0.94343 0.99120 1.19656 0.95290 0.94030 0.93691 1.21635 0.97785 0.99214 0.91417 1.23003 0.96922 1.02374 0.94092 1.22806 0.95596 1.02756 0.95786 1.22997 0.96291 1.01125 0.96776 1.20594 1.10810 1.00244 0.92769 0.92349 0.90904 0.92323 0.94452 0.95706 0.92700 0.77134 0.86640 0.84330 0.84692 0.89081 0.90906 0.89300 0.90255 0.89458 0.90116 0.91831 0.86946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.64 9.43 71.98 0.68 -3.97 16 2 C 0.16 6.21 2.21 44.99 0.10 6.31 16 3 H 0.06 2.28 6.49 -2.39 -0.02 2.26 16 4 C -0.02 -0.77 3.58 29.85 0.11 -0.66 16 5 C -0.52 -29.39 9.39 25.60 0.24 -29.15 16 6 H 0.03 1.74 7.99 -2.91 -0.02 1.72 16 7 C 0.00 0.15 5.47 84.65 0.46 0.61 16 8 N -0.95 -60.30 13.96 21.45 0.30 -60.00 16 9 Si 0.95 43.67 27.47 68.60 1.88 45.55 16 10 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 11 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 12 H -0.24 -10.10 6.54 99.48 0.65 -9.45 16 13 N -0.73 -27.86 4.96 -318.96 -1.58 -29.44 16 14 C 0.22 7.80 6.64 38.21 0.25 8.06 16 15 C -0.23 -7.62 8.85 22.40 0.20 -7.43 16 16 C -0.07 -2.03 10.04 22.25 0.22 -1.80 16 17 C -0.19 -5.05 8.54 22.29 0.19 -4.86 16 18 C -0.03 -0.74 5.29 -19.89 -0.11 -0.84 16 19 C -0.08 -1.85 3.98 -11.01 -0.04 -1.89 16 20 C -0.13 -2.20 7.46 31.12 0.23 -1.97 16 21 C -0.13 -2.03 8.08 31.12 0.25 -1.77 16 22 C -0.13 -2.70 7.54 31.12 0.23 -2.47 16 23 C -0.22 -7.38 9.56 22.40 0.21 -7.16 16 24 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 26 H 0.06 1.66 7.71 -2.39 -0.02 1.64 16 27 H 0.04 1.62 7.20 -2.39 -0.02 1.61 16 28 H 0.02 1.07 7.57 -2.39 -0.02 1.05 16 29 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 30 H 0.39 15.21 8.62 -92.71 -0.80 14.41 16 31 H 0.12 3.84 6.12 -2.91 -0.02 3.83 16 32 H 0.14 3.08 8.06 -2.91 -0.02 3.06 16 33 H 0.14 2.83 6.71 -2.91 -0.02 2.81 16 34 H 0.09 2.04 8.08 -2.39 -0.02 2.02 16 35 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.09 1.49 6.39 -2.39 -0.02 1.47 16 37 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 39 H 0.08 1.67 7.64 -2.38 -0.02 1.65 16 40 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.11 3.63 8.05 -2.91 -0.02 3.60 16 Total: -1.00 -65.80 326.97 3.99 -61.81 By element: Atomic # 1 Polarization: 30.91 SS G_CDS: 0.15 Total: 31.06 kcal Atomic # 6 Polarization: -52.22 SS G_CDS: 3.24 Total: -48.98 kcal Atomic # 7 Polarization: -88.16 SS G_CDS: -1.28 Total: -89.44 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 1.88 Total: 45.55 kcal Total: -65.80 3.99 -61.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709994177.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.181 kcal (2) G-P(sol) polarization free energy of solvation -65.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds